You are here

Home

KJC3_008117-T1, KJC3_008117-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_008117-T1
Unique NameKJC3_008117-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:1020020..1021076-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_008117-T1 ID=KJC3_008117-T1|Name=KJC3_008117-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1057bp|location=Sequence derived from alignment at ch6:1020020..1021076- (Aspergillus niger KJC3)
ATGGCGCGCTTCAGAGCCAGCAATATTCTGGGCGACCCCTTTGCGCTCGC
AACCACGTCCATCTCCATTGTATGTCTTCAATTCGTCCTCGTGCGGTGGT
TAGGATCCGCTGCTAATCACCTTTTCTTCGTTTAGTTGGCTTGGTTGATC
GCATTTATCTCCTCCATTGTCACTGGCGTACATGGCGGATATCCCACCTA
TTCATGGTGGGCTGTTGCTTACTCATTTTGCTGCATTGTCGGCATGGCGC
TTGTCTTCGGCACCGATACTGGTGCCGTCTATAACATAGCGGTATGTTAC
CATCCCTCCTGAATCAATCTTTTGACAACCCTTCGTACTGATTTATGGCA
GATCGTGGGGTATCTTTCCGCTGGTCTTGTTATCACAACAATCTCCATCA
ACACGTTAGTCTATGCAAACAGCGCCGCATCGCAGGCTGCCGGTGCTGGG
TTCATTCTTTTGGCTATGGTTATTGTAAGTGATAACCAGCTCCGACACAC
ATACCCACTAGGCAGTACGTGACTTACCATTAATGCAGATCATTTGGATT
TTCTACTTCGGATCTAGCCCTCAGGCTTCGCATCGCGGCTTCATCGATTC
ATTTGCCCTCCAGAAGGAAGGTGCTGGCTCGTACGGAAATGGCAGACCTA
TGTCAACTGCATTCGGCAATCGACCCGAGACGACATCCAGCCAGCCCCCG
CAGATGTACACGTCCGCTCAACTCAACGGCTTCGAGACCTCTTCGCCCGT
GTCGGGTTATCCCGGAGGAGCCCCCGGCTCCGAACACCGCAGCTCCTCGC
AGCCCCGCTTCGGCAACCCGTCCGCTACGAATCTGCCCAACAATGGCGCA
CCAGATGAAGTCCCCCAGCCCACGGAATATCCGTACCGTGCGAAGGCGAT
CTATTCGTATGAGGCCAACCCTGAAGATGCCAATGAGATCAGTTTCACCA
AGCATGAGATCTTGGAGGTGTCCGATGTGAGCGGTAGATGGTGGCAGGCC
AGGAAGGCCACCGGAGAGACCGGTATTGCTCCATCCAACTACCTGATCTT
GCTGTGA
back to top

Coding sequence (CDS) from alignment at ch6:1020020..1021076-

>KJC3_008117-T1 ID=KJC3_008117-T1|Name=KJC3_008117-T1|organism=Aspergillus niger KJC3|type=CDS|length=3468bp|location=Sequence derived from alignment at ch6:1020020..1021076- (Aspergillus niger KJC3)
ATCATTTGGATTTTCTACTTCGGATCTAGCCCTCAGGCTTCGCATCGCGG
CTTCATCGATTCATTTGCCCTCCAGAAGGAAGGTGCTGGCTCGTACGGAA
ATGGCAGACCTATGTCAACTGCATTCGGCAATCGACCCGAGACGACATCC
AGCCAGCCCCCGCAGATGTACACGTCCGCTCAACTCAACGGCTTCGAGAC
CTCTTCGCCCGTGTCGGGTTATCCCGGAGGAGCCCCCGGCTCCGAACACC
GCAGCTCCTCGCAGCCCCGCTTCGGCAACCCGTCCGCTACGAATCTGCCC
AACAATGGCGCACCAGATGAAGTCCCCCAGCCCACGGAATATCCGTACCG
TGCGAAGGCGATCTATTCGTATGAGGCCAACCCTGAAGATGCCAATGAGA
TCAGTTTCACCAAGCATGAGATCTTGGAGGTGTCCGATGTGAGCGGTAGA
TGGTGGCAGGCCAGGAAGGCCACCGGAGAGACCGGTATTGCTCCATCCAA
CTACCTGATCTTGCTGTGAATCGTGGGGTATCTTTCCGCTGGTCTTGTTA
TCACAACAATCTCCATCAACACGTTAGTCTATGCAAACAGCGCCGCATCG
CAGGCTGCCGGTGCTGGGTTCATTCTTTTGGCTATGGTTATTTTGGCTTG
GTTGATCGCATTTATCTCCTCCATTGTCACTGGCGTACATGGCGGATATC
CCACCTATTCATGGTGGGCTGTTGCTTACTCATTTTGCTGCATTGTCGGC
ATGGCGCTTGTCTTCGGCACCGATACTGGTGCCGTCTATAACATAGCGAT
GGCGCGCTTCAGAGCCAGCAATATTCTGGGCGACCCCTTTGCGCTCGCAA
CCACGTCCATCTCCATTATCATTTGGATTTTCTACTTCGGATCTAGCCCT
CAGGCTTCGCATCGCGGCTTCATCGATTCATTTGCCCTCCAGAAGGAAGG
TGCTGGCTCGTACGGAAATGGCAGACCTATGTCAACTGCATTCGGCAATC
GACCCGAGACGACATCCAGCCAGCCCCCGCAGATGTACACGTCCGCTCAA
CTCAACGGCTTCGAGACCTCTTCGCCCGTGTCGGGTTATCCCGGAGGAGC
CCCCGGCTCCGAACACCGCAGCTCCTCGCAGCCCCGCTTCGGCAACCCGT
CCGCTACGAATCTGCCCAACAATGGCGCACCAGATGAAGTCCCCCAGCCC
ACGGAATATCCGTACCGTGCGAAGGCGATCTATTCGTATGAGGCCAACCC
TGAAGATGCCAATGAGATCAGTTTCACCAAGCATGAGATCTTGGAGGTGT
CCGATGTGAGCGGTAGATGGTGGCAGGCCAGGAAGGCCACCGGAGAGACC
GGTATTGCTCCATCCAACTACCTGATCTTGCTGTGAATCGTGGGGTATCT
TTCCGCTGGTCTTGTTATCACAACAATCTCCATCAACACGTTAGTCTATG
CAAACAGCGCCGCATCGCAGGCTGCCGGTGCTGGGTTCATTCTTTTGGCT
ATGGTTATTTTGGCTTGGTTGATCGCATTTATCTCCTCCATTGTCACTGG
CGTACATGGCGGATATCCCACCTATTCATGGTGGGCTGTTGCTTACTCAT
TTTGCTGCATTGTCGGCATGGCGCTTGTCTTCGGCACCGATACTGGTGCC
GTCTATAACATAGCGATGGCGCGCTTCAGAGCCAGCAATATTCTGGGCGA
CCCCTTTGCGCTCGCAACCACGTCCATCTCCATTATCATTTGGATTTTCT
ACTTCGGATCTAGCCCTCAGGCTTCGCATCGCGGCTTCATCGATTCATTT
GCCCTCCAGAAGGAAGGTGCTGGCTCGTACGGAAATGGCAGACCTATGTC
AACTGCATTCGGCAATCGACCCGAGACGACATCCAGCCAGCCCCCGCAGA
TGTACACGTCCGCTCAACTCAACGGCTTCGAGACCTCTTCGCCCGTGTCG
GGTTATCCCGGAGGAGCCCCCGGCTCCGAACACCGCAGCTCCTCGCAGCC
CCGCTTCGGCAACCCGTCCGCTACGAATCTGCCCAACAATGGCGCACCAG
ATGAAGTCCCCCAGCCCACGGAATATCCGTACCGTGCGAAGGCGATCTAT
TCGTATGAGGCCAACCCTGAAGATGCCAATGAGATCAGTTTCACCAAGCA
TGAGATCTTGGAGGTGTCCGATGTGAGCGGTAGATGGTGGCAGGCCAGGA
AGGCCACCGGAGAGACCGGTATTGCTCCATCCAACTACCTGATCTTGCTG
TGAATCGTGGGGTATCTTTCCGCTGGTCTTGTTATCACAACAATCTCCAT
CAACACGTTAGTCTATGCAAACAGCGCCGCATCGCAGGCTGCCGGTGCTG
GGTTCATTCTTTTGGCTATGGTTATTTTGGCTTGGTTGATCGCATTTATC
TCCTCCATTGTCACTGGCGTACATGGCGGATATCCCACCTATTCATGGTG
GGCTGTTGCTTACTCATTTTGCTGCATTGTCGGCATGGCGCTTGTCTTCG
GCACCGATACTGGTGCCGTCTATAACATAGCGATGGCGCGCTTCAGAGCC
AGCAATATTCTGGGCGACCCCTTTGCGCTCGCAACCACGTCCATCTCCAT
TATCATTTGGATTTTCTACTTCGGATCTAGCCCTCAGGCTTCGCATCGCG
GCTTCATCGATTCATTTGCCCTCCAGAAGGAAGGTGCTGGCTCGTACGGA
AATGGCAGACCTATGTCAACTGCATTCGGCAATCGACCCGAGACGACATC
CAGCCAGCCCCCGCAGATGTACACGTCCGCTCAACTCAACGGCTTCGAGA
CCTCTTCGCCCGTGTCGGGTTATCCCGGAGGAGCCCCCGGCTCCGAACAC
CGCAGCTCCTCGCAGCCCCGCTTCGGCAACCCGTCCGCTACGAATCTGCC
CAACAATGGCGCACCAGATGAAGTCCCCCAGCCCACGGAATATCCGTACC
GTGCGAAGGCGATCTATTCGTATGAGGCCAACCCTGAAGATGCCAATGAG
ATCAGTTTCACCAAGCATGAGATCTTGGAGGTGTCCGATGTGAGCGGTAG
ATGGTGGCAGGCCAGGAAGGCCACCGGAGAGACCGGTATTGCTCCATCCA
ACTACCTGATCTTGCTGTGAATCGTGGGGTATCTTTCCGCTGGTCTTGTT
ATCACAACAATCTCCATCAACACGTTAGTCTATGCAAACAGCGCCGCATC
GCAGGCTGCCGGTGCTGGGTTCATTCTTTTGGCTATGGTTATTTTGGCTT
GGTTGATCGCATTTATCTCCTCCATTGTCACTGGCGTACATGGCGGATAT
CCCACCTATTCATGGTGGGCTGTTGCTTACTCATTTTGCTGCATTGTCGG
CATGGCGCTTGTCTTCGGCACCGATACTGGTGCCGTCTATAACATAGCGA
TGGCGCGCTTCAGAGCCAGCAATATTCTGGGCGACCCCTTTGCGCTCGCA
ACCACGTCCATCTCCATT
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SHO1KJC3_008117Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008117-T1KJC3_008117-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008117-T1.cdsKJC3_008117-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008117-T1.exon4KJC3_008117-T1.exon4Aspergillus niger KJC3exon
KJC3_008117-T1.exon3KJC3_008117-T1.exon3Aspergillus niger KJC3exon
KJC3_008117-T1.exon2KJC3_008117-T1.exon2Aspergillus niger KJC3exon
KJC3_008117-T1.exon1KJC3_008117-T1.exon1Aspergillus niger KJC3exon


Properties
Property NameValue
DBxrefInterPro:IPR036028
DBxrefInterPro:IPR035522
DBxrefInterPro:IPR001452
DBxrefPFAM:PF07653
DBxrefPFAM:PF00018
ProductTransmembrane osmosensor
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:1020020..1021076 -
Powered by Drupal