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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch5:2486032..2487548- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007445-T1 ID=KJC3_007445-T1|Name=KJC3_007445-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1517bp|location=Sequence derived from alignment at ch5:2486032..2487548- (Aspergillus niger KJC3)
CAGCTCTTATCAGGCTATCAGAGCCCCCGTCACTTCGGCGCAGTGCGCCT
ATCATCTTACTTGACATGCAATTCCGGGGCTGCGATAAGCCTGAAGGATG
AAGACTGTAGATATTTAGCGTGCCCCTCATACAACATTTATTCATACTTT
TGTCTCCGCCAACTCATCTTCCCCTCTTCTCCCCAGGACATCTTCTTTCA
GCAATTAAATCAAAGACCAGAGAAAATAAAGCTACACTACTAGTAGTAAC
CATGTCCGCTACCGTCACCGAAACCACCACTAACCCCGTCCCCGTCGTCG
TAGCGGCCGACAACAACACCACCAGCAAAACTCACATCGAAGATGCCGCC
AACGACAAGGACTTCCAGTCCGTCGCACGGGGAAACCGTGCCGGAACGCT
CAAGCTACGAGGTATTCCGACCTTTAGTGATCCTGCTGCTAAGCGGCAGT
GGATGAAGGAGCATATGGCTGCTGCATTCCGATTCTTTGGCAAGAAAGGA
TATGGGGAGGGTGTGTCGGGGCATATTTCTATGAGAGGTGAGTAAGCATT
TCTTCATAACACCATGTAATCGCTGGGCTTCGACTCAACAGTTATTGACG
GAATATGCTGCAGACCCTATTCTAAAGGACCACTTCTGGATGAACCCCTT
CGCCAAGCACTTCTCCACCATCAAGGCATCGGATCTCGTCCTTGTTGATG
CAGAGGGATATGTCACCGAGGGCGGTGCTCAGCTACCTATCAACGAGGCC
GGATTCATGATCCACTCGGAGATTCACAAGGCCCGGCCGGATGTTATTGC
TGCGGCGCATACGCATTCAATTTATGGGAAGACGTGGAGTGCGTTTGGAA
AGCCGATTGAGATGCTTACTCAGGGTTAGTAGAAATACCGGTTGCCTACT
AGGGATATGGACTGATTGTCTAATCTGGTATGTATAGATGCATGCAATCT
CTACGGAAAGGTCGGTGTCTATGAAGACCACGGCGGCATTGCCCTTGCGC
AGGAGGAGGGAGAGCAGATTGCCCGTGCCCTAGGCAAGGACAACATTGCT
TGCATTTTGCAGAACCATGGGTGAGTCCGATGCATAATATAATATCAAGT
ATATCATGTACTAACGGAAGAGAATAGTCTTCTCACCGTGGGCCGAACTG
TCGACGAGGCGGCCTTCCTCTACTTCTCCTTGGACAATGCCTGCCACACA
CAGTTGCTGGCTGAAGCTGCGGCCGCGAATGGTGTTCCGAAGAGAATCAT
CTCGAATGAGGTAGCGAAGTATACTGCTGATGTTGCGCAGAATCATGTGA
GTTACCCTTCTCAATTGTGATAAATGGGTGGATGGCTGACCGTATACAGC
ACAACTTCTATACCGAATTCCAGCCCGAGTACGAGTTGATCGTTGAAGAG
ACTAACGGAAGGGTCCTGCAATAAGGGACGAGTTATCTGCTAGCAAAAGT
GTCCATAGTTCGCATTCTTCTATATAATTCCTGTCTCTGCTGCTTTGAGT
ATGAAATATCCCTCGCG back to topCoding sequence (CDS) from alignment at ch5:2486032..2487548- >KJC3_007445-T1 ID=KJC3_007445-T1|Name=KJC3_007445-T1|organism=Aspergillus niger KJC3|type=CDS|length=4620bp|location=Sequence derived from alignment at ch5:2486032..2487548- (Aspergillus niger KJC3)
CACAACTTCTATACCGAATTCCAGCCCGAGTACGAGTTGATCGTTGAAGA
GACTAACGGAAGGGTCCTGCAATAATCTTCTCACCGTGGGCCGAACTGTC
GACGAGGCGGCCTTCCTCTACTTCTCCTTGGACAATGCCTGCCACACACA
GTTGCTGGCTGAAGCTGCGGCCGCGAATGGTGTTCCGAAGAGAATCATCT
CGAATGAGGTAGCGAAGTATACTGCTGATGTTGCGCAGAATCATATGCAT
GCAATCTCTACGGAAAGGTCGGTGTCTATGAAGACCACGGCGGCATTGCC
CTTGCGCAGGAGGAGGGAGAGCAGATTGCCCGTGCCCTAGGCAAGGACAA
CATTGCTTGCATTTTGCAGAACCATGGACCCTATTCTAAAGGACCACTTC
TGGATGAACCCCTTCGCCAAGCACTTCTCCACCATCAAGGCATCGGATCT
CGTCCTTGTTGATGCAGAGGGATATGTCACCGAGGGCGGTGCTCAGCTAC
CTATCAACGAGGCCGGATTCATGATCCACTCGGAGATTCACAAGGCCCGG
CCGGATGTTATTGCTGCGGCGCATACGCATTCAATTTATGGGAAGACGTG
GAGTGCGTTTGGAAAGCCGATTGAGATGCTTACTCAGGATGTCCGCTACC
GTCACCGAAACCACCACTAACCCCGTCCCCGTCGTCGTAGCGGCCGACAA
CAACACCACCAGCAAAACTCACATCGAAGATGCCGCCAACGACAAGGACT
TCCAGTCCGTCGCACGGGGAAACCGTGCCGGAACGCTCAAGCTACGAGGT
ATTCCGACCTTTAGTGATCCTGCTGCTAAGCGGCAGTGGATGAAGGAGCA
TATGGCTGCTGCATTCCGATTCTTTGGCAAGAAAGGATATGGGGAGGGTG
TGTCGGGGCATATTTCTATGAGAGCACAACTTCTATACCGAATTCCAGCC
CGAGTACGAGTTGATCGTTGAAGAGACTAACGGAAGGGTCCTGCAATAAT
CTTCTCACCGTGGGCCGAACTGTCGACGAGGCGGCCTTCCTCTACTTCTC
CTTGGACAATGCCTGCCACACACAGTTGCTGGCTGAAGCTGCGGCCGCGA
ATGGTGTTCCGAAGAGAATCATCTCGAATGAGGTAGCGAAGTATACTGCT
GATGTTGCGCAGAATCATATGCATGCAATCTCTACGGAAAGGTCGGTGTC
TATGAAGACCACGGCGGCATTGCCCTTGCGCAGGAGGAGGGAGAGCAGAT
TGCCCGTGCCCTAGGCAAGGACAACATTGCTTGCATTTTGCAGAACCATG
GACCCTATTCTAAAGGACCACTTCTGGATGAACCCCTTCGCCAAGCACTT
CTCCACCATCAAGGCATCGGATCTCGTCCTTGTTGATGCAGAGGGATATG
TCACCGAGGGCGGTGCTCAGCTACCTATCAACGAGGCCGGATTCATGATC
CACTCGGAGATTCACAAGGCCCGGCCGGATGTTATTGCTGCGGCGCATAC
GCATTCAATTTATGGGAAGACGTGGAGTGCGTTTGGAAAGCCGATTGAGA
TGCTTACTCAGGATGTCCGCTACCGTCACCGAAACCACCACTAACCCCGT
CCCCGTCGTCGTAGCGGCCGACAACAACACCACCAGCAAAACTCACATCG
AAGATGCCGCCAACGACAAGGACTTCCAGTCCGTCGCACGGGGAAACCGT
GCCGGAACGCTCAAGCTACGAGGTATTCCGACCTTTAGTGATCCTGCTGC
TAAGCGGCAGTGGATGAAGGAGCATATGGCTGCTGCATTCCGATTCTTTG
GCAAGAAAGGATATGGGGAGGGTGTGTCGGGGCATATTTCTATGAGAGCA
CAACTTCTATACCGAATTCCAGCCCGAGTACGAGTTGATCGTTGAAGAGA
CTAACGGAAGGGTCCTGCAATAATCTTCTCACCGTGGGCCGAACTGTCGA
CGAGGCGGCCTTCCTCTACTTCTCCTTGGACAATGCCTGCCACACACAGT
TGCTGGCTGAAGCTGCGGCCGCGAATGGTGTTCCGAAGAGAATCATCTCG
AATGAGGTAGCGAAGTATACTGCTGATGTTGCGCAGAATCATATGCATGC
AATCTCTACGGAAAGGTCGGTGTCTATGAAGACCACGGCGGCATTGCCCT
TGCGCAGGAGGAGGGAGAGCAGATTGCCCGTGCCCTAGGCAAGGACAACA
TTGCTTGCATTTTGCAGAACCATGGACCCTATTCTAAAGGACCACTTCTG
GATGAACCCCTTCGCCAAGCACTTCTCCACCATCAAGGCATCGGATCTCG
TCCTTGTTGATGCAGAGGGATATGTCACCGAGGGCGGTGCTCAGCTACCT
ATCAACGAGGCCGGATTCATGATCCACTCGGAGATTCACAAGGCCCGGCC
GGATGTTATTGCTGCGGCGCATACGCATTCAATTTATGGGAAGACGTGGA
GTGCGTTTGGAAAGCCGATTGAGATGCTTACTCAGGATGTCCGCTACCGT
CACCGAAACCACCACTAACCCCGTCCCCGTCGTCGTAGCGGCCGACAACA
ACACCACCAGCAAAACTCACATCGAAGATGCCGCCAACGACAAGGACTTC
CAGTCCGTCGCACGGGGAAACCGTGCCGGAACGCTCAAGCTACGAGGTAT
TCCGACCTTTAGTGATCCTGCTGCTAAGCGGCAGTGGATGAAGGAGCATA
TGGCTGCTGCATTCCGATTCTTTGGCAAGAAAGGATATGGGGAGGGTGTG
TCGGGGCATATTTCTATGAGAGCACAACTTCTATACCGAATTCCAGCCCG
AGTACGAGTTGATCGTTGAAGAGACTAACGGAAGGGTCCTGCAATAATCT
TCTCACCGTGGGCCGAACTGTCGACGAGGCGGCCTTCCTCTACTTCTCCT
TGGACAATGCCTGCCACACACAGTTGCTGGCTGAAGCTGCGGCCGCGAAT
GGTGTTCCGAAGAGAATCATCTCGAATGAGGTAGCGAAGTATACTGCTGA
TGTTGCGCAGAATCATATGCATGCAATCTCTACGGAAAGGTCGGTGTCTA
TGAAGACCACGGCGGCATTGCCCTTGCGCAGGAGGAGGGAGAGCAGATTG
CCCGTGCCCTAGGCAAGGACAACATTGCTTGCATTTTGCAGAACCATGGA
CCCTATTCTAAAGGACCACTTCTGGATGAACCCCTTCGCCAAGCACTTCT
CCACCATCAAGGCATCGGATCTCGTCCTTGTTGATGCAGAGGGATATGTC
ACCGAGGGCGGTGCTCAGCTACCTATCAACGAGGCCGGATTCATGATCCA
CTCGGAGATTCACAAGGCCCGGCCGGATGTTATTGCTGCGGCGCATACGC
ATTCAATTTATGGGAAGACGTGGAGTGCGTTTGGAAAGCCGATTGAGATG
CTTACTCAGGATGTCCGCTACCGTCACCGAAACCACCACTAACCCCGTCC
CCGTCGTCGTAGCGGCCGACAACAACACCACCAGCAAAACTCACATCGAA
GATGCCGCCAACGACAAGGACTTCCAGTCCGTCGCACGGGGAAACCGTGC
CGGAACGCTCAAGCTACGAGGTATTCCGACCTTTAGTGATCCTGCTGCTA
AGCGGCAGTGGATGAAGGAGCATATGGCTGCTGCATTCCGATTCTTTGGC
AAGAAAGGATATGGGGAGGGTGTGTCGGGGCATATTTCTATGAGAGCACA
ACTTCTATACCGAATTCCAGCCCGAGTACGAGTTGATCGTTGAAGAGACT
AACGGAAGGGTCCTGCAATAATCTTCTCACCGTGGGCCGAACTGTCGACG
AGGCGGCCTTCCTCTACTTCTCCTTGGACAATGCCTGCCACACACAGTTG
CTGGCTGAAGCTGCGGCCGCGAATGGTGTTCCGAAGAGAATCATCTCGAA
TGAGGTAGCGAAGTATACTGCTGATGTTGCGCAGAATCATATGCATGCAA
TCTCTACGGAAAGGTCGGTGTCTATGAAGACCACGGCGGCATTGCCCTTG
CGCAGGAGGAGGGAGAGCAGATTGCCCGTGCCCTAGGCAAGGACAACATT
GCTTGCATTTTGCAGAACCATGGACCCTATTCTAAAGGACCACTTCTGGA
TGAACCCCTTCGCCAAGCACTTCTCCACCATCAAGGCATCGGATCTCGTC
CTTGTTGATGCAGAGGGATATGTCACCGAGGGCGGTGCTCAGCTACCTAT
CAACGAGGCCGGATTCATGATCCACTCGGAGATTCACAAGGCCCGGCCGG
ATGTTATTGCTGCGGCGCATACGCATTCAATTTATGGGAAGACGTGGAGT
GCGTTTGGAAAGCCGATTGAGATGCTTACTCAGGATGTCCGCTACCGTCA
CCGAAACCACCACTAACCCCGTCCCCGTCGTCGTAGCGGCCGACAACAAC
ACCACCAGCAAAACTCACATCGAAGATGCCGCCAACGACAAGGACTTCCA
GTCCGTCGCACGGGGAAACCGTGCCGGAACGCTCAAGCTACGAGGTATTC
CGACCTTTAGTGATCCTGCTGCTAAGCGGCAGTGGATGAAGGAGCATATG
GCTGCTGCATTCCGATTCTTTGGCAAGAAAGGATATGGGGAGGGTGTGTC
GGGGCATATTTCTATGAGAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007445-T1.utr3p1 | KJC3_007445-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007445-T1.utr5p1 | KJC3_007445-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036409 |
| DBxref | InterPro:IPR001303 |
| DBxref | PFAM:PF00596 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| ch5 | supercontig | ch5:2486032..2487548 - |
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