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KJC3_006980-T1, KJC3_006980-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_006980-T1
Unique NameKJC3_006980-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch5:1111034..1112301-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_006980-T1 ID=KJC3_006980-T1|Name=KJC3_006980-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1268bp|location=Sequence derived from alignment at ch5:1111034..1112301- (Aspergillus niger KJC3)
CTAGGATTTTGGTTTCCTTCTCCATGTTCAGTATGCAACTTTTTTCTTAT
AAAGATCCTACCGACAAGCATCTACCATATAATAAATTGGATTGTATCAC
ACTGTGAATATATAAAATCTAGAATGGCCATCCAGTAAGTTAGTAAACGA
TCCTTCATATAATTGTTTTGGGAAGAGATAAGTAGGCAGCCAAAGAGACT
GATTGTGCTCCTCCAATCTTTGACAAAGGCAAGTCCCTTATGGCCCCTAC
TTAAACATGGTCTGTATTATAATGATATAATCCAATTCACAACCATCTAG
TCCTGACTTGATGGCATCCAGGTATCAAATTTGATACCTTAGGCATTAAA
GCGGGTAGCTACTCCACTTGTATCCTAAAGTCGAAGAGTCACTGCTCGGA
CATCTTAATGGAGGCTCCTTCTACGCGCCCTCAAACCAAGACAGCTTCAA
TCTACACCTTGCCCGTTTTAAACTCTAGAGGTCAGTAAGAAGAGACTTCT
TTCGACAAGTCATCATCATAACGCTGTTTGCTTCTCTTTGAGACTCAAAA
GTCCTCTCACCCACTTGCTTTTCCTCACTCTGCTACCAAAGGACTATTTA
CTTGTGAGTGTCTGCTTGGACCGTCTGTCAAGAACAGGCAGGGACCTTTC
TGTCAATTGTCGCAACAACGCATGATTTGATGCTTCTTTCTAACAGCAAC
TAGACTGCAGTGATTACGATAGTGTCTGCCCCGCTACCCCCGCCTTTCCA
GATGGACATCGATCTAAGCAGAAGGAATAAAAAGCCCCGCCCTTTGCTAG
AATCTGAACGGGAGAGATTAGAGGAATTCATTGATTCTATTCATTATTCA
GCCAGGTATGCCGCATACAAGCGATTTTTTTTTGGTGTGCCTTGGCCTTA
CAGCAAACGCAGATACTCAGATGACCAGTTCGAATACCGCCATGTCCAAC
TCCCCAAAAACATGCTCAAGAAAATACCTGCAGACTATTTTGACAGTTCA
AAAGGAACGCTAAAACTACTGTGGGAGGATGAATGGCGTGCACTTGGTAT
CACACAAGTACGTAAGAAGAGGTCGACGAAAGTTATAAATGTAAGACGTC
TAATTTAATGATCAGAGCTTGGGTTGGGAACATTATGAAGTGCACGAGCC
AGAACCACATATTCTTCTCTTTAAGTGAGTATGGGGACCATGTCATCGCT
TTCAAGCCTAACCAATGCATACAGGCGCCCCTTGAACTATCAGCCGCCAG
TATCACAGTAACTCGTCA
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Coding sequence (CDS) from alignment at ch5:1111034..1112301-

>KJC3_006980-T1 ID=KJC3_006980-T1|Name=KJC3_006980-T1|organism=Aspergillus niger KJC3|type=CDS|length=1380bp|location=Sequence derived from alignment at ch5:1111034..1112301- (Aspergillus niger KJC3)
GCGCCCCTTGAACTATCAGCCGCCAGTATCACAGTAAAGCTTGGGTTGGG
AACATTATGAAGTGCACGAGCCAGAACCACATATTCTTCTCTTTAAATAC
TCAGATGACCAGTTCGAATACCGCCATGTCCAACTCCCCAAAAACATGCT
CAAGAAAATACCTGCAGACTATTTTGACAGTTCAAAAGGAACGCTAAAAC
TACTGTGGGAGGATGAATGGCGTGCACTTGGTATCACACAAATGGACATC
GATCTAAGCAGAAGGAATAAAAAGCCCCGCCCTTTGCTAGAATCTGAACG
GGAGAGATTAGAGGAATTCATTGATTCTATTCATTATTCAGCCAGGCGCC
CCTTGAACTATCAGCCGCCAGTATCACAGTAAAGCTTGGGTTGGGAACAT
TATGAAGTGCACGAGCCAGAACCACATATTCTTCTCTTTAAATACTCAGA
TGACCAGTTCGAATACCGCCATGTCCAACTCCCCAAAAACATGCTCAAGA
AAATACCTGCAGACTATTTTGACAGTTCAAAAGGAACGCTAAAACTACTG
TGGGAGGATGAATGGCGTGCACTTGGTATCACACAAATGGACATCGATCT
AAGCAGAAGGAATAAAAAGCCCCGCCCTTTGCTAGAATCTGAACGGGAGA
GATTAGAGGAATTCATTGATTCTATTCATTATTCAGCCAGGCGCCCCTTG
AACTATCAGCCGCCAGTATCACAGTAAAGCTTGGGTTGGGAACATTATGA
AGTGCACGAGCCAGAACCACATATTCTTCTCTTTAAATACTCAGATGACC
AGTTCGAATACCGCCATGTCCAACTCCCCAAAAACATGCTCAAGAAAATA
CCTGCAGACTATTTTGACAGTTCAAAAGGAACGCTAAAACTACTGTGGGA
GGATGAATGGCGTGCACTTGGTATCACACAAATGGACATCGATCTAAGCA
GAAGGAATAAAAAGCCCCGCCCTTTGCTAGAATCTGAACGGGAGAGATTA
GAGGAATTCATTGATTCTATTCATTATTCAGCCAGGCGCCCCTTGAACTA
TCAGCCGCCAGTATCACAGTAAAGCTTGGGTTGGGAACATTATGAAGTGC
ACGAGCCAGAACCACATATTCTTCTCTTTAAATACTCAGATGACCAGTTC
GAATACCGCCATGTCCAACTCCCCAAAAACATGCTCAAGAAAATACCTGC
AGACTATTTTGACAGTTCAAAAGGAACGCTAAAACTACTGTGGGAGGATG
AATGGCGTGCACTTGGTATCACACAAATGGACATCGATCTAAGCAGAAGG
AATAAAAAGCCCCGCCCTTTGCTAGAATCTGAACGGGAGAGATTAGAGGA
ATTCATTGATTCTATTCATTATTCAGCCAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0016538cyclin-dependent protein serine/threonine kinase regulator activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CKS1KJC3_006980Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006980-T1KJC3_006980-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006980-T1.cdsKJC3_006980-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006980-T1.utr3p1KJC3_006980-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006980-T1.exon6KJC3_006980-T1.exon6Aspergillus niger KJC3exon
KJC3_006980-T1.exon5KJC3_006980-T1.exon5Aspergillus niger KJC3exon
KJC3_006980-T1.exon4KJC3_006980-T1.exon4Aspergillus niger KJC3exon
KJC3_006980-T1.exon3KJC3_006980-T1.exon3Aspergillus niger KJC3exon
KJC3_006980-T1.exon2KJC3_006980-T1.exon2Aspergillus niger KJC3exon
KJC3_006980-T1.exon1KJC3_006980-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_006980-T1.utr5p3KJC3_006980-T1.utr5p3Aspergillus niger KJC3five_prime_UTR
KJC3_006980-T1.utr5p2KJC3_006980-T1.utr5p2Aspergillus niger KJC3five_prime_UTR
KJC3_006980-T1.utr5p1KJC3_006980-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036858
DBxrefInterPro:IPR000789
DBxrefPFAM:PF01111
ProductCyclin-dependent kinases regulatory subunit (Cell division control protein cks1)
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch5supercontigch5:1111034..1112301 -
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