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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:1005931..1010496+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008113-T1 ID=KJC3_008113-T1|Name=KJC3_008113-T1|organism=Aspergillus niger KJC3|type=mRNA|length=4566bp|location=Sequence derived from alignment at ch6:1005931..1010496+ (Aspergillus niger KJC3)
TTTTATTCTATTTTTTGATTTATTCTATTTCATTTTCTATTTCTTATCTA
TTTTATTTCACGTCTTATTTCTAAGAGTACTACCACTTCTCCTACGTAAT
ACAACTACTACTCTTACTACCAACAACGTACTGTCTACAGTACTCCATAG
ATACTACCACTACCCATTTCGCCGGATCCTCTCTCACCATTTCCAGTTTC
AGTTCCTACGGTTCCTAACGCCGATTGTACGGCAGCCTTTCCACTTCCTC
TTCTCTTCCTCTTCCTCTTCTTTTTTCTCATTCCCTTTCCATTTCCCTCC
CTCTTCCCTCTCGTCATCATCATCGTCATCATCTATCCATTCCATCCATC
CATCCATCCATCCACCCAACTATCTGTCTATCGATCGATCTATTCCTTCT
CTCATTAAATACTACTCCCAGAAATACGTCGATCCCATCCGAGTGGCAGG
CTCTTGGGTACATGATTTGATTGATTACATCGAGTCCCTACTAAACTACT
TACTACTACTACTCCTACTCCTACTCCTACTACTACAACTACTTCCCACA
CCTGCATGCACTACACCACGAACTAAACCACTATCACCACGCATCCTACC
ACAACTGCCTACGGCACTTACTTAACGCGCCTCCCCCTCCCTCATCTTCC
CACCACCCACTCATTCCCTTCCCACCACTCACTAACCCACTATTACTTGA
CTTGCTACCAATCTCTCTCTCCCTCCTCCCTCCCCCCCTCCTCCTCCCTC
CCTCCCCCCCAAACTCAACCCAATCTAACTTTATCCTTCCCCCGAACGGT
CTTGGTCGTCGCCGTCCTTCCTCTCTTTCTTCTCCTCTCCCTCTTCCCTT
TTCCCTCATCCTTCCCCCCCAATCTCCTCCCCAATCCTTCCCCCATCCCT
CGCCCATCTTCCCTTTCCGTTCCCGTTCGCGTCTTCCATCCTCCCCTATT
CTACTTCTACCTCCCCAACTTCCTCTGTACCATTTACATCTTATTGCTGA
ATCGCATAATCATTCCTTTTTGCATTTGATTATCAATTCATTTTTCAATT
TTTTTTTCCCTTCTTCATTTCCATTCCCATCGTGTGTGGCCTACTTCTTG
TCTTTCCCTCGGACACTCGGTCCGTCGCATCCTTACCTCCTTAAACACGC
ATACCGCGGTCTCAATTGCGCGTGTTAATCCATCGCACTTTTGCTTCCTC
CCAACGAGATTGCGTCGGCATTTTGATCCTATAACTTGGTTGATATACCA
TTTTACATCTTCCACTTGTTCCTGACACTCCTCTGGCTGAGACCCTCCAG
CCTCTGTCCCATCTGTCATCCGGTTGCCTCCCGCACTCCCTTACCTTCTT
GGAGGCGCCCGTGCTCCCGTCCGTTCGTGGGGTTAATCGATCGAGTCAGA
CGCTTTTAGAATTTCGGTCCGCGAGGCATGAGTGGCAGTTCGAATCAGTC
CACCCGTACGAGTCCAGGCTCCTACAGCACTACTCAGCGCACGCCCTCGG
TCTCTTCGGGCGCGTCGCCTACCCACCAGCCGCTTTCGGCCTCTCAAGCG
CCCTCGACGGCTCAGAATGCGATGTCGACCGACGTGTACAATACGCCCGC
ATCGCAGGCACCAACTTCGTTAGGTCCTTCGTTTACCTACCCTTTCTCCC
CGATCGGCCCCTCTCCCGCTTTTGACAACGTTTCCTCGTCTGCTATGCGT
CTGGGCGACTCGGATCGGTCGGCGCAGGGCCTGAATGGCTTTATCCGACC
GACAAATGGAACAGGTGGAGGCGCGATCCTCATGCGCAAACTCCCGCGCA
ACACCAGTCGCGATGCTCTGCGCAGCATGCTACTCTTCGCCAAAGATTTT
GTGGATGCCGACTTTGTGCCTTCTGACGCTCCGGAGGATAACGGATACTT
GTGTGCGGTCGCGCGTTTCAGCACCCTGGCTGCCGCGGAAGAAGCACGAG
CACTTCTCGACGGCAAACCAAATTCGAAGAACGACGCCACCATGATTGTG
GAAATGTTCTACGGCTCCGTTGGTTCTTCCTTGGTGCCCAGGCGAAACAC
AATCGACCACACCGCGACTCGGGGCTTACTGGGACATGTTAATGGAGGCT
TACCGCGACAGTCGTCACGCTTCAACGGAACCTTCCAGACCTTGGAGAAG
CTGAGCGCGACCACGGGACCTGCTACCGCTGGTGATACCCTACCCCCATC
TGAACCTGGCTCCCGGCTTCACAGTCTCTTCTCCCCCCAGTCCCCGATCG
GCAACGGCGTTCCCGAGCTCCCGCGGGTCAGTGGCAAATCGATGATTGAT
CAGGATATTGATGAAGATACTGGAGAGTTGCTCAAGGATCCTGTGGGCTA
TGCCGAAAACGGGCATTCGTCTTCTGTTTCTGTCCCTCGACGCTCCACGA
ACCCTCAGATTCTGGGTAACCAGTTTGCCAACATGTCTTTGTCTGGCAAT
CTCAATTCCCCTCCACTACCTAATTATAACCAAGGGGGAAACACGCACAT
TGGCGTTCCAAACCCTCCATCGACGTTCCCCCAACCGATGAACAATAACA
TCGGGACGGGCCATGTGTTCCCTTATGGTAATCCGCATGTACCTCGCCAT
AGTCTCCCTGCAGCCAACCCGAACGACATGAACCCTCCATGCAATACATT
ATACGTGGGAAACTTACCCCCAGATACCTCAGAGGAGGAGCTGAAGGCTC
TGTTCTCGAAGCAGCGTGGATACAAGCGGTTGTGCTTCCGAAACAAACAG
AACGGGCCGATGTGCTTCGTGGAATTTGACGATGTGGGCACCGCTGGAAA
AGCGCTAAACGAGCTGTATGGCGTGAAGTTGTCCAACAGTATCAAGACCG
GTATCCGCCTAAGCTTTTCGAAGAACCCTCTCGGGGTCCGATCAGGACAG
CCCGGGTCCATGAGCGCGTCTAATGCCATGGCCTCTCAAGGTGGTGTGCC
TGGGGGCAGTAGTCTTGGTGGAATGCACAATCACATGTTTTCGACGGTCA
GTGGACCGCCACCGGGCCTGTCTGCGCCCCCGGGTTTGGTTCCACCCGTG
GCAATCAGAAACAACGGTGCCATGCATCCCTCCGGGAGTCCAAATGCGCC
ATTGCCCAGCAACGGTACTTTCAATGCCAATTCGGGACTGGGAATCCGGA
CAAATCCGATGAACGCAATGGTGTCCCCGCCACCTCAGCTCACCGGCGGA
GCTTCAGGACCCAATGTGGGTGGCTACAATTCCTACTACCCGGATTATAT
GATGGGTCGGTAGGAAGATGCACGTTTCTGTGGAGATAATGTCCGACATG
CTTGACGATCACTGGGCTACCTGGCGCATTGGGGGTTGTTATTGTTTCTA
TTTCATAAGCTAGATCAGCATTTGGAGGCTCGCCTTCCTCCTGGGAGTAA
GGACCACGGGGCTCTCGCTTTTTCAGCTTTGCTTTCTATGATTGTATTCC
GTTCGTTTGCTGTGCACTCCGATAGCATGGGATCAGGGGCGCTGTTACTA
TACATGTCGTGTTTGTTGTTATCTTTTCTTGGGTGGGAGACATTGCATTT
GTGCGCGTATGGGTTTCTCTTTAATACGTCCAGGAGCCCGTGAGGATTTT
CATTGCCAACTTCGCCTGTTTCACTTGCCCTGTCGTCATGTTTGCACTAC
CTTCATACCCTGTGCCGTGTTGCTGCGTTATCTTTTTTCAGATGTTTTCC
TAATAGTTGCTTTCTCTGCCTTTCCTTCCTACGCGAGGGGAGGGTTCGAT
TGTCTGCCTGCTCTTCTCCAAATCTCTGTGCGTGCTATCGTCTATCTGTG
GGAAATTGCCGATCATTTTGCTTGACTAAATCTTTCAGCCCTTCGTTTGA
CCCCCTCAATCACGCAGGATGGGAGAAGGATGTGTTGGCCGAGGCCTGAA
CGCCAGAAATCACGGGAATCCCGGAGGGAAGTTCTTTGTGCTGGATCTAC
CGACCACCCTCCCGTGTTGTGATACATTGTTTGCAGCATTCATCTGGACA
ACAGCTAATCATTGTGCGGGGCGTTTACCTGGGTACCTATACACTTGAGA
TACATTTCTGGGACGTCTTCTATCTGTCTTACTCTGATCATTGGGCAAGG
GAGTATCCCGAGGTATGTGTTGGCTGCTGCCGGCCGCCTGGGATTGTAGC
GCATTGTTCCGTCCCTTATTCGCATCGTGTTTTGCAGCGTCGTTGCTCTT
CCGCCATTGCTTGGGTTACATGGGAGTCATGGAGGCTATTACTACCCTAT
TCATCTTTCTTTTCTTTTCTTTTCTTTCTTTCTTTCTTTCTTTTTTTTTT
TTTTTTTTTTCCCGTCAACTTTGCTAGTCTTTATTCTTCTTTTTGTTCCC
TTCGCCGGGGGGAACTGTTGATGATGGGCGGGAATTTACCCTGGAAAAGA
GGCGTGTTGAATTTGCTTCCCTTCTCCTAGCTTCGCGGGAAATTGCTCTA
CATGTACCAGCTTCAACAATTGAATTGCACCGGTCAGTTACTTGAGAGCG
TATGAGTCTCTTAAATTGGAAGGGAGAAAGTTCGTAGTTCGAGCCCCTGG
GGCAATGAAGCTGAAG back to topCoding sequence (CDS) from alignment at ch6:1005931..1010496+ >KJC3_008113-T1 ID=KJC3_008113-T1|Name=KJC3_008113-T1|organism=Aspergillus niger KJC3|type=CDS|length=1836bp|location=Sequence derived from alignment at ch6:1005931..1010496+ (Aspergillus niger KJC3)
ATGAGTGGCAGTTCGAATCAGTCCACCCGTACGAGTCCAGGCTCCTACAG
CACTACTCAGCGCACGCCCTCGGTCTCTTCGGGCGCGTCGCCTACCCACC
AGCCGCTTTCGGCCTCTCAAGCGCCCTCGACGGCTCAGAATGCGATGTCG
ACCGACGTGTACAATACGCCCGCATCGCAGGCACCAACTTCGTTAGGTCC
TTCGTTTACCTACCCTTTCTCCCCGATCGGCCCCTCTCCCGCTTTTGACA
ACGTTTCCTCGTCTGCTATGCGTCTGGGCGACTCGGATCGGTCGGCGCAG
GGCCTGAATGGCTTTATCCGACCGACAAATGGAACAGGTGGAGGCGCGAT
CCTCATGCGCAAACTCCCGCGCAACACCAGTCGCGATGCTCTGCGCAGCA
TGCTACTCTTCGCCAAAGATTTTGTGGATGCCGACTTTGTGCCTTCTGAC
GCTCCGGAGGATAACGGATACTTGTGTGCGGTCGCGCGTTTCAGCACCCT
GGCTGCCGCGGAAGAAGCACGAGCACTTCTCGACGGCAAACCAAATTCGA
AGAACGACGCCACCATGATTGTGGAAATGTTCTACGGCTCCGTTGGTTCT
TCCTTGGTGCCCAGGCGAAACACAATCGACCACACCGCGACTCGGGGCTT
ACTGGGACATGTTAATGGAGGCTTACCGCGACAGTCGTCACGCTTCAACG
GAACCTTCCAGACCTTGGAGAAGCTGAGCGCGACCACGGGACCTGCTACC
GCTGGTGATACCCTACCCCCATCTGAACCTGGCTCCCGGCTTCACAGTCT
CTTCTCCCCCCAGTCCCCGATCGGCAACGGCGTTCCCGAGCTCCCGCGGG
TCAGTGGCAAATCGATGATTGATCAGGATATTGATGAAGATACTGGAGAG
TTGCTCAAGGATCCTGTGGGCTATGCCGAAAACGGGCATTCGTCTTCTGT
TTCTGTCCCTCGACGCTCCACGAACCCTCAGATTCTGGGTAACCAGTTTG
CCAACATGTCTTTGTCTGGCAATCTCAATTCCCCTCCACTACCTAATTAT
AACCAAGGGGGAAACACGCACATTGGCGTTCCAAACCCTCCATCGACGTT
CCCCCAACCGATGAACAATAACATCGGGACGGGCCATGTGTTCCCTTATG
GTAATCCGCATGTACCTCGCCATAGTCTCCCTGCAGCCAACCCGAACGAC
ATGAACCCTCCATGCAATACATTATACGTGGGAAACTTACCCCCAGATAC
CTCAGAGGAGGAGCTGAAGGCTCTGTTCTCGAAGCAGCGTGGATACAAGC
GGTTGTGCTTCCGAAACAAACAGAACGGGCCGATGTGCTTCGTGGAATTT
GACGATGTGGGCACCGCTGGAAAAGCGCTAAACGAGCTGTATGGCGTGAA
GTTGTCCAACAGTATCAAGACCGGTATCCGCCTAAGCTTTTCGAAGAACC
CTCTCGGGGTCCGATCAGGACAGCCCGGGTCCATGAGCGCGTCTAATGCC
ATGGCCTCTCAAGGTGGTGTGCCTGGGGGCAGTAGTCTTGGTGGAATGCA
CAATCACATGTTTTCGACGGTCAGTGGACCGCCACCGGGCCTGTCTGCGC
CCCCGGGTTTGGTTCCACCCGTGGCAATCAGAAACAACGGTGCCATGCAT
CCCTCCGGGAGTCCAAATGCGCCATTGCCCAGCAACGGTACTTTCAATGC
CAATTCGGGACTGGGAATCCGGACAAATCCGATGAACGCAATGGTGTCCC
CGCCACCTCAGCTCACCGGCGGAGCTTCAGGACCCAATGTGGGTGGCTAC
AATTCCTACTACCCGGATTATATGATGGGTCGGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008113-T1.utr5p1 | KJC3_008113-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008113-T1.utr3p1 | KJC3_008113-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR035979 |
| DBxref | InterPro:IPR012677 |
| DBxref | InterPro:IPR000504 |
| DBxref | PFAM:PF00076 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:1005931..1010496 + |
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