You are here

Home

KJC3_007581-T1, KJC3_007581-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_007581-T1
Unique NameKJC3_007581-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch5:2847429..2848966+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_007581-T1 ID=KJC3_007581-T1|Name=KJC3_007581-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1538bp|location=Sequence derived from alignment at ch5:2847429..2848966+ (Aspergillus niger KJC3)
ATGCCTGGTGGAAAGGGAAAGTCTATCGGTGGAAAGGCCGGCTCCAAGGA
CTCTGCGGGGAAGAGCCAGAAGTCCCACAGCGCAAAGGCTGGTCTGCAGG
TCCGTATTAGTCGTTCTTTTTTTCTCCTCCTGGCAGGCATATGACGCTTG
ACCCATCTCATGGGTTCTGGCGGCGACATGCCGCTGAAGCCGTTACGGCC
TGGGATTTTGCTTTTTGCCTCCTTTGCCCCTCGCGATCGCCTCTATGTTG
CCAAAAGCACGCGTATAGCTCTTTTATATTGAATAATACCCCTTTAAGAG
CTATACCGCACCGGCTAGTCACAGTTCAGGCGACAGGGTTGCGAGGGGTG
GCGGTCATGATCCCTCCCGTATTTACCTTCAAAGCTTCACTTCACACATT
CATGCCTATCTATTATCATCAGTTTCATTCGCTAACATTATCCTTCGATC
ACAGTTCCCTTGCGGTCGTGTTAAGCGCTTTTTGAAGAACAACACCCAGA
ACAAGATGCGCGTTGGCGCCAAAGGTACGACCCTTTCCATTAAGCCTACA
GAAGGCGCACCTTCCTTTGTCTCCTCTTTCAACCATGCTGACAAATCCCG
ATCGCAGCCGCCGTGTATGTCACCGCTGTTCTCGAATATCTGACCGCAGA
AGTTCTCGAATTGGCCGGAAACGCTGCCAAGGATCTCAAAGTCAAGCGTA
TCACCCCGCGTCATCTGCAGCTCGCCATCCGTGGAGATGAGGAGCTGGAT
ACCCTGATCCGCGCCACTATTGCCTTCGGAGGTGTTCTGCCGCGCATCAA
CCGCGCGCTCTTGCTGAAGGTGGAGCAAAAGAAGAAGAACAAGACTGAGG
CTTAAATGATGGTGGATACCCGACGAACTCCGGCGTTTGGTGATTGAATG
ATCGTTAAAGGGAAAAAGCTAGGAACGGGTTCTTTACTGTGATCATGATG
CTACCTCCACCCCTCTGCAAAACCACACCCGAACAGGGAGGCAAGGTCAT
GTCCTTCTGACGAACAAAAAAAGCCCACCTTCTATTCTCGTGACGCTGCG
AAGCTCGAGATGATTTTTTCCAAGTTCTTCCTTGCTTCCCCCCATCTTTT
ATTTTATCATTATTATTTATCTCCCCTGACAGCTTGATGTCTTTTGTGTA
TTCCGTGTTTCATGTCAAATTTTCCAAGGGCGCTGTAATGGGAAAAAAGG
GGATATGTTTCGGTAGTGGGAAAGTTATTATTATTTCCATGATTTTTTTT
TCTTTCATTTTACCCCTTTTGTTTCTGTACTCTTGTGTCTTCTCTTAATA
TTAACGGGTCTGTACGAGTCTACCTTTTTCTTCACCTCCTTTCCTCTTAT
CTTCTTTCTATTGTGACCTGTTCATCCATGCCCTGGTGATATATTAAGTG
AATGGGTGAGTGGATGGGGTTTATAGGAGTCGTACTACATGAGTATGGTG
TGAGTAGATCTTACTACCTTCAGTAACATTACTTGAACCCGCTTGTATGG
AAATAAACATTAGTATTATCGTACGTATATGTTCGAAG
back to top

Coding sequence (CDS) from alignment at ch5:2847429..2848966+

>KJC3_007581-T1 ID=KJC3_007581-T1|Name=KJC3_007581-T1|organism=Aspergillus niger KJC3|type=CDS|length=1251bp|location=Sequence derived from alignment at ch5:2847429..2848966+ (Aspergillus niger KJC3)
ATGCCTGGTGGAAAGGGAAAGTCTATCGGTGGAAAGGCCGGCTCCAAGGA
CTCTGCGGGGAAGAGCCAGAAGTCCCACAGCGCAAAGGCTGGTCTGCAGT
TCCCTTGCGGTCGTGTTAAGCGCTTTTTGAAGAACAACACCCAGAACAAG
ATGCGCGTTGGCGCCAAAGCCGCCGTGTATGTCACCGCTGTTCTCGAATA
TCTGACCGCAGAAGTTCTCGAATTGGCCGGAAACGCTGCCAAGGATCTCA
AAGTCAAGCGTATCACCCCGCGTCATCTGCAGCTCGCCATCCGTGGAGAT
GAGGAGCTGGATACCCTGATCCGCGCCACTATTGCCTTCGGAGGTGTTCT
GCCGCGCATCAACCGCGCGCTCTTGCTGAAGGTGGAGCAAAAGAAGAAGA
ACAAGACTGAGGCTTAAATGCCTGGTGGAAAGGGAAAGTCTATCGGTGGA
AAGGCCGGCTCCAAGGACTCTGCGGGGAAGAGCCAGAAGTCCCACAGCGC
AAAGGCTGGTCTGCAGTTCCCTTGCGGTCGTGTTAAGCGCTTTTTGAAGA
ACAACACCCAGAACAAGATGCGCGTTGGCGCCAAAGCCGCCGTGTATGTC
ACCGCTGTTCTCGAATATCTGACCGCAGAAGTTCTCGAATTGGCCGGAAA
CGCTGCCAAGGATCTCAAAGTCAAGCGTATCACCCCGCGTCATCTGCAGC
TCGCCATCCGTGGAGATGAGGAGCTGGATACCCTGATCCGCGCCACTATT
GCCTTCGGAGGTGTTCTGCCGCGCATCAACCGCGCGCTCTTGCTGAAGGT
GGAGCAAAAGAAGAAGAACAAGACTGAGGCTTAAATGCCTGGTGGAAAGG
GAAAGTCTATCGGTGGAAAGGCCGGCTCCAAGGACTCTGCGGGGAAGAGC
CAGAAGTCCCACAGCGCAAAGGCTGGTCTGCAGTTCCCTTGCGGTCGTGT
TAAGCGCTTTTTGAAGAACAACACCCAGAACAAGATGCGCGTTGGCGCCA
AAGCCGCCGTGTATGTCACCGCTGTTCTCGAATATCTGACCGCAGAAGTT
CTCGAATTGGCCGGAAACGCTGCCAAGGATCTCAAAGTCAAGCGTATCAC
CCCGCGTCATCTGCAGCTCGCCATCCGTGGAGATGAGGAGCTGGATACCC
TGATCCGCGCCACTATTGCCTTCGGAGGTGTTCTGCCGCGCATCAACCGC
GCGCTCTTGCTGAAGGTGGAGCAAAAGAAGAAGAACAAGACTGAGGCTTA
A
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
HTZ1KJC3_007581Aspergillus niger KJC3gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007581-T1.exon1KJC3_007581-T1.exon1Aspergillus niger KJC3exon
KJC3_007581-T1.exon2KJC3_007581-T1.exon2Aspergillus niger KJC3exon
KJC3_007581-T1.exon3KJC3_007581-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007581-T1.cdsKJC3_007581-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007581-T1.utr3p1KJC3_007581-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_007581-T1KJC3_007581-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR007125
DBxrefInterPro:IPR032454
DBxrefInterPro:IPR009072
DBxrefInterPro:IPR002119
DBxrefPFAM:PF16211
DBxrefPFAM:PF00125
DBxrefPFAM:PF00808
Producthistone H2A.Z
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch5supercontigch5:2847429..2848966 +
Powered by Drupal