You are here

Home

KJC3_006845-T1, KJC3_006845-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006845-T1
Unique NameKJC3_006845-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch5:615627..616330+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006845-T1 ID=KJC3_006845-T1|Name=KJC3_006845-T1|organism=Aspergillus niger KJC3|type=mRNA|length=704bp|location=Sequence derived from alignment at ch5:615627..616330+ (Aspergillus niger KJC3)
TTCCCAACACCCTCTCACCCTCCCTACCTTGTCTATCAATTCCGACCCTG
AAAATCAAAAAGGGAAATAAAGATGTCCTTCTACGTCGCCCCAAGCCAGC
AGCGCACTCTGCGCGCCTGCATGGTGTGCTCCCTTGTCCAACTGCACAGC
GTACGTTCAGCTGCTACCTCCCAATTAAAACCAACCCAACCCAACCCGAA
CAACTAACATTTTCTCCTTCCTTACTGCTTAGAAATTCATGCGCGAAGGC
TGTCCCAACTGCGACAACGTCCTCGGCCTCCGCGGCAACAACGACGCGAT
CCAAGAATGCACGTCGCAGGTCTTCGAGGGCCTGGTGACGCTCCGCGATC
CCACAACGAGCTGGGTGGCTAGGTGGCAGAGATTGGATAGTTATGTGCCG
GGGACGTATGCGGTTAAGGTTACGGGATCGGTGAGTACTCTCGCCCACCC
ATACTGAACTTCAATTATGTCCGGGGGTGGTGGTGAAGAGAATATTGGGC
TAACGGTGATGGGTGAACAGCTTCCCGATGAGATTATTTCCAGTTTGGAG
GATTCGGGTGTCAAGTATATTCCGTATGTTGCCCTTCTATTCCTTCTTTG
CATGTCTTTGCATTGTGTGTTGCGTGTTGGATTAATTGATGAGTGCTGAT
TATTATGTGTCTCGATACAGGAGGGATGGTAGCACGGGTGAAGAGGAGGC
GTGA
back to top

Coding sequence (CDS) from alignment at ch5:615627..616330+

>KJC3_006845-T1 ID=KJC3_006845-T1|Name=KJC3_006845-T1|organism=Aspergillus niger KJC3|type=CDS|length=1452bp|location=Sequence derived from alignment at ch5:615627..616330+ (Aspergillus niger KJC3)
ATGTCCTTCTACGTCGCCCCAAGCCAGCAGCGCACTCTGCGCGCCTGCAT
GGTGTGCTCCCTTGTCCAACTGCACAGCAAATTCATGCGCGAAGGCTGTC
CCAACTGCGACAACGTCCTCGGCCTCCGCGGCAACAACGACGCGATCCAA
GAATGCACGTCGCAGGTCTTCGAGGGCCTGGTGACGCTCCGCGATCCCAC
AACGAGCTGGGTGGCTAGGTGGCAGAGATTGGATAGTTATGTGCCGGGGA
CGTATGCGGTTAAGGTTACGGGATCGCTTCCCGATGAGATTATTTCCAGT
TTGGAGGATTCGGGTGTCAAGTATATTCCGAGGGATGGTAGCACGGGTGA
AGAGGAGGCGTGAATGTCCTTCTACGTCGCCCCAAGCCAGCAGCGCACTC
TGCGCGCCTGCATGGTGTGCTCCCTTGTCCAACTGCACAGCAAATTCATG
CGCGAAGGCTGTCCCAACTGCGACAACGTCCTCGGCCTCCGCGGCAACAA
CGACGCGATCCAAGAATGCACGTCGCAGGTCTTCGAGGGCCTGGTGACGC
TCCGCGATCCCACAACGAGCTGGGTGGCTAGGTGGCAGAGATTGGATAGT
TATGTGCCGGGGACGTATGCGGTTAAGGTTACGGGATCGCTTCCCGATGA
GATTATTTCCAGTTTGGAGGATTCGGGTGTCAAGTATATTCCGAGGGATG
GTAGCACGGGTGAAGAGGAGGCGTGAATGTCCTTCTACGTCGCCCCAAGC
CAGCAGCGCACTCTGCGCGCCTGCATGGTGTGCTCCCTTGTCCAACTGCA
CAGCAAATTCATGCGCGAAGGCTGTCCCAACTGCGACAACGTCCTCGGCC
TCCGCGGCAACAACGACGCGATCCAAGAATGCACGTCGCAGGTCTTCGAG
GGCCTGGTGACGCTCCGCGATCCCACAACGAGCTGGGTGGCTAGGTGGCA
GAGATTGGATAGTTATGTGCCGGGGACGTATGCGGTTAAGGTTACGGGAT
CGCTTCCCGATGAGATTATTTCCAGTTTGGAGGATTCGGGTGTCAAGTAT
ATTCCGAGGGATGGTAGCACGGGTGAAGAGGAGGCGTGAATGTCCTTCTA
CGTCGCCCCAAGCCAGCAGCGCACTCTGCGCGCCTGCATGGTGTGCTCCC
TTGTCCAACTGCACAGCAAATTCATGCGCGAAGGCTGTCCCAACTGCGAC
AACGTCCTCGGCCTCCGCGGCAACAACGACGCGATCCAAGAATGCACGTC
GCAGGTCTTCGAGGGCCTGGTGACGCTCCGCGATCCCACAACGAGCTGGG
TGGCTAGGTGGCAGAGATTGGATAGTTATGTGCCGGGGACGTATGCGGTT
AAGGTTACGGGATCGCTTCCCGATGAGATTATTTCCAGTTTGGAGGATTC
GGGTGTCAAGTATATTCCGAGGGATGGTAGCACGGGTGAAGAGGAGGCGT
GA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0032786positive regulation of DNA-templated transcription, elongation
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SPT4KJC3_006845Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006845-T1KJC3_006845-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006845-T1.utr5p1KJC3_006845-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006845-T1.exon1KJC3_006845-T1.exon1Aspergillus niger KJC3exon
KJC3_006845-T1.exon2KJC3_006845-T1.exon2Aspergillus niger KJC3exon
KJC3_006845-T1.exon3KJC3_006845-T1.exon3Aspergillus niger KJC3exon
KJC3_006845-T1.exon4KJC3_006845-T1.exon4Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006845-T1.cdsKJC3_006845-T1.cdsAspergillus niger KJC3CDS


Properties
Property NameValue
NoteBUSCO:EOG09265BBJ
DBxrefInterPro:IPR029040
DBxrefInterPro:IPR038510
DBxrefInterPro:IPR009287
DBxrefInterPro:IPR022800
DBxrefPFAM:PF06093
Producttranscription elongation factor spt4
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch5supercontigch5:615627..616330 +
Powered by Drupal