|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:280576..282125+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007853-T1 ID=KJC3_007853-T1|Name=KJC3_007853-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1550bp|location=Sequence derived from alignment at ch6:280576..282125+ (Aspergillus niger KJC3)
CAGTCAGCTCCATTTTCATATTAATATCCTGCTTATTCTCCCGCCTGTCA
ACAATCACACATAAAATACACCGTTTCCCCTAAAGAAACACTCTTCCTCA
TTATACCCTCCTATCCCCACCGACCCTCCCAACACCCTCACAATGTCACA
ACCACCCACCAACACAAACAGCCACAAGATGTGGGACAAAACCAAAACCT
ACGGCAAAATGGGCTTCGACAAAGCCTGGGGCGCCCTCGACAAGCTAGGT
GCCCCCGTCAACCGACTCAGCAATAAGTTGGGCTCCGAGGCCTTTTGGCC
CATGACCCTCGACAAAGAAAGCGAAAAGGTCGCCCGGATTCTCCGCAGTT
TCTGCAAAGATGGCGTGTACGTGGACGAACCAGCCGCGGACACTGCGCCT
CCTGTCAACAGCAACGAAGCATCATCATCGAAACAGAAGATTGACAAGCC
CCGCGGGAAACAAAAGGTGCTGAAGAAGATCCCCTCGGAAGTGATCCGGC
AGGCCAAGGGAATCGTCGTGTTCACGGCCATGAGAACGGGCTTGTGGTTC
AGTGGAGCCGGTGGAAGTGGCATTCTGATCGCCCGGGTGCCGGAGACCGG
GGAGTGGAGTGCCCCGTCGGGGATCTTGTTGCATACGGCTGGATTGGGCT
TCCTTGTTGGTGCGGATATCTACGACTGTGTGATGGTCATCAATACCTAC
GAGGCGCTGGAAGCATTCACCAAGGTTAGAGTGACGCTGGGCAGCGAGAT
CACTGTTGCTGCGGGCCCCATTGGCATGGGCGGGGTGTTGGAGTCGGAGG
TACATAAGCGCCGGGCGCCGATTTGGTGCTATGTCAAGAGTAGGGGTTTC
TACGCGGGGGTGCAAATTGATGGAACGATTGTTATTGAGCGCAACGATGA
GAACGAGAGGTTCTATGGTCGGAAAATTCCAGTCAAGGAGATCCTGAGTG
GCCACGTGCGCACGGATAACCCGTCCGTGCGAATGTTGACGCACACGCTT
CGTTCCGCGCAGGGAGATGCCAACTTTGACCAGGCTCCTGCTGGAGTGCA
AGCGCCCATGGGACCGAGTCCTAGTGATTATGCACCTGAATATCTTCAAC
ATACTACTATGGTTAACACTGGGGCGGCCCCAGGCGAGGGGGCACCATAT
CAGTCCGGTCAATATCCTCCTGGGCCCCAAGCTGGTCCTAGTCCTGGTCC
TGGTCCGCAATATCAAGCCGGTTCCCAGTATCAACAAGGACCCCAGTACC
AGCAAGGACCCCAGCATCAGCAAGGACCCCAGTATCAGGGTGATCCGCAG
TATCAACATGGTGCCCCGTATCAGCCAGGTCCTCAATATCAACAACCGGG
TGCGCCATACCAACCTGGTCCCCAGTATCACCCGGGTCATCAGTAGCCTT
TGAACCGAAATCGATGAGCTGCGCCCGCAACATATCTTTATACCTGCTTC
TTCCAGCGAGACAGATTCCCTATTGTTAGAACACTCAAGATAACGAATCA
CGATTGATAACAACTTTCCTAATCATAGAATTCTATATATGCCTTTCTGC
back to topCoding sequence (CDS) from alignment at ch6:280576..282125+ >KJC3_007853-T1 ID=KJC3_007853-T1|Name=KJC3_007853-T1|organism=Aspergillus niger KJC3|type=CDS|length=1254bp|location=Sequence derived from alignment at ch6:280576..282125+ (Aspergillus niger KJC3)
ATGTCACAACCACCCACCAACACAAACAGCCACAAGATGTGGGACAAAAC
CAAAACCTACGGCAAAATGGGCTTCGACAAAGCCTGGGGCGCCCTCGACA
AGCTAGGTGCCCCCGTCAACCGACTCAGCAATAAGTTGGGCTCCGAGGCC
TTTTGGCCCATGACCCTCGACAAAGAAAGCGAAAAGGTCGCCCGGATTCT
CCGCAGTTTCTGCAAAGATGGCGTGTACGTGGACGAACCAGCCGCGGACA
CTGCGCCTCCTGTCAACAGCAACGAAGCATCATCATCGAAACAGAAGATT
GACAAGCCCCGCGGGAAACAAAAGGTGCTGAAGAAGATCCCCTCGGAAGT
GATCCGGCAGGCCAAGGGAATCGTCGTGTTCACGGCCATGAGAACGGGCT
TGTGGTTCAGTGGAGCCGGTGGAAGTGGCATTCTGATCGCCCGGGTGCCG
GAGACCGGGGAGTGGAGTGCCCCGTCGGGGATCTTGTTGCATACGGCTGG
ATTGGGCTTCCTTGTTGGTGCGGATATCTACGACTGTGTGATGGTCATCA
ATACCTACGAGGCGCTGGAAGCATTCACCAAGGTTAGAGTGACGCTGGGC
AGCGAGATCACTGTTGCTGCGGGCCCCATTGGCATGGGCGGGGTGTTGGA
GTCGGAGGTACATAAGCGCCGGGCGCCGATTTGGTGCTATGTCAAGAGTA
GGGGTTTCTACGCGGGGGTGCAAATTGATGGAACGATTGTTATTGAGCGC
AACGATGAGAACGAGAGGTTCTATGGTCGGAAAATTCCAGTCAAGGAGAT
CCTGAGTGGCCACGTGCGCACGGATAACCCGTCCGTGCGAATGTTGACGC
ACACGCTTCGTTCCGCGCAGGGAGATGCCAACTTTGACCAGGCTCCTGCT
GGAGTGCAAGCGCCCATGGGACCGAGTCCTAGTGATTATGCACCTGAATA
TCTTCAACATACTACTATGGTTAACACTGGGGCGGCCCCAGGCGAGGGGG
CACCATATCAGTCCGGTCAATATCCTCCTGGGCCCCAAGCTGGTCCTAGT
CCTGGTCCTGGTCCGCAATATCAAGCCGGTTCCCAGTATCAACAAGGACC
CCAGTACCAGCAAGGACCCCAGCATCAGCAAGGACCCCAGTATCAGGGTG
ATCCGCAGTATCAACATGGTGCCCCGTATCAGCCAGGTCCTCAATATCAA
CAACCGGGTGCGCCATACCAACCTGGTCCCCAGTATCACCCGGGTCATCA
GTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007853-T1.utr5p1 | KJC3_007853-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007853-T1.utr3p1 | KJC3_007853-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR007461 |
| DBxref | PFAM:PF04366 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:280576..282125 + |
|
