You are here

Home

KJC3_008180-T1, KJC3_008180-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_008180-T1
Unique NameKJC3_008180-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:1192635..1194641-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_008180-T1 ID=KJC3_008180-T1|Name=KJC3_008180-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2007bp|location=Sequence derived from alignment at ch6:1192635..1194641- (Aspergillus niger KJC3)
TGCTGGCCGATGCCCTACCCCGACTTCCCCCAGTTCTCCACACCTTGCTC
ACCTGCCGTACCCCAGCTAAACGTGCGTCGGTGGGTTCAGCACTTTGATG
AGCCGTCCAGCGTCTTTCACGCCATGGATATGGGTAAACCCGCCTCGCTA
CGGTTGGTGGTATTCACATGGCTTTGGTTCCCGAATTATATGCAGGGTTA
CGGGCTCACTAGTAGCATTAACGGCATCGCTCAACAGCCGTCCTGACCGA
GAAGAGCCACACGAGGCGTAGCCAGCGGGGGTGCGAAAGGTTAAACCGCC
GACATATCGACGCCTCCTAGGCCACCCTTGAAATAGCCTGTGCCTCCTCG
AATTTGCTTGTGCTGAGTTTTAGTTTCTTTTCCAAACGCCGTCGAAACCG
ACCATGGGAGTTAGCAAAGCAGACACGACGAGCAAACATGCAGGAGAGGA
CCACCTCGCGGCGGTCCTCCCTTCAGGTCCTGCATGGTACAAGCAGCCTC
ACTTGGTGCGGCTCAACCTCATCATTCTCTCATTGGTTATGTTCTCGTCC
GCCAACGGCTATGACGGATCTCTCATGAACGGTCTTGAGGCCTTGGACCA
GTGGAAGGCCTTTATGAACAATCCTACCGGAGCAAGGCTGGGCTGGCTGA
ATGCGATCTACTGGCTTGGCTGCGGCATTGGTTACCCAACTGCAGCCTGG
ATTTCCAACCGGTATGGCCGCAAGCCAGGCGTCTACGTCGGATATCTCTT
CTTGACGCTGGGGTGCGTCCTCCAGACTGCTGCTCCCAATGCAGTTGCGT
TTATGCTTGCTCGGCTCTTTCTGGGGGGTGCGTCTGCCCTGTTCGGTAAT
GCCGTTCCTCTGCTCATCAACGAGGTCGCCTACCCGACTCACCGCGGCAT
GCTCAACTCGCTGTTCATGTCCGGCTGGTATGTCGGTGGGACTGTCGCTG
CTTGGGTCGTCTTTGCCTCTCGTACCTACGACTCTTCTTGGGCTTGGAGA
CTCCCTTCTGTCCTCCAAGCCCTAGTGCCCGTCGTTGGACTGCCGGGGTT
CCTCCTGGCCCCGGAAAGTCCCCGCTGGTTGATCTCGGTCGGACGCAACG
AAGAGGCCCGGGCAATCCTTACCCGCTATCACGCTGCTGGCGACGAGACC
TCTCCCCTTGTGGCATATGAATTTTCCGAGATCAGTTCCACCATCCGAGC
GGAACAAGAAGCCCACAGCAGTGCCAGCTACATAGAGATGGTAAAGACAC
CGGGAAACCGCTGGCGCCTGATGATCTCTATCACTCTGGGATTATTTGCG
CAGTGGTCCGGCAACGGAGTGGTCTCGTATTACCTGTCGCTCATCCTGGA
CTCGGTCGGAGTCACCAGTGTCCGTGACCAGACGCTCATCTCGGCCTGTC
TACAAATGTGGGATTTGATTTTTGCTGCCCTGGGAGCGTTCCTGATCGAC
CGACTCGGTCGCCGTCCGCTGTTCCTGGCCTCGGCGGTCATCATGTTCGT
CAGCTACGTGCTGGTGACAGCGCTCTCGGGATCTTTCAAGGCGACCAATA
ACGCGTCCACGGGGGCTGCTGTGATTCCGTTCTTGTTTATCTTCTTTTCA
GGATATTGCATTGCTCTGTTAGTCCCACCACCACCAGCAGCAACTTAGTG
TTTACGCTAACGTGATGATCTAGCACACCTTTTCTTACCTCGTATCCCTG
CGAAATCTGGCCGTACCGACTACGATCCCGCGGTCTGACAGTCACCTGGG
TGGCGACGATTGTCGGCATGTTTTTCAATACGTTTGTGAACCCGATTGCC
CTGGACGCGATTGAGTGGCGGTATTACATTGTGTTTATTGTGGTGTTGGT
GCTGTTCGGAGTGACTGCGTTCTTCTTCTACCCAGAGACAAAGGGATACA
CGCTGGAGCAGGTCGCAGTGATCTTTGATGGGCCGGGGGTAGAGAGGGGA
GAAGATGAAGAGAAGAAAGTGGATAGTGTGCATGAGGAGAGTGTAACTAG
TACCTGA
back to top

Coding sequence (CDS) from alignment at ch6:1192635..1194641-

>KJC3_008180-T1 ID=KJC3_008180-T1|Name=KJC3_008180-T1|organism=Aspergillus niger KJC3|type=CDS|length=3096bp|location=Sequence derived from alignment at ch6:1192635..1194641- (Aspergillus niger KJC3)
CACACCTTTTCTTACCTCGTATCCCTGCGAAATCTGGCCGTACCGACTAC
GATCCCGCGGTCTGACAGTCACCTGGGTGGCGACGATTGTCGGCATGTTT
TTCAATACGTTTGTGAACCCGATTGCCCTGGACGCGATTGAGTGGCGGTA
TTACATTGTGTTTATTGTGGTGTTGGTGCTGTTCGGAGTGACTGCGTTCT
TCTTCTACCCAGAGACAAAGGGATACACGCTGGAGCAGGTCGCAGTGATC
TTTGATGGGCCGGGGGTAGAGAGGGGAGAAGATGAAGAGAAGAAAGTGGA
TAGTGTGCATGAGGAGAGTGTAACTAGTACCTGAATGGGAGTTAGCAAAG
CAGACACGACGAGCAAACATGCAGGAGAGGACCACCTCGCGGCGGTCCTC
CCTTCAGGTCCTGCATGGTACAAGCAGCCTCACTTGGTGCGGCTCAACCT
CATCATTCTCTCATTGGTTATGTTCTCGTCCGCCAACGGCTATGACGGAT
CTCTCATGAACGGTCTTGAGGCCTTGGACCAGTGGAAGGCCTTTATGAAC
AATCCTACCGGAGCAAGGCTGGGCTGGCTGAATGCGATCTACTGGCTTGG
CTGCGGCATTGGTTACCCAACTGCAGCCTGGATTTCCAACCGGTATGGCC
GCAAGCCAGGCGTCTACGTCGGATATCTCTTCTTGACGCTGGGGTGCGTC
CTCCAGACTGCTGCTCCCAATGCAGTTGCGTTTATGCTTGCTCGGCTCTT
TCTGGGGGGTGCGTCTGCCCTGTTCGGTAATGCCGTTCCTCTGCTCATCA
ACGAGGTCGCCTACCCGACTCACCGCGGCATGCTCAACTCGCTGTTCATG
TCCGGCTGGTATGTCGGTGGGACTGTCGCTGCTTGGGTCGTCTTTGCCTC
TCGTACCTACGACTCTTCTTGGGCTTGGAGACTCCCTTCTGTCCTCCAAG
CCCTAGTGCCCGTCGTTGGACTGCCGGGGTTCCTCCTGGCCCCGGAAAGT
CCCCGCTGGTTGATCTCGGTCGGACGCAACGAAGAGGCCCGGGCAATCCT
TACCCGCTATCACGCTGCTGGCGACGAGACCTCTCCCCTTGTGGCATATG
AATTTTCCGAGATCAGTTCCACCATCCGAGCGGAACAAGAAGCCCACAGC
AGTGCCAGCTACATAGAGATGGTAAAGACACCGGGAAACCGCTGGCGCCT
GATGATCTCTATCACTCTGGGATTATTTGCGCAGTGGTCCGGCAACGGAG
TGGTCTCGTATTACCTGTCGCTCATCCTGGACTCGGTCGGAGTCACCAGT
GTCCGTGACCAGACGCTCATCTCGGCCTGTCTACAAATGTGGGATTTGAT
TTTTGCTGCCCTGGGAGCGTTCCTGATCGACCGACTCGGTCGCCGTCCGC
TGTTCCTGGCCTCGGCGGTCATCATGTTCGTCAGCTACGTGCTGGTGACA
GCGCTCTCGGGATCTTTCAAGGCGACCAATAACGCGTCCACGGGGGCTGC
TGTGATTCCGTTCTTGTTTATCTTCTTTTCAGGATATTGCATTGCTCTCA
CACCTTTTCTTACCTCGTATCCCTGCGAAATCTGGCCGTACCGACTACGA
TCCCGCGGTCTGACAGTCACCTGGGTGGCGACGATTGTCGGCATGTTTTT
CAATACGTTTGTGAACCCGATTGCCCTGGACGCGATTGAGTGGCGGTATT
ACATTGTGTTTATTGTGGTGTTGGTGCTGTTCGGAGTGACTGCGTTCTTC
TTCTACCCAGAGACAAAGGGATACACGCTGGAGCAGGTCGCAGTGATCTT
TGATGGGCCGGGGGTAGAGAGGGGAGAAGATGAAGAGAAGAAAGTGGATA
GTGTGCATGAGGAGAGTGTAACTAGTACCTGAATGGGAGTTAGCAAAGCA
GACACGACGAGCAAACATGCAGGAGAGGACCACCTCGCGGCGGTCCTCCC
TTCAGGTCCTGCATGGTACAAGCAGCCTCACTTGGTGCGGCTCAACCTCA
TCATTCTCTCATTGGTTATGTTCTCGTCCGCCAACGGCTATGACGGATCT
CTCATGAACGGTCTTGAGGCCTTGGACCAGTGGAAGGCCTTTATGAACAA
TCCTACCGGAGCAAGGCTGGGCTGGCTGAATGCGATCTACTGGCTTGGCT
GCGGCATTGGTTACCCAACTGCAGCCTGGATTTCCAACCGGTATGGCCGC
AAGCCAGGCGTCTACGTCGGATATCTCTTCTTGACGCTGGGGTGCGTCCT
CCAGACTGCTGCTCCCAATGCAGTTGCGTTTATGCTTGCTCGGCTCTTTC
TGGGGGGTGCGTCTGCCCTGTTCGGTAATGCCGTTCCTCTGCTCATCAAC
GAGGTCGCCTACCCGACTCACCGCGGCATGCTCAACTCGCTGTTCATGTC
CGGCTGGTATGTCGGTGGGACTGTCGCTGCTTGGGTCGTCTTTGCCTCTC
GTACCTACGACTCTTCTTGGGCTTGGAGACTCCCTTCTGTCCTCCAAGCC
CTAGTGCCCGTCGTTGGACTGCCGGGGTTCCTCCTGGCCCCGGAAAGTCC
CCGCTGGTTGATCTCGGTCGGACGCAACGAAGAGGCCCGGGCAATCCTTA
CCCGCTATCACGCTGCTGGCGACGAGACCTCTCCCCTTGTGGCATATGAA
TTTTCCGAGATCAGTTCCACCATCCGAGCGGAACAAGAAGCCCACAGCAG
TGCCAGCTACATAGAGATGGTAAAGACACCGGGAAACCGCTGGCGCCTGA
TGATCTCTATCACTCTGGGATTATTTGCGCAGTGGTCCGGCAACGGAGTG
GTCTCGTATTACCTGTCGCTCATCCTGGACTCGGTCGGAGTCACCAGTGT
CCGTGACCAGACGCTCATCTCGGCCTGTCTACAAATGTGGGATTTGATTT
TTGCTGCCCTGGGAGCGTTCCTGATCGACCGACTCGGTCGCCGTCCGCTG
TTCCTGGCCTCGGCGGTCATCATGTTCGTCAGCTACGTGCTGGTGACAGC
GCTCTCGGGATCTTTCAAGGCGACCAATAACGCGTCCACGGGGGCTGCTG
TGATTCCGTTCTTGTTTATCTTCTTTTCAGGATATTGCATTGCTCT
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_008180KJC3_008180Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008180-T1KJC3_008180-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008180-T1.cdsKJC3_008180-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008180-T1.exon2KJC3_008180-T1.exon2Aspergillus niger KJC3exon
KJC3_008180-T1.exon1KJC3_008180-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008180-T1.utr5p1KJC3_008180-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR036259
DBxrefInterPro:IPR020846
DBxrefInterPro:IPR005829
DBxrefInterPro:IPR003663
DBxrefInterPro:IPR005828
DBxrefPFAM:PF00083
DBxrefPFAM:PF07690
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:1192635..1194641 -
Powered by Drupal