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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:1531849..1533930+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007128-T1 ID=KJC3_007128-T1|Name=KJC3_007128-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2082bp|location=Sequence derived from alignment at ch5:1531849..1533930+ (Aspergillus niger KJC3)
GACAGCCGGAATGCAAAGTCGGTTGGTTTGAGACTCTAAAAGGTATGCAT
AGTCCGTGTTAAACACTTCAGCTGAGCCTATCTCAAAGCTCTTGAAATGT
GTTTTTGTGTTGTTCAACAGACATTGAAATGTCCCTCTTCTGTGTACTCG
GGAGTTACTATGTCAATAACTGCTCCGTTCTTACTCTGTTCTACCTTGTT
TGGTTCTGTGTCTGTCTCTATGAATCGGTAGTTCCGCTGCTTTACTTTTT
GCGCTACCTCTTACTAACTACAAGTGTAAAGAGCTTTCAGCAGGCGATGC
CACAACCTTGAATCAAACGACCTTTTGCTCGGTGTTCTGTTCCGCAGAAG
CAGCGCTGGAATCCTTCTTCGTCGCTACTCTCCCCCTCAAGCGCACCCAA
GATAATACAACTATAGCTCAACGAGACAAAACGAGACAATGGAACGGCCT
GCGAAAAGACCACGCTTCTCCATGGGGCCGGAACCCGAGGAAGAGCTGGA
CGATATGGACATTCACGAAGCACGTGCGCAGAATGATCTCCGTTTGAAGT
CGATCTTCGAAGGCATTTTTGAAAAATACGGCAAGGACTTTACCGACGTT
GGCGACGAAATTGATTTGCAAACCGGAAATATAATTGTGAACAATGGCCA
CATCCAGGCCATGGAGGGTGAAGATGATACCGGGGAACAGAATGGTTGGC
TGTTCGAGACGGACTTTACTGCACCTTCAAATCCCGAAGCGGATAATGTT
GCGTTGGGCAGTTCTGCTCATTCTCCTGATGCAGAAGAAATCGGAGGTGA
TGCTGCAGGAGATGACGGCGGCACGCAATCGCAGCATCCACCGGCGTCGA
TGCCATCGCAAACAGGGCTGGTCCGGGACCAGCCATGGGACGCCATTATA
GGCGAAGCAGCCAATGACGACCCGGACACCAACGACGAGGGGTCTAGTTC
GGACTCGCTGCTGGATACTGCATTATGCGTCCAGAATAACCCGGGTGGCT
CTCGGGGCCGAAAGGTGACGGCAGATGCCACAGGGAAACCGGCCATCGAA
AAAGCAAACTCTGCGGCTGAAGCATCCGCCCAATCCAAGGAAGTCAAGTT
CAGTGAGGCGGTGGAGGCGATATGGCGCGTTCCTGAAATTAGCGGGGACT
TTGCTACGCCTACATGGAACAAGTCACGTCCTGCGCCTTCTTTCAATACT
GTGCGGTCTCAGTCTCCACCGGGATCAAGATCTATCTGGGCACTTCCTTG
GTCCTCTCGACGGGGCTCTGGACAAAAACGCGCAACGAAGCCTCAGAGGT
CACCGCAGGGGAGGAAGCATCATTCCAGCCCCGTCGTGTGCGACTGGTCC
TTTGCAGAGACGCCAGACGGAGACGAATCCGACGATCCGTTGCAGGAAGA
CTATGAGCCCTCGCCGACGCCCAAACGGGGCATGGAGATCCGAGGAAAGC
GCTCGGAATCACACACCCCAAGCCGTGCGAAGAACCGATGCGCGTCTTGC
CAGCAATACTTTGTTCGTTCCGATTACATTTCCCATCTGAAGGACATTCT
ATCCCAGGCCCCCGATGGCCAACATGATCAGGCAGCCATGCGGAAGCATC
TGGCCGCCATAACCGACTCTCATGATTCAGAGAAGCGGGCAGCAGCGACC
AGCACTTCCGCCCAAAAGAGTGGGGCTTCTTCTGAAAGTATAACGAATGT
ATCGGCGGAGAACCCTCCAGGCGATCCTGATACGACGACGCCTACGAAGA
AACGTGTTCGGACGTACATTAGTCCAGATGAAGCAAGGTTAATTATTGAG
ATGAGGCAAGTACAGGGGAGAAAATGGAACGAGATTGTCGACCAACTTCC
ACACAAAAACTTGCCCCAACTCCTTAATTGGAATAAAACGCACTGGAGTG
AACGCCGAGCGAACCCGCCTCCATTGTCCAGACCGTGGACCAAACAGGAG
CGGGAAGAGCTGACCAAAATCAAAGACCAACACAACCTCTCGTGGGCCAC
CGTCCGTGCAAGACTTCCTGGACGCCCACTTGCGGAGATCGAATTTGAAC
TATTGCAGCTCTGGAGTGGCGGAGCCGTTTAG back to topCoding sequence (CDS) from alignment at ch5:1531849..1533930+ >KJC3_007128-T1 ID=KJC3_007128-T1|Name=KJC3_007128-T1|organism=Aspergillus niger KJC3|type=CDS|length=1644bp|location=Sequence derived from alignment at ch5:1531849..1533930+ (Aspergillus niger KJC3)
ATGGAACGGCCTGCGAAAAGACCACGCTTCTCCATGGGGCCGGAACCCGA
GGAAGAGCTGGACGATATGGACATTCACGAAGCACGTGCGCAGAATGATC
TCCGTTTGAAGTCGATCTTCGAAGGCATTTTTGAAAAATACGGCAAGGAC
TTTACCGACGTTGGCGACGAAATTGATTTGCAAACCGGAAATATAATTGT
GAACAATGGCCACATCCAGGCCATGGAGGGTGAAGATGATACCGGGGAAC
AGAATGGTTGGCTGTTCGAGACGGACTTTACTGCACCTTCAAATCCCGAA
GCGGATAATGTTGCGTTGGGCAGTTCTGCTCATTCTCCTGATGCAGAAGA
AATCGGAGGTGATGCTGCAGGAGATGACGGCGGCACGCAATCGCAGCATC
CACCGGCGTCGATGCCATCGCAAACAGGGCTGGTCCGGGACCAGCCATGG
GACGCCATTATAGGCGAAGCAGCCAATGACGACCCGGACACCAACGACGA
GGGGTCTAGTTCGGACTCGCTGCTGGATACTGCATTATGCGTCCAGAATA
ACCCGGGTGGCTCTCGGGGCCGAAAGGTGACGGCAGATGCCACAGGGAAA
CCGGCCATCGAAAAAGCAAACTCTGCGGCTGAAGCATCCGCCCAATCCAA
GGAAGTCAAGTTCAGTGAGGCGGTGGAGGCGATATGGCGCGTTCCTGAAA
TTAGCGGGGACTTTGCTACGCCTACATGGAACAAGTCACGTCCTGCGCCT
TCTTTCAATACTGTGCGGTCTCAGTCTCCACCGGGATCAAGATCTATCTG
GGCACTTCCTTGGTCCTCTCGACGGGGCTCTGGACAAAAACGCGCAACGA
AGCCTCAGAGGTCACCGCAGGGGAGGAAGCATCATTCCAGCCCCGTCGTG
TGCGACTGGTCCTTTGCAGAGACGCCAGACGGAGACGAATCCGACGATCC
GTTGCAGGAAGACTATGAGCCCTCGCCGACGCCCAAACGGGGCATGGAGA
TCCGAGGAAAGCGCTCGGAATCACACACCCCAAGCCGTGCGAAGAACCGA
TGCGCGTCTTGCCAGCAATACTTTGTTCGTTCCGATTACATTTCCCATCT
GAAGGACATTCTATCCCAGGCCCCCGATGGCCAACATGATCAGGCAGCCA
TGCGGAAGCATCTGGCCGCCATAACCGACTCTCATGATTCAGAGAAGCGG
GCAGCAGCGACCAGCACTTCCGCCCAAAAGAGTGGGGCTTCTTCTGAAAG
TATAACGAATGTATCGGCGGAGAACCCTCCAGGCGATCCTGATACGACGA
CGCCTACGAAGAAACGTGTTCGGACGTACATTAGTCCAGATGAAGCAAGG
TTAATTATTGAGATGAGGCAAGTACAGGGGAGAAAATGGAACGAGATTGT
CGACCAACTTCCACACAAAAACTTGCCCCAACTCCTTAATTGGAATAAAA
CGCACTGGAGTGAACGCCGAGCGAACCCGCCTCCATTGTCCAGACCGTGG
ACCAAACAGGAGCGGGAAGAGCTGACCAAAATCAAAGACCAACACAACCT
CTCGTGGGCCACCGTCCGTGCAAGACTTCCTGGACGCCCACTTGCGGAGA
TCGAATTTGAACTATTGCAGCTCTGGAGTGGCGGAGCCGTTTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0042393 | histone binding |
| GO:0046982 | protein heterodimerization activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR018465 |
| DBxref | InterPro:IPR009072 |
| DBxref | InterPro:IPR001005 |
| DBxref | PFAM:PF10384 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:1531849..1533930 + |
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