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KJC3_007450-T1, KJC3_007450-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_007450-T1
Unique NameKJC3_007450-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch5:2496042..2497917-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_007450-T1 ID=KJC3_007450-T1|Name=KJC3_007450-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1876bp|location=Sequence derived from alignment at ch5:2496042..2497917- (Aspergillus niger KJC3)
CTGGCTGGATTTCTGGGTTGCAAAGGAACTGCTGTAGTCGCTGCTTGCTG
AACCCTTCCAGAGCAATCATGTCAGCCGCTACCGATAAGGCACGCTTCTT
TCTGGAGAAGTCGGTCCCTGAGCTCAAGGAGTTTGAGCGGAAGAAAATCT
TCTCCAAGGTAAATTGGTGCCCATGATCATTATCTACCCACATCGATGCG
CTTAGGAAACTGACATGCCGTTTGATCTGCCTGCAGGAGGAAATTACAGC
CATCATCAAGAAACGGTCCGATTTTGAGCACAAGCTGAATGCACGTGGCG
CCCTGCCTGTTGACTTCGTCCGATATGCGCAATACGAGATGAACCTAGAC
ACCCTGCGCCGGAAGAGGGTGAAGCGGTTGGGAATCAGATCGGCAGGATA
CACTGGGCAAAGGCGCATCTTCTTCATCCTTGACCGCGCAACTCGCAAGT
TTCATGGTGATGTGGGCTTGTGGGTGCAGTACCTCGAATACGCGAAACAA
CAGAAAGCCTACAAAAAGGTCTCGACCATCCTTACGGACGCCTTGCGGTT
ACATCCCGCCAACGTCGACTTGTGGCTATATGCTGCGCAGTACTCTGTGG
ATGAGCATGCGGATATGACACAATCTAGGGGTTACATGCAGCGCGGTTTG
CGCTTCTGCAAAAGCTCCAAGAAGCTGTGGCTCCACTATGCCAAACTGGA
ATTGATATATATCGCCAAGCTGGTTGCTCGACAGCGGATCTTGGGTCTCG
ATAAGCCGATCGAAGCCCCGAAGCCAGCGCAGGAGGACGATTTAGATGCC
GACATGATTGCTATGCCCAAGATCACTGGAGAAGATATCAACCCCGGCGC
TGGAGAGGATGGCGGTGTGGATCAAGTGGCTTTGGACAACCTTGCCAACA
CCCCAGCCCTGAGTGGTGCTATCCCTCTCGCCATCTTCGATACGGCCATG
AAGAACTTCGAAAATGACGACCGTTTCGGTCATGAGTTCTACGATATGGC
GGTCGAGTTCGACGACCTGCCCTGTCTGCACAAAATTCTCGGCCATGTGG
TCGACGTGATGCAGCAGACCAAGCCAAACAGTCCTCATACGCAAATTTGC
TACATCAAATTCCCCACCGCTGGACTCCGGGTTACTTCACCCGAATTCCC
ACGTGCGTTTAGTGCGTCATTTGCCCGTCTCAAGGAGTACCGGAATAACC
CCAACGTCGCCAAGGAGATCGTCAGCTGGCTACAGCCCCTTGAGAAGACA
GAAGGCGTGGATGCCTCCCTCCAAAAGGCGATTTCGGCCACTATCCGTAA
TGCGGAACGCACTGTACAGGAAGCATAGAGCTTACATTTTTTACTAAATC
ATTCATCGGCGTTTATCGGGCTTTTTCCGTCGCAAGCTTAATGGGCAATG
AGAATGAGGGAAAGGTCCTCTTGGTTATTAGGTGATGAAAAGTTAGCATG
TTTGTTAGTCGTCATAACTACCCCGTCGGCTGCTCTTTTTGCTGCTGTGC
AATTTCTTCGACTTGATGCGGGCTTCGTTTGCAGCTTTCTTTCTGCGCTA
GATCAGTCCGAGGTTCGCATGTTCCTCAAAGTGGATCCTAAATACCCCGA
GGAGGAAATACATACAATTTTTGTACCTTGTCACGTTGTTCTTGCGAGGT
CTCTCCGGGGATCGTGTCCTCTGCTATGCTCTTGAGGACCTGGTGGAGCT
TATCGTAGCAAGCCTCCACGTTGGCGGTCTGTCTGCGCGACTCATCCGAT
TGAATGACCAGAATCTGGGATTTCGCGGCGACGTATCGAGACGCTTGCAG
CGGGGCATGTAGAAGTTGGGGGACGAAAGGCAGTAAAGATTTGAGGGGGA
CTCGTAATGTGGCTTTCGAGTTCACC
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Coding sequence (CDS) from alignment at ch5:2496042..2497917-

>KJC3_007450-T1 ID=KJC3_007450-T1|Name=KJC3_007450-T1|organism=Aspergillus niger KJC3|type=CDS|length=2364bp|location=Sequence derived from alignment at ch5:2496042..2497917- (Aspergillus niger KJC3)
GAGGAAATTACAGCCATCATCAAGAAACGGTCCGATTTTGAGCACAAGCT
GAATGCACGTGGCGCCCTGCCTGTTGACTTCGTCCGATATGCGCAATACG
AGATGAACCTAGACACCCTGCGCCGGAAGAGGGTGAAGCGGTTGGGAATC
AGATCGGCAGGATACACTGGGCAAAGGCGCATCTTCTTCATCCTTGACCG
CGCAACTCGCAAGTTTCATGGTGATGTGGGCTTGTGGGTGCAGTACCTCG
AATACGCGAAACAACAGAAAGCCTACAAAAAGGTCTCGACCATCCTTACG
GACGCCTTGCGGTTACATCCCGCCAACGTCGACTTGTGGCTATATGCTGC
GCAGTACTCTGTGGATGAGCATGCGGATATGACACAATCTAGGGGTTACA
TGCAGCGCGGTTTGCGCTTCTGCAAAAGCTCCAAGAAGCTGTGGCTCCAC
TATGCCAAACTGGAATTGATATATATCGCCAAGCTGGTTGCTCGACAGCG
GATCTTGGGTCTCGATAAGCCGATCGAAGCCCCGAAGCCAGCGCAGGAGG
ACGATTTAGATGCCGACATGATTGCTATGCCCAAGATCACTGGAGAAGAT
ATCAACCCCGGCGCTGGAGAGGATGGCGGTGTGGATCAAGTGGCTTTGGA
CAACCTTGCCAACACCCCAGCCCTGAGTGGTGCTATCCCTCTCGCCATCT
TCGATACGGCCATGAAGAACTTCGAAAATGACGACCGTTTCGGTCATGAG
TTCTACGATATGGCGGTCGAGTTCGACGACCTGCCCTGTCTGCACAAAAT
TCTCGGCCATGTGGTCGACGTGATGCAGCAGACCAAGCCAAACAGTCCTC
ATACGCAAATTTGCTACATCAAATTCCCCACCGCTGGACTCCGGGTTACT
TCACCCGAATTCCCACGTGCGTTTAGTGCGTCATTTGCCCGTCTCAAGGA
GTACCGGAATAACCCCAACGTCGCCAAGGAGATCGTCAGCTGGCTACAGC
CCCTTGAGAAGACAGAAGGCGTGGATGCCTCCCTCCAAAAGGCGATTTCG
GCCACTATCCGTAATGCGGAACGCACTGTACAGGAAGCATAGATGTCAGC
CGCTACCGATAAGGCACGCTTCTTTCTGGAGAAGTCGGTCCCTGAGCTCA
AGGAGTTTGAGCGGAAGAAAATCTTCTCCAAGGAGGAAATTACAGCCATC
ATCAAGAAACGGTCCGATTTTGAGCACAAGCTGAATGCACGTGGCGCCCT
GCCTGTTGACTTCGTCCGATATGCGCAATACGAGATGAACCTAGACACCC
TGCGCCGGAAGAGGGTGAAGCGGTTGGGAATCAGATCGGCAGGATACACT
GGGCAAAGGCGCATCTTCTTCATCCTTGACCGCGCAACTCGCAAGTTTCA
TGGTGATGTGGGCTTGTGGGTGCAGTACCTCGAATACGCGAAACAACAGA
AAGCCTACAAAAAGGTCTCGACCATCCTTACGGACGCCTTGCGGTTACAT
CCCGCCAACGTCGACTTGTGGCTATATGCTGCGCAGTACTCTGTGGATGA
GCATGCGGATATGACACAATCTAGGGGTTACATGCAGCGCGGTTTGCGCT
TCTGCAAAAGCTCCAAGAAGCTGTGGCTCCACTATGCCAAACTGGAATTG
ATATATATCGCCAAGCTGGTTGCTCGACAGCGGATCTTGGGTCTCGATAA
GCCGATCGAAGCCCCGAAGCCAGCGCAGGAGGACGATTTAGATGCCGACA
TGATTGCTATGCCCAAGATCACTGGAGAAGATATCAACCCCGGCGCTGGA
GAGGATGGCGGTGTGGATCAAGTGGCTTTGGACAACCTTGCCAACACCCC
AGCCCTGAGTGGTGCTATCCCTCTCGCCATCTTCGATACGGCCATGAAGA
ACTTCGAAAATGACGACCGTTTCGGTCATGAGTTCTACGATATGGCGGTC
GAGTTCGACGACCTGCCCTGTCTGCACAAAATTCTCGGCCATGTGGTCGA
CGTGATGCAGCAGACCAAGCCAAACAGTCCTCATACGCAAATTTGCTACA
TCAAATTCCCCACCGCTGGACTCCGGGTTACTTCACCCGAATTCCCACGT
GCGTTTAGTGCGTCATTTGCCCGTCTCAAGGAGTACCGGAATAACCCCAA
CGTCGCCAAGGAGATCGTCAGCTGGCTACAGCCCCTTGAGAAGACAGAAG
GCGTGGATGCCTCCCTCCAAAAGGCGATTTCGGCCACTATCCGTAATGCG
GAACGCACTGTACAGGAAGCATAGATGTCAGCCGCTACCGATAAGGCACG
CTTCTTTCTGGAGAAGTCGGTCCCTGAGCTCAAGGAGTTTGAGCGGAAGA
AAATCTTCTCCAAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0030515snoRNA binding
Vocabulary: Biological Process
TermDefinition
GO:0000462maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006396RNA processing
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_007450KJC3_007450Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007450-T1KJC3_007450-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007450-T1.cdsKJC3_007450-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007450-T1.utr3p1KJC3_007450-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007450-T1.exon2KJC3_007450-T1.exon2Aspergillus niger KJC3exon
KJC3_007450-T1.exon1KJC3_007450-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007450-T1.utr5p1KJC3_007450-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR011990
DBxrefInterPro:IPR013949
DBxrefInterPro:IPR003107
DBxrefPFAM:PF08640
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch5supercontigch5:2496042..2497917 -
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