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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:2337544..2340502+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007396-T1 ID=KJC3_007396-T1|Name=KJC3_007396-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2959bp|location=Sequence derived from alignment at ch5:2337544..2340502+ (Aspergillus niger KJC3)
CTACTGCCATCCACAACTCTCCCACCTCCTATTGCGCCTCCATCGCCAAC
TTGGTGTCGCGCCTCTTCTGGATATATCGATTTTGGTACAGATCGCATGC
CCGTTGCAATTTAACCGTTTTTCAAGAGTTTGCGCTCGCTAGGGTTGAGA
TTGACCGCCGCAGTCGCGGCTTTTTCCGTCATCATGTCGCAGGATACAGG
ATTGTTCAGCATCAGGCGCACCCGCGAGGTATGTGCCTTGCTTCCTTCTG
GCCTACCCCTCTTGTACAATACTAATCTAGCTGTCTCAGTCTATGGCGAT
GGGTAGCCAAAATTACTCCGCTCTTCCGCAACCCTCCTCGGCCTTGAAGC
GCACCAGCTCCATTGGGTACCAGAATCCTCCTTTCACCTCTCAGCACACG
CGTATGTCGCTTCTCAACTCCGCCAGTCGCCCCCAACAGCCCAACTTTCA
GCGTTCTTCTTCTGGTGGAGGCTTTGGTGCCGATGCCGGTCTCTCATCAG
TCAGACGCTCCGTCTCCAGTAATATGTTCCATGGTCCTAGTGTCGGGCGC
CCAAGCTTTGCTCCCGGGCCGATGTCGTCGCAAAGCACAGCAGGGTCGCA
AGGATTGCAACGGAGGAGTAGTGTCTTTTCACGACCATCTGTGGGTGGCG
CCATGGGTCATCATTCTTTCTTCACTCAAGTCCCGTCAGTTGCTGGTGTC
CCCAGGGACCCACGGCCACTCAGGGACAGGTCTTTCCAAGCTCGTATTGG
ACAAGAGCTCTTGGAATATCTGACGCATAACAATTTTGAGCTTGAGATGA
AGCATTCACTGGGGCAGAACACCTTACGGTCTCCTACTCAAAAAGATTTC
AACTACATCTTCCAGTGGCTGTATCATCGCATTGATCCCGGGTACAAGTT
TCAGAAGAGCATGGATGCGGAGGTACCACCTATTCTCAAGCAACTACGTT
ACCCCTACGAAAAGGGTATCACTAAGTCGCAGATTGCGGCTGTGGGAGGC
CAGAACTGGCCGACATTCCTCGGTATGCTGCATTGGTTGATGCAACTCGC
TCAGATGATGGATCGATATTTGCTCGGGGAATACGATGAAGCTTGCGCAG
AGATGGGAGTCGATGTATCCGGCGACCGGATTATCTTCCGTTTCCTTACA
AGTGCCTACCATGACTGGCTGCAAGGCGGGGAAGATGAGGATGACGCAAC
AGCAGAGAAGAGACTAGTACCTCACGTCGAAATGATGGCCCAGGAGTTTG
AAAGAGGAAATGAAAAATATGTTCAAGAGATGGAGTCTTTGGAAGCCGAA
AACCGAGCGCTACGTGACCAGATTGAAGAGATGGAGAAGAACGCTCCGGA
CATGGCCAAGCTAGACAAGCACTTCAGGATTTTGGAGGACGACAAGAGGA
AGTTTGAGGACTACAACCAGAATGTCCAGGGCAAGATCGAGAAATATGAG
ACCCGTATCAAATTCCTGGATGACGAGCTTAAGAAGACGGAGGATGACCT
GCAAGCCGCCGAAGAGGAGCGGGCTGGGCTTCAGGCCAGTGTTGACCAAC
AAGGCCTGACAATCCAGGATATTGACCGTATGAACACGGAACGTGAACGC
CTGCAGAGGAATCTTGACGATACGGTCAATCGGTTGGAAGAAACGCACGC
GCGGGTCATGGCAAAGGAGGCCGAGGCTAGTAGAAAACTCGAAGATTTAG
AGGAGATCGTCAAGGTCTACAACACGCTCGGATACCAGAATAGTTTGATT
CCTTCGTCAGCTGTCAATGCCAAGGGCGACGATTACGAACTCAGTCTCAA
CGTCAACGAGAGCAATTTCTCCGCCTCTCAGGTCGGTGGTCTAGCGAACC
GAATCTCTACCGATGGAGATCGACTATTGGCGGACCCGTTCACTGGCTAT
CACCCAGCACACTTGCTCAACCTCGATCTCCGCGGCATCGTGCGCAGCAA
TCTACAGGCTCTCCGGAAGGAGATCAACGAGCGCCGGAAGCGTGCCATTG
ATGATGACTTGGAACGACGCAATCTCTTGGACAACATCAAGGAAGCAATG
GACGAGAAGCGAAGCGAGGTTGAGGCTTTGGAGCATAAGGCACGTGCCGC
TGAAGAGGAATTCGAGCGGCTCAAGGAGGTCACCACAACGCAGAAGCTTG
CTTCGGATGCACAGATTGAAAAGATGGAGAAGGAGCTGGCCAAGATGCGA
GCCACGTTGGGCGAAAGCGTCCAACTGATGGAGCAGCGCGAGATGAATAC
TAACATTGAGTATGAACAATTGACTCTCCGCGCAAATGCGTTGCGTGAGG
AGCTACACACCAATGTGGAGAGCATGCTGAACGATGTCATCCGTTTCAAG
GTCCATATTCAAAAAGGTCTGGAAGACTACGAGAGCTTTGTTGTCGACGA
GGTCGAGCAGGAATTGGGTGGTGACATGCAGTTTGCAGATGAGGACATTG
AAATGGGAGTTGAAGAGGAAGAGGAGGAGCTTTGAATGATATTTCCGTGA
ATTCTGCGCCACGATGACGGTTCGAGTATTATGATTGATGATTGCGGGAA
GGAGTTTGGTTCGAGAAATCCGAGAAATCAGGCGTGTTTCATACTATCTT
GCCGGAATCTCACCGGCCAGAGAAAGGACGCATGTCTATATGCCCTGGAG
TCGCAGTGTCATAAACATTTTGTTCATTCTGCTGGTATCGTTGTCTACTA
CTGGGGCGCTATTGGGAGCTTGGTGGTTGGACTTGTGAGTTATGGGTATT
TTGGCTTGTTCGGTCGTGGGATTTTATCTTGTTTATGATACCTTTGATGT
TCAAATGCGCCATTAGTGTTGATAATTGCTAGATGTGGGTGTACATACAT
GCCATGCCTTTCACAGCCTTTATAAAAAACCGCATCCATCTGTAGTGCAA
TGACCGAAGTAACTCTATCAAACTGTTGTACATATTACTATCATATGATA
TGATACAGT back to topCoding sequence (CDS) from alignment at ch5:2337544..2340502+ >KJC3_007396-T1 ID=KJC3_007396-T1|Name=KJC3_007396-T1|organism=Aspergillus niger KJC3|type=CDS|length=4482bp|location=Sequence derived from alignment at ch5:2337544..2340502+ (Aspergillus niger KJC3)
ATGTCGCAGGATACAGGATTGTTCAGCATCAGGCGCACCCGCGAGTCTAT
GGCGATGGGTAGCCAAAATTACTCCGCTCTTCCGCAACCCTCCTCGGCCT
TGAAGCGCACCAGCTCCATTGGGTACCAGAATCCTCCTTTCACCTCTCAG
CACACGCGTATGTCGCTTCTCAACTCCGCCAGTCGCCCCCAACAGCCCAA
CTTTCAGCGTTCTTCTTCTGGTGGAGGCTTTGGTGCCGATGCCGGTCTCT
CATCAGTCAGACGCTCCGTCTCCAGTAATATGTTCCATGGTCCTAGTGTC
GGGCGCCCAAGCTTTGCTCCCGGGCCGATGTCGTCGCAAAGCACAGCAGG
GTCGCAAGGATTGCAACGGAGGAGTAGTGTCTTTTCACGACCATCTGTGG
GTGGCGCCATGGGTCATCATTCTTTCTTCACTCAAGTCCCGTCAGTTGCT
GGTGTCCCCAGGGACCCACGGCCACTCAGGGACAGGTCTTTCCAAGCTCG
TATTGGACAAGAGCTCTTGGAATATCTGACGCATAACAATTTTGAGCTTG
AGATGAAGCATTCACTGGGGCAGAACACCTTACGGTCTCCTACTCAAAAA
GATTTCAACTACATCTTCCAGTGGCTGTATCATCGCATTGATCCCGGGTA
CAAGTTTCAGAAGAGCATGGATGCGGAGGTACCACCTATTCTCAAGCAAC
TACGTTACCCCTACGAAAAGGGTATCACTAAGTCGCAGATTGCGGCTGTG
GGAGGCCAGAACTGGCCGACATTCCTCGGTATGCTGCATTGGTTGATGCA
ACTCGCTCAGATGATGGATCGATATTTGCTCGGGGAATACGATGAAGCTT
GCGCAGAGATGGGAGTCGATGTATCCGGCGACCGGATTATCTTCCGTTTC
CTTACAAGTGCCTACCATGACTGGCTGCAAGGCGGGGAAGATGAGGATGA
CGCAACAGCAGAGAAGAGACTAGTACCTCACGTCGAAATGATGGCCCAGG
AGTTTGAAAGAGGAAATGAAAAATATGTTCAAGAGATGGAGTCTTTGGAA
GCCGAAAACCGAGCGCTACGTGACCAGATTGAAGAGATGGAGAAGAACGC
TCCGGACATGGCCAAGCTAGACAAGCACTTCAGGATTTTGGAGGACGACA
AGAGGAAGTTTGAGGACTACAACCAGAATGTCCAGGGCAAGATCGAGAAA
TATGAGACCCGTATCAAATTCCTGGATGACGAGCTTAAGAAGACGGAGGA
TGACCTGCAAGCCGCCGAAGAGGAGCGGGCTGGGCTTCAGGCCAGTGTTG
ACCAACAAGGCCTGACAATCCAGGATATTGACCGTATGAACACGGAACGT
GAACGCCTGCAGAGGAATCTTGACGATACGGTCAATCGGTTGGAAGAAAC
GCACGCGCGGGTCATGGCAAAGGAGGCCGAGGCTAGTAGAAAACTCGAAG
ATTTAGAGGAGATCGTCAAGGTCTACAACACGCTCGGATACCAGAATAGT
TTGATTCCTTCGTCAGCTGTCAATGCCAAGGGCGACGATTACGAACTCAG
TCTCAACGTCAACGAGAGCAATTTCTCCGCCTCTCAGGTCGGTGGTCTAG
CGAACCGAATCTCTACCGATGGAGATCGACTATTGGCGGACCCGTTCACT
GGCTATCACCCAGCACACTTGCTCAACCTCGATCTCCGCGGCATCGTGCG
CAGCAATCTACAGGCTCTCCGGAAGGAGATCAACGAGCGCCGGAAGCGTG
CCATTGATGATGACTTGGAACGACGCAATCTCTTGGACAACATCAAGGAA
GCAATGGACGAGAAGCGAAGCGAGGTTGAGGCTTTGGAGCATAAGGCACG
TGCCGCTGAAGAGGAATTCGAGCGGCTCAAGGAGGTCACCACAACGCAGA
AGCTTGCTTCGGATGCACAGATTGAAAAGATGGAGAAGGAGCTGGCCAAG
ATGCGAGCCACGTTGGGCGAAAGCGTCCAACTGATGGAGCAGCGCGAGAT
GAATACTAACATTGAGTATGAACAATTGACTCTCCGCGCAAATGCGTTGC
GTGAGGAGCTACACACCAATGTGGAGAGCATGCTGAACGATGTCATCCGT
TTCAAGGTCCATATTCAAAAAGGTCTGGAAGACTACGAGAGCTTTGTTGT
CGACGAGGTCGAGCAGGAATTGGGTGGTGACATGCAGTTTGCAGATGAGG
ACATTGAAATGGGAGTTGAAGAGGAAGAGGAGGAGCTTTGAATGTCGCAG
GATACAGGATTGTTCAGCATCAGGCGCACCCGCGAGTCTATGGCGATGGG
TAGCCAAAATTACTCCGCTCTTCCGCAACCCTCCTCGGCCTTGAAGCGCA
CCAGCTCCATTGGGTACCAGAATCCTCCTTTCACCTCTCAGCACACGCGT
ATGTCGCTTCTCAACTCCGCCAGTCGCCCCCAACAGCCCAACTTTCAGCG
TTCTTCTTCTGGTGGAGGCTTTGGTGCCGATGCCGGTCTCTCATCAGTCA
GACGCTCCGTCTCCAGTAATATGTTCCATGGTCCTAGTGTCGGGCGCCCA
AGCTTTGCTCCCGGGCCGATGTCGTCGCAAAGCACAGCAGGGTCGCAAGG
ATTGCAACGGAGGAGTAGTGTCTTTTCACGACCATCTGTGGGTGGCGCCA
TGGGTCATCATTCTTTCTTCACTCAAGTCCCGTCAGTTGCTGGTGTCCCC
AGGGACCCACGGCCACTCAGGGACAGGTCTTTCCAAGCTCGTATTGGACA
AGAGCTCTTGGAATATCTGACGCATAACAATTTTGAGCTTGAGATGAAGC
ATTCACTGGGGCAGAACACCTTACGGTCTCCTACTCAAAAAGATTTCAAC
TACATCTTCCAGTGGCTGTATCATCGCATTGATCCCGGGTACAAGTTTCA
GAAGAGCATGGATGCGGAGGTACCACCTATTCTCAAGCAACTACGTTACC
CCTACGAAAAGGGTATCACTAAGTCGCAGATTGCGGCTGTGGGAGGCCAG
AACTGGCCGACATTCCTCGGTATGCTGCATTGGTTGATGCAACTCGCTCA
GATGATGGATCGATATTTGCTCGGGGAATACGATGAAGCTTGCGCAGAGA
TGGGAGTCGATGTATCCGGCGACCGGATTATCTTCCGTTTCCTTACAAGT
GCCTACCATGACTGGCTGCAAGGCGGGGAAGATGAGGATGACGCAACAGC
AGAGAAGAGACTAGTACCTCACGTCGAAATGATGGCCCAGGAGTTTGAAA
GAGGAAATGAAAAATATGTTCAAGAGATGGAGTCTTTGGAAGCCGAAAAC
CGAGCGCTACGTGACCAGATTGAAGAGATGGAGAAGAACGCTCCGGACAT
GGCCAAGCTAGACAAGCACTTCAGGATTTTGGAGGACGACAAGAGGAAGT
TTGAGGACTACAACCAGAATGTCCAGGGCAAGATCGAGAAATATGAGACC
CGTATCAAATTCCTGGATGACGAGCTTAAGAAGACGGAGGATGACCTGCA
AGCCGCCGAAGAGGAGCGGGCTGGGCTTCAGGCCAGTGTTGACCAACAAG
GCCTGACAATCCAGGATATTGACCGTATGAACACGGAACGTGAACGCCTG
CAGAGGAATCTTGACGATACGGTCAATCGGTTGGAAGAAACGCACGCGCG
GGTCATGGCAAAGGAGGCCGAGGCTAGTAGAAAACTCGAAGATTTAGAGG
AGATCGTCAAGGTCTACAACACGCTCGGATACCAGAATAGTTTGATTCCT
TCGTCAGCTGTCAATGCCAAGGGCGACGATTACGAACTCAGTCTCAACGT
CAACGAGAGCAATTTCTCCGCCTCTCAGGTCGGTGGTCTAGCGAACCGAA
TCTCTACCGATGGAGATCGACTATTGGCGGACCCGTTCACTGGCTATCAC
CCAGCACACTTGCTCAACCTCGATCTCCGCGGCATCGTGCGCAGCAATCT
ACAGGCTCTCCGGAAGGAGATCAACGAGCGCCGGAAGCGTGCCATTGATG
ATGACTTGGAACGACGCAATCTCTTGGACAACATCAAGGAAGCAATGGAC
GAGAAGCGAAGCGAGGTTGAGGCTTTGGAGCATAAGGCACGTGCCGCTGA
AGAGGAATTCGAGCGGCTCAAGGAGGTCACCACAACGCAGAAGCTTGCTT
CGGATGCACAGATTGAAAAGATGGAGAAGGAGCTGGCCAAGATGCGAGCC
ACGTTGGGCGAAAGCGTCCAACTGATGGAGCAGCGCGAGATGAATACTAA
CATTGAGTATGAACAATTGACTCTCCGCGCAAATGCGTTGCGTGAGGAGC
TACACACCAATGTGGAGAGCATGCTGAACGATGTCATCCGTTTCAAGGTC
CATATTCAAAAAGGTCTGGAAGACTACGAGAGCTTTGTTGTCGACGAGGT
CGAGCAGGAATTGGGTGGTGACATGCAGTTTGCAGATGAGGACATTGAAA
TGGGAGTTGAAGAGGAAGAGGAGGAGCTTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0031262 | Ndc80 complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0051315 | attachment of mitotic spindle microtubules to kinetochore |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007396-T1.utr5p1 | KJC3_007396-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007396-T1.utr3p1 | KJC3_007396-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG092619RJ |
| DBxref | InterPro:IPR038273 |
| DBxref | InterPro:IPR005550 |
| DBxref | PFAM:PF03801 |
| Product | kinetochore-associated Ndc80 complex subunit ndc80 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch5 | supercontig | ch5:2337544..2340502 + |
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