You are here

Home

KJC3_007017-T1, KJC3_007017-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_007017-T1
Unique NameKJC3_007017-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch5:1220277..1221825-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_007017-T1 ID=KJC3_007017-T1|Name=KJC3_007017-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1549bp|location=Sequence derived from alignment at ch5:1220277..1221825- (Aspergillus niger KJC3)
CTTCCGCCCACCACAACCACCACCTTCACCCCATTTTCACCTTCACCCCC
GGCTGGGTTGATCCTTGCAGGCAATTAATTGACAACTGCAAGTCCATTCG
TTCATTGCATCTATCGCGAGCAAAACACCAATACTTCTGTCTCTACTATG
ACCTCTGTCTAACAAACACCATCACCGACCCAACATCACCCGCCCAAACC
TACACTCACGACATCACCCTTTACCAGACACACACACACACACACACACA
CACACACACACACACACACACACACACACACACACACACACACACACACA
CACACACACACACACACACACACACGCCACAGCCAGATAGAAGCATAACA
AAACCAAAATGGTCAACTGGCTCACCCTCGCCGTCCCCTTCGCCTACCTC
GGCGTCCTCCTCGGCTCCCTCGCAACCTTCTCCTCCCTCTACCGCAAGCG
CAAAGCCCGTACGTCCTTTCCTTCTTCCCCCTTCTTCCTCCCCCTCCAAC
CCCCCAAACCATCCCAACTAACCAAAAGAAAAACAGGCAAGTCCCTCTCC
CTGGAACCCTGGTTCCCGCCACACACGCAACGCGACATCTACTTCTCCCT
CCTACACCTCGACCCCTCCGCCAGCAATGACAACAAAGGAACCGGCAAGA
AACCGCCCTCCTCCGTGCCCGACAGCGTCCTGAAATCCGCTCTCCTGCGT
CGCGCCATCGAAGACATTAAACGCGTCATGGCCCTGCGCACGCAGAAGGG
CGCCCTCGCGATGCTCCTCCAGCGCGGTAGTGTCGGGGATGATCTGTGGC
AGAGGTTTCTGCGTGCCGAGAAAGAAATGGAGGATGAGGTTAGGGATGTT
GTTGCTGAGGTAATACCCCTTCCCTTTGGGTTGGTCAGGGAATGATTGCT
AATTCATATGAAATGAACAGGCAAACGCCTACGTCCCCGGCTGGGGCCAA
ACGATCTTCCAATCCGCTAATGAAATGCTGAACAATGCTATTTTCCGTGA
ACGGATGGAGAAGCAGCAGGCTAAGTTGGAGGAGGAGAAGCAGTGGTGGG
AGAAGAGGAAGGAGGGGTATATGAAGGAGTTGGATGTGGAGGCGGAGAAG
AAGGAGGAGGTGGAGGCGGGTGAGAAGAAGGCTGCTGCTGCTCCAGCGGC
CGCGTCGACGACTACTAGTGAGGAAGGATCTGGTGTTCCTACGCCTGCTA
CTAAGACGCCCGAGTCGTCTGGTGCGCCGCCTTCGGTGGCGGGGAGTGAT
GATGATGCGGTGTTGGTGGAGGCGGATGAGCAGAGTGCTGAGAAGAAGGG
GAAGAAATAGATTTGACTTCATTTTGCTGGGTTTACGTTAAGTTATATGG
GCTCGGTGTATTATGATCAATATATATCCTTCTCTATTTTCGTTGTTGAT
GATATTAGATTGAGTGGCTGTAGCTGTTGAGTACGGAGCCTGTGTATGTA
GTGTGCAATTCAAGGTGGGATACTATTGTTACTACTGGTGTTGTATCCTG
GTCAGTTCCAGACCATTGCATACTGAAGCTGGCAGTACATGGTTAAGAA
back to top

Coding sequence (CDS) from alignment at ch5:1220277..1221825-

>KJC3_007017-T1 ID=KJC3_007017-T1|Name=KJC3_007017-T1|organism=Aspergillus niger KJC3|type=CDS|length=2439bp|location=Sequence derived from alignment at ch5:1220277..1221825- (Aspergillus niger KJC3)
GCAAACGCCTACGTCCCCGGCTGGGGCCAAACGATCTTCCAATCCGCTAA
TGAAATGCTGAACAATGCTATTTTCCGTGAACGGATGGAGAAGCAGCAGG
CTAAGTTGGAGGAGGAGAAGCAGTGGTGGGAGAAGAGGAAGGAGGGGTAT
ATGAAGGAGTTGGATGTGGAGGCGGAGAAGAAGGAGGAGGTGGAGGCGGG
TGAGAAGAAGGCTGCTGCTGCTCCAGCGGCCGCGTCGACGACTACTAGTG
AGGAAGGATCTGGTGTTCCTACGCCTGCTACTAAGACGCCCGAGTCGTCT
GGTGCGCCGCCTTCGGTGGCGGGGAGTGATGATGATGCGGTGTTGGTGGA
GGCGGATGAGCAGAGTGCTGAGAAGAAGGGGAAGAAATAGGCAAGTCCCT
CTCCCTGGAACCCTGGTTCCCGCCACACACGCAACGCGACATCTACTTCT
CCCTCCTACACCTCGACCCCTCCGCCAGCAATGACAACAAAGGAACCGGC
AAGAAACCGCCCTCCTCCGTGCCCGACAGCGTCCTGAAATCCGCTCTCCT
GCGTCGCGCCATCGAAGACATTAAACGCGTCATGGCCCTGCGCACGCAGA
AGGGCGCCCTCGCGATGCTCCTCCAGCGCGGTAGTGTCGGGGATGATCTG
TGGCAGAGGTTTCTGCGTGCCGAGAAAGAAATGGAGGATGAGGTTAGGGA
TGTTGTTGCTGAGATGGTCAACTGGCTCACCCTCGCCGTCCCCTTCGCCT
ACCTCGGCGTCCTCCTCGGCTCCCTCGCAACCTTCTCCTCCCTCTACCGC
AAGCGCAAAGCCCGCAAACGCCTACGTCCCCGGCTGGGGCCAAACGATCT
TCCAATCCGCTAATGAAATGCTGAACAATGCTATTTTCCGTGAACGGATG
GAGAAGCAGCAGGCTAAGTTGGAGGAGGAGAAGCAGTGGTGGGAGAAGAG
GAAGGAGGGGTATATGAAGGAGTTGGATGTGGAGGCGGAGAAGAAGGAGG
AGGTGGAGGCGGGTGAGAAGAAGGCTGCTGCTGCTCCAGCGGCCGCGTCG
ACGACTACTAGTGAGGAAGGATCTGGTGTTCCTACGCCTGCTACTAAGAC
GCCCGAGTCGTCTGGTGCGCCGCCTTCGGTGGCGGGGAGTGATGATGATG
CGGTGTTGGTGGAGGCGGATGAGCAGAGTGCTGAGAAGAAGGGGAAGAAA
TAGGCAAGTCCCTCTCCCTGGAACCCTGGTTCCCGCCACACACGCAACGC
GACATCTACTTCTCCCTCCTACACCTCGACCCCTCCGCCAGCAATGACAA
CAAAGGAACCGGCAAGAAACCGCCCTCCTCCGTGCCCGACAGCGTCCTGA
AATCCGCTCTCCTGCGTCGCGCCATCGAAGACATTAAACGCGTCATGGCC
CTGCGCACGCAGAAGGGCGCCCTCGCGATGCTCCTCCAGCGCGGTAGTGT
CGGGGATGATCTGTGGCAGAGGTTTCTGCGTGCCGAGAAAGAAATGGAGG
ATGAGGTTAGGGATGTTGTTGCTGAGATGGTCAACTGGCTCACCCTCGCC
GTCCCCTTCGCCTACCTCGGCGTCCTCCTCGGCTCCCTCGCAACCTTCTC
CTCCCTCTACCGCAAGCGCAAAGCCCGCAAACGCCTACGTCCCCGGCTGG
GGCCAAACGATCTTCCAATCCGCTAATGAAATGCTGAACAATGCTATTTT
CCGTGAACGGATGGAGAAGCAGCAGGCTAAGTTGGAGGAGGAGAAGCAGT
GGTGGGAGAAGAGGAAGGAGGGGTATATGAAGGAGTTGGATGTGGAGGCG
GAGAAGAAGGAGGAGGTGGAGGCGGGTGAGAAGAAGGCTGCTGCTGCTCC
AGCGGCCGCGTCGACGACTACTAGTGAGGAAGGATCTGGTGTTCCTACGC
CTGCTACTAAGACGCCCGAGTCGTCTGGTGCGCCGCCTTCGGTGGCGGGG
AGTGATGATGATGCGGTGTTGGTGGAGGCGGATGAGCAGAGTGCTGAGAA
GAAGGGGAAGAAATAGGCAAGTCCCTCTCCCTGGAACCCTGGTTCCCGCC
ACACACGCAACGCGACATCTACTTCTCCCTCCTACACCTCGACCCCTCCG
CCAGCAATGACAACAAAGGAACCGGCAAGAAACCGCCCTCCTCCGTGCCC
GACAGCGTCCTGAAATCCGCTCTCCTGCGTCGCGCCATCGAAGACATTAA
ACGCGTCATGGCCCTGCGCACGCAGAAGGGCGCCCTCGCGATGCTCCTCC
AGCGCGGTAGTGTCGGGGATGATCTGTGGCAGAGGTTTCTGCGTGCCGAG
AAAGAAATGGAGGATGAGGTTAGGGATGTTGTTGCTGAGATGGTCAACTG
GCTCACCCTCGCCGTCCCCTTCGCCTACCTCGGCGTCCTCCTCGGCTCCC
TCGCAACCTTCTCCTCCCTCTACCGCAAGCGCAAAGCCC
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0031207Sec62/Sec63 complex
Vocabulary: Biological Process
TermDefinition
GO:0031204posttranslational protein targeting to membrane, translocation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_007017KJC3_007017Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007017-T1KJC3_007017-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007017-T1.cdsKJC3_007017-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007017-T1.utr3p1KJC3_007017-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007017-T1.exon3KJC3_007017-T1.exon3Aspergillus niger KJC3exon
KJC3_007017-T1.exon2KJC3_007017-T1.exon2Aspergillus niger KJC3exon
KJC3_007017-T1.exon1KJC3_007017-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007017-T1.utr5p1KJC3_007017-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09264TQ5
DBxrefInterPro:IPR018624
DBxrefPFAM:PF09802
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch5supercontigch5:1220277..1221825 -
Powered by Drupal