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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:577144..580629+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006830-T1 ID=KJC3_006830-T1|Name=KJC3_006830-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3486bp|location=Sequence derived from alignment at ch5:577144..580629+ (Aspergillus niger KJC3)
GCGAAAGCGATGACGCTGATGCTGCCATGATGCCATGCATCCGGAACCAG
ACTGAAGGAATCACTGCCTAATCGTCTTGTACTCCCCTTCTCTCTCCTCT
CACACACAGACTCTCTCCACTTCCTCGTCATCTTGCTGACTGACTTGACT
TTCTGTACGCCTTTTCACCCGGCCGTTCCATCTCCGGCCAGCCACTTACT
TCCCTCCCACTTCCCAGTCCAACCATGCCCTTCCGACCCAGCCGTGTGAG
TATTCGTGCCTGGTTCGCATCCACGGCTCTCCAGACTTCTACCATTTAGT
TCTTGTCTTCCCCTCTCGCATTCTGTGAGAGGATCCGTCCGTCTTTTCCC
TTTCTGCTTGCTTGCTTGCTTGCTTTTTCTTCCTCCTCCTCCCCCCGACT
GCATTAGCTCTCGGTCATACATCCAGCCTACATCTCTAGCACATCTGACC
GACGGGTCCTACGGGTCGATCACCCCCCTCCACTCTGGGGTTACCTCTCT
CCTCCTACATAAACTGTCCCTGCTCCTGCTTGCTGCGGACACGGAAATTA
GCTGCTGTTTCATCTGGTCCCTTTTTTCACCTTCTCTCGGATATATTTTC
AGGTTTCCTTTTCGTGGCCCTGGCGAGGCTCAGGCGGAGGTAAGCCGACC
CCCGAATCCCATTTGCCCGTCCCATGGTTCCCCTCCTTCCTTTCCTCGTA
TGTCACCGGTTCTCCAGCTGCTCGCCACCCACTCAAGGCTCGGTCTGGAA
CGCACGGCTAGCACGGCGAAAAGCTCGAGGTCGTCTTGGGTTTAATAATA
TGGCCCTCTCCTACTTCTTCTGCATCCATACATGCAATTTTCTCTCGTCG
CAGATCACTGACGTTCCGGCTACTATATAGTTGACTTGCATTCTCACTAC
TCTCCGGACCCGCATTCCTCGGTTGTCATCCCAACTTCTGTTGCGCCCGT
TTGCTGCCTCTTATACATTCCTGGCCGCATTGGGACTTTATGTGAATTAC
TGGGGCCGTCTTCGTCTACAACTGCTACTGCACCCGCAATTATAGACTGC
CTCATTACCCACTGCGCGGTCCTCGGGACTCCGTCCTGTGTTACTCTGCT
TGGTAGGCTTGGTGACCCCACGGGATTCTGAGTCGCCACCATGCCTTCCA
CTCTGTGGGAGAAGACGAAAGGCACATCTAAAAAAGGATTCGATAAAGCA
TGGCATACCCTCGACAAGCTGGGCGATCCCGTCAACCGGCTTTCCTATAA
GGTCGGCGCAGAGGCTTTCTGGCCCATGACCCTCGATAAAGAAAGCGATA
AAGCGGCGCGCATTTTGCGAAGTTTCTGCAAAGATGGTTTTTATTCCAAC
GATGAAGCCGAACGGAAAAGCACCGACAGCTCGATCAGCAAAGAATCCGG
CAAGATAGATCGCCCCAAGGGCAAGCAGCGGGTCTTAAAGAAGATCCCCG
CTAGGGTTATACAGCGGGCTAAGGGTCTCGCTATCTTCACTACTATGCGC
ACAGGCCTCTGGGTCAGTGGCTCGGGTGGTAGTGGTGTGCTCCTGGCGCG
GACCCCAGATACCAACGAATGGAGTCCGCCTTCCGGCATTATGCTTCATA
CGGCTGGTATCGGTTTTCTGGCGGGCGTGGATATCTATGACTGTGTGGTG
GTCATCAATACCTACGAGGCCTTGGAGGCTTTCAAAAAAGTGCGGTGCAC
CTTGGGTGGAGAAGTCAGCGCTGCAGCCGGTCCGGTTGGGATGGGCGGCG
TGCTTGATTCGGAAGTGCACAAGCGCCAGGCCCCCATCTGGACTTACATG
AAGAGTCGTGGTCTGTATGCTGGCGTCGCAGTGGATGGTACCATTATTAT
CGAGCGTACCGATGAGAACGAGCGTTTCTATGGCGAGCGCATATCGGTTA
CTGACATTCTCGCGGGCAAGGCCAAACGGCCTCCTGCATCGATTCAAACC
CTCCTCAACACCGTCAAAGCTGCCGAGGGCAACCCAACGGTGGACGAGAA
CTTGCTGCCACCCGGCGAAACCCCTGGGGATGTTGAGCTTGCGCCGGGAC
CGGGCTCGTTCGGCATTCCCGACCCGGAGGACCCTGATCCATTCGGTGTC
AAGGCGCTGGAGGCGGAGGGTCTCTTCATTCGCGAAGCTGGATCAAAATC
CAGACCATCGCAGGAAGCGTTTGAGTTTAAACCCGGCCCGAACAGCCCGA
TATTTGCGACTTTCCGACGGAGCATCGACAGCTCACCACGCAATAGCTGG
CGAGCAAGTGTGCAGAGCTACGCCAGTATGGATCGAGGGACCCAAACTGA
TGATGGTCCTACGACTGCCCCGACCTCTATCAGTCGTGCCTCCTCCCGGA
GCTACCGTGATGTATCCGACCGGGCCGAAACCAGTCCTTGGGACAACGAG
GAGGGACGCTGGGAGACTGTCATCCCGGAACATGATGAATACCACGGTCG
GGATGATGTTGAAGAGGACGTGGATCTGGAGGATGACGATGTGGAAATTC
ACGAGGTCAGCAGCGCCACTGTGTCGAAGCGCGAGAGTGCTGCCCATTCT
CCTGTCCCGATTGAAGATTCCATCGCGCCTGTCGAATTCAAGCGTCACTC
GCCTACCTTTACCAGGGCACGCCTTGTGACGATCCCTAAGCGGATTCCCC
CGGCCCTTCCACCCCGGAACCCCCAGCGGACACCCGCTCCCGTCTCGACC
TCGACTCCTAGCTCGCCTACGGCGAACCCCTACGCACACAGCCGCCGGCG
TTCCGTGGCATCTAGTCCGGGACACGCCACATATGGGTTCACAGGGATGC
CTCTTTACCACAAGAGCGATTCGGAAAGTGACCTGTCCTCCGCTGGCGCT
CCCGAGTCGTCCAACAAGCCGTCACCAGACCGCGAAGAGTTCCACTCGGT
ATCCAGTCTGCACGACTCGGACGTGGCATCCGAGAAGGAGACCGAGGCCA
AGGAGGCCAAGGAGATCGAGACCGAGGAGAACCACGAGCCATCATCTGAT
GCGAGCACTCCCACATATGTTCACGAGTCTGATGTCTCGCCCTGGGCGAA
GTCTGACACAGACCTGGCACCCACGAAGACCATCACTTCTGATGACCACG
TCAAAGTTGATTCTACGGCACAGCCTCAGGCTGTGTGAGTGCTAACAGCA
CATTACCGCCACTTCTTTGTATATATCCTTCTGGCATATTGTTATTGGGA
TTCATCCCGTTGCATATTGCATGTTGATTCCCACTGTGTTTCGGCTGTTT
GTTTCAGAGCCATCAGCTCTTGTTGTTATGTTTTATGTCATAGTGTAATG
CTAGCCTTAGCGTGCGTGGTGTTTGGATTTCAGATTGGGCATGGATACCT
GGGCGTCTCGGGATGGATACTGGGACGTGGTAAGATGCTTGGAAGCGTTG
ATTTTGAGTTTGACAATATATCCCTATGTTTCTCTTCTCCACACCCTTTT
ACCGTAATGCGACAGCATTGTGTAGAGTGCATTGCC back to topCoding sequence (CDS) from alignment at ch5:577144..580629+ >KJC3_006830-T1 ID=KJC3_006830-T1|Name=KJC3_006830-T1|organism=Aspergillus niger KJC3|type=CDS|length=1998bp|location=Sequence derived from alignment at ch5:577144..580629+ (Aspergillus niger KJC3)
ATGCCTTCCACTCTGTGGGAGAAGACGAAAGGCACATCTAAAAAAGGATT
CGATAAAGCATGGCATACCCTCGACAAGCTGGGCGATCCCGTCAACCGGC
TTTCCTATAAGGTCGGCGCAGAGGCTTTCTGGCCCATGACCCTCGATAAA
GAAAGCGATAAAGCGGCGCGCATTTTGCGAAGTTTCTGCAAAGATGGTTT
TTATTCCAACGATGAAGCCGAACGGAAAAGCACCGACAGCTCGATCAGCA
AAGAATCCGGCAAGATAGATCGCCCCAAGGGCAAGCAGCGGGTCTTAAAG
AAGATCCCCGCTAGGGTTATACAGCGGGCTAAGGGTCTCGCTATCTTCAC
TACTATGCGCACAGGCCTCTGGGTCAGTGGCTCGGGTGGTAGTGGTGTGC
TCCTGGCGCGGACCCCAGATACCAACGAATGGAGTCCGCCTTCCGGCATT
ATGCTTCATACGGCTGGTATCGGTTTTCTGGCGGGCGTGGATATCTATGA
CTGTGTGGTGGTCATCAATACCTACGAGGCCTTGGAGGCTTTCAAAAAAG
TGCGGTGCACCTTGGGTGGAGAAGTCAGCGCTGCAGCCGGTCCGGTTGGG
ATGGGCGGCGTGCTTGATTCGGAAGTGCACAAGCGCCAGGCCCCCATCTG
GACTTACATGAAGAGTCGTGGTCTGTATGCTGGCGTCGCAGTGGATGGTA
CCATTATTATCGAGCGTACCGATGAGAACGAGCGTTTCTATGGCGAGCGC
ATATCGGTTACTGACATTCTCGCGGGCAAGGCCAAACGGCCTCCTGCATC
GATTCAAACCCTCCTCAACACCGTCAAAGCTGCCGAGGGCAACCCAACGG
TGGACGAGAACTTGCTGCCACCCGGCGAAACCCCTGGGGATGTTGAGCTT
GCGCCGGGACCGGGCTCGTTCGGCATTCCCGACCCGGAGGACCCTGATCC
ATTCGGTGTCAAGGCGCTGGAGGCGGAGGGTCTCTTCATTCGCGAAGCTG
GATCAAAATCCAGACCATCGCAGGAAGCGTTTGAGTTTAAACCCGGCCCG
AACAGCCCGATATTTGCGACTTTCCGACGGAGCATCGACAGCTCACCACG
CAATAGCTGGCGAGCAAGTGTGCAGAGCTACGCCAGTATGGATCGAGGGA
CCCAAACTGATGATGGTCCTACGACTGCCCCGACCTCTATCAGTCGTGCC
TCCTCCCGGAGCTACCGTGATGTATCCGACCGGGCCGAAACCAGTCCTTG
GGACAACGAGGAGGGACGCTGGGAGACTGTCATCCCGGAACATGATGAAT
ACCACGGTCGGGATGATGTTGAAGAGGACGTGGATCTGGAGGATGACGAT
GTGGAAATTCACGAGGTCAGCAGCGCCACTGTGTCGAAGCGCGAGAGTGC
TGCCCATTCTCCTGTCCCGATTGAAGATTCCATCGCGCCTGTCGAATTCA
AGCGTCACTCGCCTACCTTTACCAGGGCACGCCTTGTGACGATCCCTAAG
CGGATTCCCCCGGCCCTTCCACCCCGGAACCCCCAGCGGACACCCGCTCC
CGTCTCGACCTCGACTCCTAGCTCGCCTACGGCGAACCCCTACGCACACA
GCCGCCGGCGTTCCGTGGCATCTAGTCCGGGACACGCCACATATGGGTTC
ACAGGGATGCCTCTTTACCACAAGAGCGATTCGGAAAGTGACCTGTCCTC
CGCTGGCGCTCCCGAGTCGTCCAACAAGCCGTCACCAGACCGCGAAGAGT
TCCACTCGGTATCCAGTCTGCACGACTCGGACGTGGCATCCGAGAAGGAG
ACCGAGGCCAAGGAGGCCAAGGAGATCGAGACCGAGGAGAACCACGAGCC
ATCATCTGATGCGAGCACTCCCACATATGTTCACGAGTCTGATGTCTCGC
CCTGGGCGAAGTCTGACACAGACCTGGCACCCACGAAGACCATCACTTCT
GATGACCACGTCAAAGTTGATTCTACGGCACAGCCTCAGGCTGTGTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006830-T1.utr5p1 | KJC3_006830-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_006830-T1.utr3p1 | KJC3_006830-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR007461 |
| DBxref | PFAM:PF04366 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:577144..580629 + |
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