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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:668549..670090- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_006862-T1 ID=KJC3_006862-T1|Name=KJC3_006862-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1542bp|location=Sequence derived from alignment at ch5:668549..670090- (Aspergillus niger KJC3)
ATGCCTCCCCGGAAGCAGTGGATGTAGGTTGCCCCTCCACATTCACCTAC
TCAAATCTATGTACCCAACTAACCCACTCTCAGCGACAAGAAAACCGCAA
CTACCTACCAACTCTTCCACCGTTCCCAACATGACCCTCTCATTCACGAT
CCCTCTGCTGACGACCGCGTCCTGCACCCTGTCTACGGTCCTCCCATCAC
CCCCAGTGAATCTTCCTCCGCCTCCAAGCACCGCGGCCAAAGTCTCGCCG
AGCTGAATCAAACCTTCGGCGATGCCGCGCGCAAAAACGAAGGTGAAGCC
GCCAACTACGGCATTTTCTACGATGACTCGCAATACGACTACATGCAGCA
CTTGCGCGAGCTGGGCACCGGCGCCGGCGACGCTTACTTCGTCGAAGCCA
AGACGAAGGGCAAGGACAAGGGCAAAGGATTGAAGCTGGAGGATGCTTTG
AAACAGGTATCGCTGGATGATGGGCGAAGCGAGTTTGGTGGCACCGAAAG
CGTCTACAGCTATGACATGCGCTCGACGGCGTCTTCCTACGTGCGCAAAC
CCACCTACCAGGACCAGCAGAACGTGCCCGATGCTATTGCGGGTTTCCAG
CCGGATATGGACCCGCGGTTGCGCGAAGCCTTGGAGGCGCTGGAGGACGA
GGAGTACGTGGATGAAGATGACGAGGAGGACGTCTTCGGCCAGTTGACTA
CGCGGGCAGAGGAAATGGACCAGGGTGATTGGGAGGATACCATCTTCGAC
GATGTCGAGGAAGAAGACGATGGATGGGAATCCGATGCGACAGAAAAGGC
CCCCGTGCAGATGGACACCACGGCCGCAAAGGCCCGCTACCAAGCCTCAG
AGCAGGAGGATAAGCCCGGCGAGCTTCCCGAACACAACGAGCCCGCGCCC
GACATGCACCCCGAAGACCAAGGCTGGATGCGCGAATTCGCCAAGTTCAA
GAAGGACGCCAAGTCTGGCAAAACAGCCGGCGTCCCCGCCGGTCCTCCCA
GCGTCGTCCCCTCCCATCAGGGCAGCACCCTCGCCTCGACCGTGTTCACC
GTCGGAGGCACCCCCATCCGCCGCAAGAAGCGCAAGGGCGCCCTCACCAA
CCCCTCCGCCTACTCCATGACTTCGTCCTCCCTCGCCCGTACAGAAGGCC
ACCGTCTCCTCGACGACCGCTTCGAGCGCGTCGAAGCCCTCTACTCCCTC
GACGAGGAGGATGAGTTCGACGACAACATGTCCATGGTCAGTGGAATGAC
CGGTATGACCGGTATGACTGGTGTCTCGGGCATTTCGACTGCCTCGTCTC
AGGCACCGAGTCTCGTTGACGCGAACGGTGATGCCGTTCGTCCTTCCCAC
AACTTCAACAACATCATGGATGATTTCCTTGCTGGGTGGGATGACAAGAC
GAGTTCCCAGGCTAAGCGGAAGGGCGCAAAGGCGAAGCGCGGAAAGAACG
GTAATGAGGCGATTGGCATTCGCATGCTGGATGAGGTTCGGCAGGGATTG
GGCCCTGCTAGGGTTACTGGGAAGGTGTCGGGCAGGGCGTAG back to topCoding sequence (CDS) from alignment at ch5:668549..670090- >KJC3_006862-T1 ID=KJC3_006862-T1|Name=KJC3_006862-T1|organism=Aspergillus niger KJC3|type=CDS|length=2964bp|location=Sequence derived from alignment at ch5:668549..670090- (Aspergillus niger KJC3)
CGACAAGAAAACCGCAACTACCTACCAACTCTTCCACCGTTCCCAACATG
ACCCTCTCATTCACGATCCCTCTGCTGACGACCGCGTCCTGCACCCTGTC
TACGGTCCTCCCATCACCCCCAGTGAATCTTCCTCCGCCTCCAAGCACCG
CGGCCAAAGTCTCGCCGAGCTGAATCAAACCTTCGGCGATGCCGCGCGCA
AAAACGAAGGTGAAGCCGCCAACTACGGCATTTTCTACGATGACTCGCAA
TACGACTACATGCAGCACTTGCGCGAGCTGGGCACCGGCGCCGGCGACGC
TTACTTCGTCGAAGCCAAGACGAAGGGCAAGGACAAGGGCAAAGGATTGA
AGCTGGAGGATGCTTTGAAACAGGTATCGCTGGATGATGGGCGAAGCGAG
TTTGGTGGCACCGAAAGCGTCTACAGCTATGACATGCGCTCGACGGCGTC
TTCCTACGTGCGCAAACCCACCTACCAGGACCAGCAGAACGTGCCCGATG
CTATTGCGGGTTTCCAGCCGGATATGGACCCGCGGTTGCGCGAAGCCTTG
GAGGCGCTGGAGGACGAGGAGTACGTGGATGAAGATGACGAGGAGGACGT
CTTCGGCCAGTTGACTACGCGGGCAGAGGAAATGGACCAGGGTGATTGGG
AGGATACCATCTTCGACGATGTCGAGGAAGAAGACGATGGATGGGAATCC
GATGCGACAGAAAAGGCCCCCGTGCAGATGGACACCACGGCCGCAAAGGC
CCGCTACCAAGCCTCAGAGCAGGAGGATAAGCCCGGCGAGCTTCCCGAAC
ACAACGAGCCCGCGCCCGACATGCACCCCGAAGACCAAGGCTGGATGCGC
GAATTCGCCAAGTTCAAGAAGGACGCCAAGTCTGGCAAAACAGCCGGCGT
CCCCGCCGGTCCTCCCAGCGTCGTCCCCTCCCATCAGGGCAGCACCCTCG
CCTCGACCGTGTTCACCGTCGGAGGCACCCCCATCCGCCGCAAGAAGCGC
AAGGGCGCCCTCACCAACCCCTCCGCCTACTCCATGACTTCGTCCTCCCT
CGCCCGTACAGAAGGCCACCGTCTCCTCGACGACCGCTTCGAGCGCGTCG
AAGCCCTCTACTCCCTCGACGAGGAGGATGAGTTCGACGACAACATGTCC
ATGGTCAGTGGAATGACCGGTATGACCGGTATGACTGGTGTCTCGGGCAT
TTCGACTGCCTCGTCTCAGGCACCGAGTCTCGTTGACGCGAACGGTGATG
CCGTTCGTCCTTCCCACAACTTCAACAACATCATGGATGATTTCCTTGCT
GGGTGGGATGACAAGACGAGTTCCCAGGCTAAGCGGAAGGGCGCAAAGGC
GAAGCGCGGAAAGAACGGTAATGAGGCGATTGGCATTCGCATGCTGGATG
AGGTTCGGCAGGGATTGGGCCCTGCTAGGGTTACTGGGAAGGTGTCGGGC
AGGGCGTAGATGCCTCCCCGGAAGCAGTGGATCGACAAGAAAACCGCAAC
TACCTACCAACTCTTCCACCGTTCCCAACATGACCCTCTCATTCACGATC
CCTCTGCTGACGACCGCGTCCTGCACCCTGTCTACGGTCCTCCCATCACC
CCCAGTGAATCTTCCTCCGCCTCCAAGCACCGCGGCCAAAGTCTCGCCGA
GCTGAATCAAACCTTCGGCGATGCCGCGCGCAAAAACGAAGGTGAAGCCG
CCAACTACGGCATTTTCTACGATGACTCGCAATACGACTACATGCAGCAC
TTGCGCGAGCTGGGCACCGGCGCCGGCGACGCTTACTTCGTCGAAGCCAA
GACGAAGGGCAAGGACAAGGGCAAAGGATTGAAGCTGGAGGATGCTTTGA
AACAGGTATCGCTGGATGATGGGCGAAGCGAGTTTGGTGGCACCGAAAGC
GTCTACAGCTATGACATGCGCTCGACGGCGTCTTCCTACGTGCGCAAACC
CACCTACCAGGACCAGCAGAACGTGCCCGATGCTATTGCGGGTTTCCAGC
CGGATATGGACCCGCGGTTGCGCGAAGCCTTGGAGGCGCTGGAGGACGAG
GAGTACGTGGATGAAGATGACGAGGAGGACGTCTTCGGCCAGTTGACTAC
GCGGGCAGAGGAAATGGACCAGGGTGATTGGGAGGATACCATCTTCGACG
ATGTCGAGGAAGAAGACGATGGATGGGAATCCGATGCGACAGAAAAGGCC
CCCGTGCAGATGGACACCACGGCCGCAAAGGCCCGCTACCAAGCCTCAGA
GCAGGAGGATAAGCCCGGCGAGCTTCCCGAACACAACGAGCCCGCGCCCG
ACATGCACCCCGAAGACCAAGGCTGGATGCGCGAATTCGCCAAGTTCAAG
AAGGACGCCAAGTCTGGCAAAACAGCCGGCGTCCCCGCCGGTCCTCCCAG
CGTCGTCCCCTCCCATCAGGGCAGCACCCTCGCCTCGACCGTGTTCACCG
TCGGAGGCACCCCCATCCGCCGCAAGAAGCGCAAGGGCGCCCTCACCAAC
CCCTCCGCCTACTCCATGACTTCGTCCTCCCTCGCCCGTACAGAAGGCCA
CCGTCTCCTCGACGACCGCTTCGAGCGCGTCGAAGCCCTCTACTCCCTCG
ACGAGGAGGATGAGTTCGACGACAACATGTCCATGGTCAGTGGAATGACC
GGTATGACCGGTATGACTGGTGTCTCGGGCATTTCGACTGCCTCGTCTCA
GGCACCGAGTCTCGTTGACGCGAACGGTGATGCCGTTCGTCCTTCCCACA
ACTTCAACAACATCATGGATGATTTCCTTGCTGGGTGGGATGACAAGACG
AGTTCCCAGGCTAAGCGGAAGGGCGCAAAGGCGAAGCGCGGAAAGAACGG
TAATGAGGCGATTGGCATTCGCATGCTGGATGAGGTTCGGCAGGGATTGG
GCCCTGCTAGGGTTACTGGGAAGGTGTCGGGCAGGGCGTAGATGCCTCCC
CGGAAGCAGTGGAT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0042274 | ribosomal small subunit biogenesis |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09262VVF |
| DBxref | InterPro:IPR007307 |
| DBxref | PFAM:PF04180 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:668549..670090 - |
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