You are here

Home

KJC3_007349-T1, KJC3_007349-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_007349-T1
Unique NameKJC3_007349-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch5:2207402..2208545+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_007349-T1 ID=KJC3_007349-T1|Name=KJC3_007349-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1144bp|location=Sequence derived from alignment at ch5:2207402..2208545+ (Aspergillus niger KJC3)
ATGCTGGCCGAAACCGAAAACCCCGTCAGCAACGGAGATCCACCGAAGCT
CCGGGCTGCTTGTGAAAATTGCAGACAGTCGAAGGTGAAATGTAACCTAT
CTGGGAAGGACACCTGCATTCGCTGTATGCGTCATGGGCTGCCCTGTCGG
TATCGCGTCGCCAATCGTTCTGGGAAGCCAAAAGGGAGCAAGAATCGGGC
CACGCTGCGAAAACTTGGGCAGTTGCAAGACGAGAAGAAGCCTACAATAC
CCGCCAACGGATGGGTAGAATCGGTAGCCAAAGGACAACCGCCTCGTGTG
AGCTATGATACTGACAACGGGGTCGACGCAACGGTGCGTTTCATCTGTGC
TCGTTAAGGGTAATATCTAATGGTTATAGAGTACGCAAAGCACGAGCCCA
GCCAGTCAGTCCAGAAGCCCTGATAGCCACGGGGCACATATGACTGACAC
GACGTTGCTGACCGATCCAACCATGGAGTATCCGTCAATAGGGGAGACGT
TGGCCCCTATGTTCAATCCCTCCATGTCACCACCATTCCTTCCCAAAGAG
TTCATCTCCCGGGGCTTCACCGGCTGTCCGCTCGCCGTCCACATCCCCAA
CCCATTACAGCCCTGTGAATGCACCAGCGCACTCCTATACAACGTAAATC
AGATCCGGACCATGCTGGCAGACAGCATGCATCTACGGCTGGACCAGATT
TTACAGGGCATCAAGATCGCATTGACCGTGTGTCGGAACTTTCTCCGATG
TCCCAATTGCCACAAGGACCACACAAACCTACTGTATTCAGTATCCATAC
TGGATATCACACTCCAGCTCTTCGAGTATTGGACATCGTATGAGCTCTCA
TCCGCGCCGGCTGGCGGCCACAACATGATCGTCCCCTACGGCGACTACGA
GATGGGCCCGGACGAGACGCGCCGGATCCGCCGGTACCTCATCCGAGGAC
GGGCCCTGCAGTGCCGAGAGGTACTGGGACTGCTCAAGGACGCAGTTGAA
ATGAGCCGACATCTGAGTCCCGAGCTGCGGGAGCTCAATGGGACGGACGG
ATTGGAGGTGGAATGGTTCCAGCAGATGCTGGGGGGGTATGATACGATGG
TTGAGACGATTTTACGAGCGATGTCGGATAATCTGTGCACGTAG
back to top

Coding sequence (CDS) from alignment at ch5:2207402..2208545+

>KJC3_007349-T1 ID=KJC3_007349-T1|Name=KJC3_007349-T1|organism=Aspergillus niger KJC3|type=CDS|length=2196bp|location=Sequence derived from alignment at ch5:2207402..2208545+ (Aspergillus niger KJC3)
ATGCTGGCCGAAACCGAAAACCCCGTCAGCAACGGAGATCCACCGAAGCT
CCGGGCTGCTTGTGAAAATTGCAGACAGTCGAAGGTGAAATGTAACCTAT
CTGGGAAGGACACCTGCATTCGCTGTATGCGTCATGGGCTGCCCTGTCGG
TATCGCGTCGCCAATCGTTCTGGGAAGCCAAAAGGGAGCAAGAATCGGGC
CACGCTGCGAAAACTTGGGCAGTTGCAAGACGAGAAGAAGCCTACAATAC
CCGCCAACGGATGGGTAGAATCGGTAGCCAAAGGACAACCGCCTCGTGTG
AGCTATGATACTGACAACGGGGTCGACGCAACGAGTACGCAAAGCACGAG
CCCAGCCAGTCAGTCCAGAAGCCCTGATAGCCACGGGGCACATATGACTG
ACACGACGTTGCTGACCGATCCAACCATGGAGTATCCGTCAATAGGGGAG
ACGTTGGCCCCTATGTTCAATCCCTCCATGTCACCACCATTCCTTCCCAA
AGAGTTCATCTCCCGGGGCTTCACCGGCTGTCCGCTCGCCGTCCACATCC
CCAACCCATTACAGCCCTGTGAATGCACCAGCGCACTCCTATACAACGTA
AATCAGATCCGGACCATGCTGGCAGACAGCATGCATCTACGGCTGGACCA
GATTTTACAGGGCATCAAGATCGCATTGACCGTGTGTCGGAACTTTCTCC
GATGTCCCAATTGCCACAAGGACCACACAAACCTACTGTATTCAGTATCC
ATACTGGATATCACACTCCAGCTCTTCGAGTATTGGACATCGTATGAGCT
CTCATCCGCGCCGGCTGGCGGCCACAACATGATCGTCCCCTACGGCGACT
ACGAGATGGGCCCGGACGAGACGCGCCGGATCCGCCGGTACCTCATCCGA
GGACGGGCCCTGCAGTGCCGAGAGGTACTGGGACTGCTCAAGGACGCAGT
TGAAATGAGCCGACATCTGAGTCCCGAGCTGCGGGAGCTCAATGGGACGG
ACGGATTGGAGGTGGAATGGTTCCAGCAGATGCTGGGGGGGTATGATACG
ATGGTTGAGACGATTTTACGAGCGATGTCGGATAATCTGTGCACGTAGAT
GCTGGCCGAAACCGAAAACCCCGTCAGCAACGGAGATCCACCGAAGCTCC
GGGCTGCTTGTGAAAATTGCAGACAGTCGAAGGTGAAATGTAACCTATCT
GGGAAGGACACCTGCATTCGCTGTATGCGTCATGGGCTGCCCTGTCGGTA
TCGCGTCGCCAATCGTTCTGGGAAGCCAAAAGGGAGCAAGAATCGGGCCA
CGCTGCGAAAACTTGGGCAGTTGCAAGACGAGAAGAAGCCTACAATACCC
GCCAACGGATGGGTAGAATCGGTAGCCAAAGGACAACCGCCTCGTGTGAG
CTATGATACTGACAACGGGGTCGACGCAACGAGTACGCAAAGCACGAGCC
CAGCCAGTCAGTCCAGAAGCCCTGATAGCCACGGGGCACATATGACTGAC
ACGACGTTGCTGACCGATCCAACCATGGAGTATCCGTCAATAGGGGAGAC
GTTGGCCCCTATGTTCAATCCCTCCATGTCACCACCATTCCTTCCCAAAG
AGTTCATCTCCCGGGGCTTCACCGGCTGTCCGCTCGCCGTCCACATCCCC
AACCCATTACAGCCCTGTGAATGCACCAGCGCACTCCTATACAACGTAAA
TCAGATCCGGACCATGCTGGCAGACAGCATGCATCTACGGCTGGACCAGA
TTTTACAGGGCATCAAGATCGCATTGACCGTGTGTCGGAACTTTCTCCGA
TGTCCCAATTGCCACAAGGACCACACAAACCTACTGTATTCAGTATCCAT
ACTGGATATCACACTCCAGCTCTTCGAGTATTGGACATCGTATGAGCTCT
CATCCGCGCCGGCTGGCGGCCACAACATGATCGTCCCCTACGGCGACTAC
GAGATGGGCCCGGACGAGACGCGCCGGATCCGCCGGTACCTCATCCGAGG
ACGGGCCCTGCAGTGCCGAGAGGTACTGGGACTGCTCAAGGACGCAGTTG
AAATGAGCCGACATCTGAGTCCCGAGCTGCGGGAGCTCAATGGGACGGAC
GGATTGGAGGTGGAATGGTTCCAGCAGATGCTGGGGGGGTATGATACGAT
GGTTGAGACGATTTTACGAGCGATGTCGGATAATCTGTGCACGTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0042025host cell nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_007349KJC3_007349Aspergillus niger KJC3gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007349-T1.exon1KJC3_007349-T1.exon1Aspergillus niger KJC3exon
KJC3_007349-T1.exon2KJC3_007349-T1.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007349-T1.cdsKJC3_007349-T1.cdsAspergillus niger KJC3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007349-T1KJC3_007349-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR036864
DBxrefInterPro:IPR001138
DBxrefPFAM:PF00172
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch5supercontigch5:2207402..2208545 +
Powered by Drupal