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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:606979..608712- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_007987-T1 ID=KJC3_007987-T1|Name=KJC3_007987-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1734bp|location=Sequence derived from alignment at ch6:606979..608712- (Aspergillus niger KJC3)
GACCCCATCAAAACCCGCAAACGTCCCAGGGTCACACTCTCTCCTTCGTT
TAGCCCCAGACCCTGATTTTTTGGTCCAGACTTTCCCGGGGTTGCAGTGG
TTGCCAGTGCCATGGAAATAGGCCTGTACCTAGCAGAAGGAAAGTAGCGC
TATCTACTACTACTACTAGTACTAGATATATCCTGGTTTAGCCGTGAGAT
GGTTCTTTTGACGGAGTGAAATGCCCCCAATGGCCACCACGAGCTTTTTT
TGGAGACCCTGTTTACTCGTATTACTTTGTGTCAACTAGAAGGCCCGTGA
GAGTCCCTCACAATGACGATTCTGGATCTTCCGGCCAAGGAGGCTTCAGT
ATGGCCTGTTACCCTGGGCATTCTGTATGTAGTCACCAGTCAGCCAGAAT
AACCAGCGTTAACCATTGGATGTAGATCGTGGGTGTTTTGGTCGAATCTG
ACCATTTTATTCAATAAATGGGTTATTGAATCTACTGAATTCCGTACGTG
AATCTCTCTACTTCACTGTACTCATTATGGGCATGAACTTCCTACTAACG
TATCCCAGGGTACCGTGAGTCTCTCTCTATTAGGTGAACGATTCCATCAA
TACAGTCTAATCACCGACACATCTCCGCAGCAATCATCCTAACAACATGG
CATCTCGTCTTCGCAACCCTAGCCACTCAACTTCTTGCCCGAACCACCAC
CATGCTCGACGGTCGCAAGAAAATCCGCATGGACGGCCGAACCTACGTCC
GCATGATCATTCCCATCGGCATTCTCTACAGCGGTAGTCTCGTCTGCAGC
AACATCGTCTACCTCTACTTGAATGTTTCCTTTATCCAGATGCTCAAAGT
AAGCCCACCCCCACCATTCACTATTCTTCAACCCCCAATATACAATTCAA
ATACTAAGGAAAGCAAAACAGGCATGCGGCCCAATAGTGACCCTCCTCAC
CAGCTGGGCCTGGCACGTCAAAACCCCCTCGCTCGAATCCTTCCTCAACA
TCCTCCTCATCGCCTTCAGTGTCGCCCTCGCTGTCGCCGGCGAAGTCCAA
TTCTCCTGGCTCGGCGTCACCTACCAACTCGCCAGTCTTGTCTTCGACGC
CAACCGTCTTGTCATGATCCAGATCCTGCTGTCAGACGAGGGCCAGAAAA
TGGACCCCCTTGTGACTTTGTACTATTCTGCACCGGTGTGCGCCTTCACC
AACTTCATGATTGCGTTTTATACTGAGCTGCGCGGGTTCAGTTGGAGTGT
GATTGGGGAGACTGGGGTCGGGGTTTTGGTTGCGAACGCTACGGTGGGGT
TCATGTTGAATGTGTCGATTTTTGTTTTGGTATGTATATTTCCTTCCTTT
CTGGTTGGTGGTCAGGTGGTGAATGTGCGTGGATGCTAATGAGTATGAAT
ATGTATAGATCGGAAAGACATCCGGTTTGACCATGACACTGGTTAGTGTG
CCGAAGAACATCCTGTTGATTGTCTGTTCTGTGGTGATCTGGGGCACGCA
GATCACTCCGCTTCAGATGGTGGGGTATGCTATTGCGCTGTTGGGGTTGT
TGTATTATTCTCTGGGGTGGGCGACTATTAGGGGGGCATATGATGCTGGG
TATGTCAGGTTGGTTGGAAGGCAAGCGGAGAGGATGAAGGAGGAGGAGGA
TGTATAGAGAGGATTGTGTGCAGTTGTTTGATGACTTTTATCTTGGTGTT
GTTGTGTGAGGGTTTTAGATCGGTGCCTAGTGAG back to topCoding sequence (CDS) from alignment at ch6:606979..608712- >KJC3_007987-T1 ID=KJC3_007987-T1|Name=KJC3_007987-T1|organism=Aspergillus niger KJC3|type=CDS|length=6066bp|location=Sequence derived from alignment at ch6:606979..608712- (Aspergillus niger KJC3)
ATCGGAAAGACATCCGGTTTGACCATGACACTGGTTAGTGTGCCGAAGAA
CATCCTGTTGATTGTCTGTTCTGTGGTGATCTGGGGCACGCAGATCACTC
CGCTTCAGATGGTGGGGTATGCTATTGCGCTGTTGGGGTTGTTGTATTAT
TCTCTGGGGTGGGCGACTATTAGGGGGGCATATGATGCTGGGTATGTCAG
GTTGGTTGGAAGGCAAGCGGAGAGGATGAAGGAGGAGGAGGATGTATAGG
CATGCGGCCCAATAGTGACCCTCCTCACCAGCTGGGCCTGGCACGTCAAA
ACCCCCTCGCTCGAATCCTTCCTCAACATCCTCCTCATCGCCTTCAGTGT
CGCCCTCGCTGTCGCCGGCGAAGTCCAATTCTCCTGGCTCGGCGTCACCT
ACCAACTCGCCAGTCTTGTCTTCGACGCCAACCGTCTTGTCATGATCCAG
ATCCTGCTGTCAGACGAGGGCCAGAAAATGGACCCCCTTGTGACTTTGTA
CTATTCTGCACCGGTGTGCGCCTTCACCAACTTCATGATTGCGTTTTATA
CTGAGCTGCGCGGGTTCAGTTGGAGTGTGATTGGGGAGACTGGGGTCGGG
GTTTTGGTTGCGAACGCTACGGTGGGGTTCATGTTGAATGTGTCGATTTT
TGTTTTGCAATCATCCTAACAACATGGCATCTCGTCTTCGCAACCCTAGC
CACTCAACTTCTTGCCCGAACCACCACCATGCTCGACGGTCGCAAGAAAA
TCCGCATGGACGGCCGAACCTACGTCCGCATGATCATTCCCATCGGCATT
CTCTACAGCGGTAGTCTCGTCTGCAGCAACATCGTCTACCTCTACTTGAA
TGTTTCCTTTATCCAGATGCTCAAAGGTACCATCGTGGGTGTTTTGGTCG
AATCTGACCATTTTATTCAATAAATGGGTTATTGAATCTACTGAATTCCA
TGACGATTCTGGATCTTCCGGCCAAGGAGGCTTCAGTATGGCCTGTTACC
CTGGGCATTCTATCGGAAAGACATCCGGTTTGACCATGACACTGGTTAGT
GTGCCGAAGAACATCCTGTTGATTGTCTGTTCTGTGGTGATCTGGGGCAC
GCAGATCACTCCGCTTCAGATGGTGGGGTATGCTATTGCGCTGTTGGGGT
TGTTGTATTATTCTCTGGGGTGGGCGACTATTAGGGGGGCATATGATGCT
GGGTATGTCAGGTTGGTTGGAAGGCAAGCGGAGAGGATGAAGGAGGAGGA
GGATGTATAGGCATGCGGCCCAATAGTGACCCTCCTCACCAGCTGGGCCT
GGCACGTCAAAACCCCCTCGCTCGAATCCTTCCTCAACATCCTCCTCATC
GCCTTCAGTGTCGCCCTCGCTGTCGCCGGCGAAGTCCAATTCTCCTGGCT
CGGCGTCACCTACCAACTCGCCAGTCTTGTCTTCGACGCCAACCGTCTTG
TCATGATCCAGATCCTGCTGTCAGACGAGGGCCAGAAAATGGACCCCCTT
GTGACTTTGTACTATTCTGCACCGGTGTGCGCCTTCACCAACTTCATGAT
TGCGTTTTATACTGAGCTGCGCGGGTTCAGTTGGAGTGTGATTGGGGAGA
CTGGGGTCGGGGTTTTGGTTGCGAACGCTACGGTGGGGTTCATGTTGAAT
GTGTCGATTTTTGTTTTGCAATCATCCTAACAACATGGCATCTCGTCTTC
GCAACCCTAGCCACTCAACTTCTTGCCCGAACCACCACCATGCTCGACGG
TCGCAAGAAAATCCGCATGGACGGCCGAACCTACGTCCGCATGATCATTC
CCATCGGCATTCTCTACAGCGGTAGTCTCGTCTGCAGCAACATCGTCTAC
CTCTACTTGAATGTTTCCTTTATCCAGATGCTCAAAGGTACCATCGTGGG
TGTTTTGGTCGAATCTGACCATTTTATTCAATAAATGGGTTATTGAATCT
ACTGAATTCCATGACGATTCTGGATCTTCCGGCCAAGGAGGCTTCAGTAT
GGCCTGTTACCCTGGGCATTCTATCGGAAAGACATCCGGTTTGACCATGA
CACTGGTTAGTGTGCCGAAGAACATCCTGTTGATTGTCTGTTCTGTGGTG
ATCTGGGGCACGCAGATCACTCCGCTTCAGATGGTGGGGTATGCTATTGC
GCTGTTGGGGTTGTTGTATTATTCTCTGGGGTGGGCGACTATTAGGGGGG
CATATGATGCTGGGTATGTCAGGTTGGTTGGAAGGCAAGCGGAGAGGATG
AAGGAGGAGGAGGATGTATAGGCATGCGGCCCAATAGTGACCCTCCTCAC
CAGCTGGGCCTGGCACGTCAAAACCCCCTCGCTCGAATCCTTCCTCAACA
TCCTCCTCATCGCCTTCAGTGTCGCCCTCGCTGTCGCCGGCGAAGTCCAA
TTCTCCTGGCTCGGCGTCACCTACCAACTCGCCAGTCTTGTCTTCGACGC
CAACCGTCTTGTCATGATCCAGATCCTGCTGTCAGACGAGGGCCAGAAAA
TGGACCCCCTTGTGACTTTGTACTATTCTGCACCGGTGTGCGCCTTCACC
AACTTCATGATTGCGTTTTATACTGAGCTGCGCGGGTTCAGTTGGAGTGT
GATTGGGGAGACTGGGGTCGGGGTTTTGGTTGCGAACGCTACGGTGGGGT
TCATGTTGAATGTGTCGATTTTTGTTTTGCAATCATCCTAACAACATGGC
ATCTCGTCTTCGCAACCCTAGCCACTCAACTTCTTGCCCGAACCACCACC
ATGCTCGACGGTCGCAAGAAAATCCGCATGGACGGCCGAACCTACGTCCG
CATGATCATTCCCATCGGCATTCTCTACAGCGGTAGTCTCGTCTGCAGCA
ACATCGTCTACCTCTACTTGAATGTTTCCTTTATCCAGATGCTCAAAGGT
ACCATCGTGGGTGTTTTGGTCGAATCTGACCATTTTATTCAATAAATGGG
TTATTGAATCTACTGAATTCCATGACGATTCTGGATCTTCCGGCCAAGGA
GGCTTCAGTATGGCCTGTTACCCTGGGCATTCTATCGGAAAGACATCCGG
TTTGACCATGACACTGGTTAGTGTGCCGAAGAACATCCTGTTGATTGTCT
GTTCTGTGGTGATCTGGGGCACGCAGATCACTCCGCTTCAGATGGTGGGG
TATGCTATTGCGCTGTTGGGGTTGTTGTATTATTCTCTGGGGTGGGCGAC
TATTAGGGGGGCATATGATGCTGGGTATGTCAGGTTGGTTGGAAGGCAAG
CGGAGAGGATGAAGGAGGAGGAGGATGTATAGGCATGCGGCCCAATAGTG
ACCCTCCTCACCAGCTGGGCCTGGCACGTCAAAACCCCCTCGCTCGAATC
CTTCCTCAACATCCTCCTCATCGCCTTCAGTGTCGCCCTCGCTGTCGCCG
GCGAAGTCCAATTCTCCTGGCTCGGCGTCACCTACCAACTCGCCAGTCTT
GTCTTCGACGCCAACCGTCTTGTCATGATCCAGATCCTGCTGTCAGACGA
GGGCCAGAAAATGGACCCCCTTGTGACTTTGTACTATTCTGCACCGGTGT
GCGCCTTCACCAACTTCATGATTGCGTTTTATACTGAGCTGCGCGGGTTC
AGTTGGAGTGTGATTGGGGAGACTGGGGTCGGGGTTTTGGTTGCGAACGC
TACGGTGGGGTTCATGTTGAATGTGTCGATTTTTGTTTTGCAATCATCCT
AACAACATGGCATCTCGTCTTCGCAACCCTAGCCACTCAACTTCTTGCCC
GAACCACCACCATGCTCGACGGTCGCAAGAAAATCCGCATGGACGGCCGA
ACCTACGTCCGCATGATCATTCCCATCGGCATTCTCTACAGCGGTAGTCT
CGTCTGCAGCAACATCGTCTACCTCTACTTGAATGTTTCCTTTATCCAGA
TGCTCAAAGGTACCATCGTGGGTGTTTTGGTCGAATCTGACCATTTTATT
CAATAAATGGGTTATTGAATCTACTGAATTCCATGACGATTCTGGATCTT
CCGGCCAAGGAGGCTTCAGTATGGCCTGTTACCCTGGGCATTCTATCGGA
AAGACATCCGGTTTGACCATGACACTGGTTAGTGTGCCGAAGAACATCCT
GTTGATTGTCTGTTCTGTGGTGATCTGGGGCACGCAGATCACTCCGCTTC
AGATGGTGGGGTATGCTATTGCGCTGTTGGGGTTGTTGTATTATTCTCTG
GGGTGGGCGACTATTAGGGGGGCATATGATGCTGGGTATGTCAGGTTGGT
TGGAAGGCAAGCGGAGAGGATGAAGGAGGAGGAGGATGTATAGGCATGCG
GCCCAATAGTGACCCTCCTCACCAGCTGGGCCTGGCACGTCAAAACCCCC
TCGCTCGAATCCTTCCTCAACATCCTCCTCATCGCCTTCAGTGTCGCCCT
CGCTGTCGCCGGCGAAGTCCAATTCTCCTGGCTCGGCGTCACCTACCAAC
TCGCCAGTCTTGTCTTCGACGCCAACCGTCTTGTCATGATCCAGATCCTG
CTGTCAGACGAGGGCCAGAAAATGGACCCCCTTGTGACTTTGTACTATTC
TGCACCGGTGTGCGCCTTCACCAACTTCATGATTGCGTTTTATACTGAGC
TGCGCGGGTTCAGTTGGAGTGTGATTGGGGAGACTGGGGTCGGGGTTTTG
GTTGCGAACGCTACGGTGGGGTTCATGTTGAATGTGTCGATTTTTGTTTT
GCAATCATCCTAACAACATGGCATCTCGTCTTCGCAACCCTAGCCACTCA
ACTTCTTGCCCGAACCACCACCATGCTCGACGGTCGCAAGAAAATCCGCA
TGGACGGCCGAACCTACGTCCGCATGATCATTCCCATCGGCATTCTCTAC
AGCGGTAGTCTCGTCTGCAGCAACATCGTCTACCTCTACTTGAATGTTTC
CTTTATCCAGATGCTCAAAGGTACCATCGTGGGTGTTTTGGTCGAATCTG
ACCATTTTATTCAATAAATGGGTTATTGAATCTACTGAATTCCATGACGA
TTCTGGATCTTCCGGCCAAGGAGGCTTCAGTATGGCCTGTTACCCTGGGC
ATTCTATCGGAAAGACATCCGGTTTGACCATGACACTGGTTAGTGTGCCG
AAGAACATCCTGTTGATTGTCTGTTCTGTGGTGATCTGGGGCACGCAGAT
CACTCCGCTTCAGATGGTGGGGTATGCTATTGCGCTGTTGGGGTTGTTGT
ATTATTCTCTGGGGTGGGCGACTATTAGGGGGGCATATGATGCTGGGTAT
GTCAGGTTGGTTGGAAGGCAAGCGGAGAGGATGAAGGAGGAGGAGGATGT
ATAGGCATGCGGCCCAATAGTGACCCTCCTCACCAGCTGGGCCTGGCACG
TCAAAACCCCCTCGCTCGAATCCTTCCTCAACATCCTCCTCATCGCCTTC
AGTGTCGCCCTCGCTGTCGCCGGCGAAGTCCAATTCTCCTGGCTCGGCGT
CACCTACCAACTCGCCAGTCTTGTCTTCGACGCCAACCGTCTTGTCATGA
TCCAGATCCTGCTGTCAGACGAGGGCCAGAAAATGGACCCCCTTGTGACT
TTGTACTATTCTGCACCGGTGTGCGCCTTCACCAACTTCATGATTGCGTT
TTATACTGAGCTGCGCGGGTTCAGTTGGAGTGTGATTGGGGAGACTGGGG
TCGGGGTTTTGGTTGCGAACGCTACGGTGGGGTTCATGTTGAATGTGTCG
ATTTTTGTTTTGCAATCATCCTAACAACATGGCATCTCGTCTTCGCAACC
CTAGCCACTCAACTTCTTGCCCGAACCACCACCATGCTCGACGGTCGCAA
GAAAATCCGCATGGACGGCCGAACCTACGTCCGCATGATCATTCCCATCG
GCATTCTCTACAGCGGTAGTCTCGTCTGCAGCAACATCGTCTACCTCTAC
TTGAATGTTTCCTTTATCCAGATGCTCAAAGGTACCATCGTGGGTGTTTT
GGTCGAATCTGACCATTTTATTCAATAAATGGGTTATTGAATCTACTGAA
TTCCATGACGATTCTGGATCTTCCGGCCAAGGAGGCTTCAGTATGGCCTG
TTACCCTGGGCATTCT back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007987-T1.utr3p1 | KJC3_007987-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_007987-T1.utr5p1 | KJC3_007987-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR004853 |
| DBxref | PFAM:PF08449 |
| DBxref | PFAM:PF03151 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:606979..608712 - |
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