You are here

Home

KJC3_007105-T1, KJC3_007105-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_007105-T1
Unique NameKJC3_007105-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch5:1461232..1462149-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_007105-T1 ID=KJC3_007105-T1|Name=KJC3_007105-T1|organism=Aspergillus niger KJC3|type=mRNA|length=918bp|location=Sequence derived from alignment at ch5:1461232..1462149- (Aspergillus niger KJC3)
AGAACACACCATTCAAGATGCCTCAAGCCCAGCCCGAGTTGAAGAAGGTA
TGATATTCGCGATTAATACCCCGCCAAACTTTCCCCGATACAGAGCACCG
AAGCTAACATTGCGGTTTTCCAACAGTACATGGAAAAGCGGGTATTCTGC
CAACTGAACGGCAACCGCAAAGTCATTGGTATCCTGCGAGGCTATGATGT
ACGTCGCGCTTGTGCCCCCTGGATTTCTACTTTCCTGCCTGCTGTGTTGC
TGTTATACGGGTTGATATGCCTTGGATGGGGTCGAAGATTGAGATGTTCT
TGGGTTCAATCCATCGAGTGAAAGAGGGGGCGGGGAGAGTGTGTGTATGT
GTGTATAGGTTACTGACGTCTGCGCTTGTCTATACAGGTGTTCATGAACA
TTGTCCTTGACGAGGCTTTCGAGGAGAAGCAGGGTGGTGAGAAGGTTGCT
ATCGGCATGATTGTATGTGGCTAGTCCCATTCCCGGACGTCTACGTTTGG
TCTGCAAACTGGGAGGGGCAGGAAGCTAATGGCTATCTATTCGTCTTAAT
AGGTCATTCGCGGTAACTCGGTTGTTATGCTCGAGGTCAGTATCACCTGC
CATAGGACTACGATTGATGGCGTGCCTTATCAAGAGACTAACCTTTTGTA
CTTAAAATAGGCCCTGGAACGTATCAGCGACAAATAAAGTGCTGTGGGTG
GACGGGAAAGTCAACATGTCTTTTTATACCTTCACTGTGGGAATGATTTA
ATTGCAATGGAGTTCACGGGTTGGTTGCTCACGGAATGATCGATGGCATC
TCGCTTTCAAAAGGAAACAGAAAAGAAATCTTCATTTCAAACAAATTACG
AGAAACACTTCAAGTGCAGAGGTCTGGAGTATACCAGATTACGGCAGTCT
TTTTTTAAAGAGGAAGAG
back to top

Coding sequence (CDS) from alignment at ch5:1461232..1462149-

>KJC3_007105-T1 ID=KJC3_007105-T1|Name=KJC3_007105-T1|organism=Aspergillus niger KJC3|type=CDS|length=1185bp|location=Sequence derived from alignment at ch5:1461232..1462149- (Aspergillus niger KJC3)
GCCCTGGAACGTATCAGCGACAAATAAGTCATTCGCGGTAACTCGGTTGT
TATGCTCGAGGTGTTCATGAACATTGTCCTTGACGAGGCTTTCGAGGAGA
AGCAGGGTGGTGAGAAGGTTGCTATCGGCATGATTTACATGGAAAAGCGG
GTATTCTGCCAACTGAACGGCAACCGCAAAGTCATTGGTATCCTGCGAGG
CTATGATATGCCTCAAGCCCAGCCCGAGTTGAAGAAGGCCCTGGAACGTA
TCAGCGACAAATAAGTCATTCGCGGTAACTCGGTTGTTATGCTCGAGGTG
TTCATGAACATTGTCCTTGACGAGGCTTTCGAGGAGAAGCAGGGTGGTGA
GAAGGTTGCTATCGGCATGATTTACATGGAAAAGCGGGTATTCTGCCAAC
TGAACGGCAACCGCAAAGTCATTGGTATCCTGCGAGGCTATGATATGCCT
CAAGCCCAGCCCGAGTTGAAGAAGGCCCTGGAACGTATCAGCGACAAATA
AGTCATTCGCGGTAACTCGGTTGTTATGCTCGAGGTGTTCATGAACATTG
TCCTTGACGAGGCTTTCGAGGAGAAGCAGGGTGGTGAGAAGGTTGCTATC
GGCATGATTTACATGGAAAAGCGGGTATTCTGCCAACTGAACGGCAACCG
CAAAGTCATTGGTATCCTGCGAGGCTATGATATGCCTCAAGCCCAGCCCG
AGTTGAAGAAGGCCCTGGAACGTATCAGCGACAAATAAGTCATTCGCGGT
AACTCGGTTGTTATGCTCGAGGTGTTCATGAACATTGTCCTTGACGAGGC
TTTCGAGGAGAAGCAGGGTGGTGAGAAGGTTGCTATCGGCATGATTTACA
TGGAAAAGCGGGTATTCTGCCAACTGAACGGCAACCGCAAAGTCATTGGT
ATCCTGCGAGGCTATGATATGCCTCAAGCCCAGCCCGAGTTGAAGAAGGC
CCTGGAACGTATCAGCGACAAATAAGTCATTCGCGGTAACTCGGTTGTTA
TGCTCGAGGTGTTCATGAACATTGTCCTTGACGAGGCTTTCGAGGAGAAG
CAGGGTGGTGAGAAGGTTGCTATCGGCATGATTTACATGGAAAAGCGGGT
ATTCTGCCAACTGAACGGCAACCGCAAAGTCATTGGTATCCTGCGAGGCT
ATGATATGCCTCAAGCCCAGCCCGAGTTGAAGAAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
Vocabulary: Biological Process
TermDefinition
GO:0000387spliceosomal snRNP assembly
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SMG1KJC3_007105Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007105-T1KJC3_007105-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007105-T1.cdsKJC3_007105-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007105-T1.utr3p1KJC3_007105-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007105-T1.exon5KJC3_007105-T1.exon5Aspergillus niger KJC3exon
KJC3_007105-T1.exon4KJC3_007105-T1.exon4Aspergillus niger KJC3exon
KJC3_007105-T1.exon3KJC3_007105-T1.exon3Aspergillus niger KJC3exon
KJC3_007105-T1.exon2KJC3_007105-T1.exon2Aspergillus niger KJC3exon
KJC3_007105-T1.exon1KJC3_007105-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007105-T1.utr5p1KJC3_007105-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR010920
DBxrefInterPro:IPR034098
DBxrefInterPro:IPR001163
DBxrefPFAM:PF01423
ProductSerine/threonine-protein kinase smg1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch5supercontigch5:1461232..1462149 -
Powered by Drupal