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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:1309645..1311372- Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008222-T1 ID=KJC3_008222-T1|Name=KJC3_008222-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1728bp|location=Sequence derived from alignment at ch6:1309645..1311372- (Aspergillus niger KJC3)
ATGTCGACCCCCGGTCGCCGAACCCACCATGGATGGTAGGATTACACCCA
ATCTTGATTTTCCCCCACTTGCTGTGAAACTGATCGCGACCGCCCAGCTG
GACCTGCAAAGCCCGCCGGCGCAAGTGTGATCGTGCTCGCCCGACGTGTC
AGGTTTGTGCTGAACGCGGAGTGGCATGTGAGGGTTATGATGTGCGTCTC
CGCTGGGGAACCGGAATTGCCTCGCGAGGGCGATTTACCGGCGCCAATGC
GCCAGCCGAGTCGTCGATTCCACCGAGGCTGCAGGGACGACAGAGGGATC
TGATTCGGGAGAGGAGGCGGCAGTTGCAGATAGCTGATCAAGTGTGCGAA
CGTTCTCCTGGATCTGGGACCCTAGTAGAGGGAACTGAAGGTAGGATGTA
GCATCTTAGCGTGTCGTCGTGATGATTGTTGACTCCGCTGAGCTAGAATT
ACAACTTGGCGCGTTGCTTTCCGAACCTTGGAATGCGAATCATGATGCGG
AGGTGTTCAGTGACTGTAAGGCCTGATAGAGGATCACTACTGGCTGCTGA
AAACTAATCAACGAGGGCAGTCCTTTCTTCGGGCATCAACGTCCTTCACT
CCACGACCGTCCAAGATGGTGAAATGCCACTCAAAGTACGGCTACCAGGA
CTTTGTCAACAATCGGAGGCTCTCTATCAAATATGCATCACACTACAGGT
TTCTATACGGTTAGACTTGAAGTCTCAATTCTTCGAGTATTTTGACGCGG
CCTTGAACAAGTTCCGTAGCGAGCTGGCTCAGAGCGAAGCCTACTTAGAG
GATGGTACACTAACTGCTGGATTGCTGTTATGTACTATTGGAGTACGCCT
CATCCTTCTCTATCCTCATCTTCTGAGTTATCACACATCGTTAGCTGATA
GGTGAATATAGATCATGCAAGGGATACCGTGGACTATGCATCTGCGAGGG
ATGTATAACATCCTACAGTCTCACAGTATGGGAAGGTCGCGTGATCGGAT
TTCTGCATTCCGAACTCATTTGTTAGAAGTCATGGGAATCATGGATCTTC
CCACATTTGCAATCGGTAGAATACACCCGTATCTGGGGTTCTGGCGGCAG
CACTGTCGCAATCGATTGACGCCGGACTCATCTGAACAGTATGATGTGGA
GGTCATGAGTGGATTACCACGGTCCTTGGTTGACATCTTCTCTTGTATTG
GTGAGGGCGCAACAGAACAAGATTTCTGGGATTGGCCCGGCTCCAAAGGG
TGCTTTCTGCAGTGTCAGCTCTGGGAAGCATATCGGTTGGCCGGGATGCT
GGTGATCCGACATGGTGCACTGCGCCTGCCATCTGAACTAAACGATATTC
CGGCAGAGCAAGGGCAAAACAAAAGACGATCAGCACTTCCAACGACGGCG
GTGATTATCATGCGACTTCTCAGCTGCGTGGACGCTATATATCGGGCGTC
CTCAGAAGGCGAGGGAAAGGACACATTAACCATCAATGCGATTCCTTATC
CTGTCTTCGTCGCTGGTCTTCAGACTGATGCTCTGAATAAAAACCCGGAC
TCAAGGGATTTTATCCGGAGGATTCTGGTGGCAATCGCCGAGGGACCTTT
CTGGAACAAGCAGTATCGACTACTTCTAGACCTGCTGGAAGAATACTGGA
CCTACCCTGAAAACACAATTAATATCCACCAAATTGCGCAGTCACGAGGA
ATAGAACTCGGGCTCTTCTAATATGGAC back to topCoding sequence (CDS) from alignment at ch6:1309645..1311372- >KJC3_008222-T1 ID=KJC3_008222-T1|Name=KJC3_008222-T1|organism=Aspergillus niger KJC3|type=CDS|length=7395bp|location=Sequence derived from alignment at ch6:1309645..1311372- (Aspergillus niger KJC3)
ATCATGCAAGGGATACCGTGGACTATGCATCTGCGAGGGATGTATAACAT
CCTACAGTCTCACAGTATGGGAAGGTCGCGTGATCGGATTTCTGCATTCC
GAACTCATTTGTTAGAAGTCATGGGAATCATGGATCTTCCCACATTTGCA
ATCGGTAGAATACACCCGTATCTGGGGTTCTGGCGGCAGCACTGTCGCAA
TCGATTGACGCCGGACTCATCTGAACAGTATGATGTGGAGGTCATGAGTG
GATTACCACGGTCCTTGGTTGACATCTTCTCTTGTATTGGTGAGGGCGCA
ACAGAACAAGATTTCTGGGATTGGCCCGGCTCCAAAGGGTGCTTTCTGCA
GTGTCAGCTCTGGGAAGCATATCGGTTGGCCGGGATGCTGGTGATCCGAC
ATGGTGCACTGCGCCTGCCATCTGAACTAAACGATATTCCGGCAGAGCAA
GGGCAAAACAAAAGACGATCAGCACTTCCAACGACGGCGGTGATTATCAT
GCGACTTCTCAGCTGCGTGGACGCTATATATCGGGCGTCCTCAGAAGGCG
AGGGAAAGGACACATTAACCATCAATGCGATTCCTTATCCTGTCTTCGTC
GCTGGTCTTCAGACTGATGCTCTGAATAAAAACCCGGACTCAAGGGATTT
TATCCGGAGGATTCTGGTGGCAATCGCCGAGGGACCTTTCTGGAACAAGC
AGTATCGACTACTTCTAGACCTGCTGGAAGAATACTGGACCTACCCTGAA
AACACAATTAATATCCACCAAATTGCGCAGTCACGAGGAATAGAACTCGG
GCTCTTCTAATCCTTTCTTCGGGCATCAACGTCCTTCACTCCACGACCGT
CCAAGATGGTGAAATGCCACTCAAAGTACGGCTACCAGGACTTTGTCAAC
AATCGGAGGCTCTCTATCAAATATGCATCACACTACAGGTTTCTATACGG
TTAGACTTGAAGTCTCAATTCTTCGAGTATTTTGACGCGGCCTTGAACAA
GTTCCGTAGCGAGCTGGCTCAGAGCGAAGCCTACTTAGAGGATGGTACAC
TAACTGCTGGATTGCTGTTATGTACTATTGGAAATTACAACTTGGCGCGT
TGCTTTCCGAACCTTGGAATGCGAATCATGATGCGGAGGTGTTCAGTGAC
TCTGGACCTGCAAAGCCCGCCGGCGCAAGTGTGATCGTGCTCGCCCGACG
TGTCAGGTTTGTGCTGAACGCGGAGTGGCATGTGAGGGTTATGATGTGCG
TCTCCGCTGGGGAACCGGAATTGCCTCGCGAGGGCGATTTACCGGCGCCA
ATGCGCCAGCCGAGTCGTCGATTCCACCGAGGCTGCAGGGACGACAGAGG
GATCTGATTCGGGAGAGGAGGCGGCAGTTGCAGATAGCTGATCAAGTGTG
CGAACGTTCTCCTGGATCTGGGACCCTAGTAGAGGGAACTGAAGATGTCG
ACCCCCGGTCGCCGAACCCACCATGGATGATCATGCAAGGGATACCGTGG
ACTATGCATCTGCGAGGGATGTATAACATCCTACAGTCTCACAGTATGGG
AAGGTCGCGTGATCGGATTTCTGCATTCCGAACTCATTTGTTAGAAGTCA
TGGGAATCATGGATCTTCCCACATTTGCAATCGGTAGAATACACCCGTAT
CTGGGGTTCTGGCGGCAGCACTGTCGCAATCGATTGACGCCGGACTCATC
TGAACAGTATGATGTGGAGGTCATGAGTGGATTACCACGGTCCTTGGTTG
ACATCTTCTCTTGTATTGGTGAGGGCGCAACAGAACAAGATTTCTGGGAT
TGGCCCGGCTCCAAAGGGTGCTTTCTGCAGTGTCAGCTCTGGGAAGCATA
TCGGTTGGCCGGGATGCTGGTGATCCGACATGGTGCACTGCGCCTGCCAT
CTGAACTAAACGATATTCCGGCAGAGCAAGGGCAAAACAAAAGACGATCA
GCACTTCCAACGACGGCGGTGATTATCATGCGACTTCTCAGCTGCGTGGA
CGCTATATATCGGGCGTCCTCAGAAGGCGAGGGAAAGGACACATTAACCA
TCAATGCGATTCCTTATCCTGTCTTCGTCGCTGGTCTTCAGACTGATGCT
CTGAATAAAAACCCGGACTCAAGGGATTTTATCCGGAGGATTCTGGTGGC
AATCGCCGAGGGACCTTTCTGGAACAAGCAGTATCGACTACTTCTAGACC
TGCTGGAAGAATACTGGACCTACCCTGAAAACACAATTAATATCCACCAA
ATTGCGCAGTCACGAGGAATAGAACTCGGGCTCTTCTAATCCTTTCTTCG
GGCATCAACGTCCTTCACTCCACGACCGTCCAAGATGGTGAAATGCCACT
CAAAGTACGGCTACCAGGACTTTGTCAACAATCGGAGGCTCTCTATCAAA
TATGCATCACACTACAGGTTTCTATACGGTTAGACTTGAAGTCTCAATTC
TTCGAGTATTTTGACGCGGCCTTGAACAAGTTCCGTAGCGAGCTGGCTCA
GAGCGAAGCCTACTTAGAGGATGGTACACTAACTGCTGGATTGCTGTTAT
GTACTATTGGAAATTACAACTTGGCGCGTTGCTTTCCGAACCTTGGAATG
CGAATCATGATGCGGAGGTGTTCAGTGACTCTGGACCTGCAAAGCCCGCC
GGCGCAAGTGTGATCGTGCTCGCCCGACGTGTCAGGTTTGTGCTGAACGC
GGAGTGGCATGTGAGGGTTATGATGTGCGTCTCCGCTGGGGAACCGGAAT
TGCCTCGCGAGGGCGATTTACCGGCGCCAATGCGCCAGCCGAGTCGTCGA
TTCCACCGAGGCTGCAGGGACGACAGAGGGATCTGATTCGGGAGAGGAGG
CGGCAGTTGCAGATAGCTGATCAAGTGTGCGAACGTTCTCCTGGATCTGG
GACCCTAGTAGAGGGAACTGAAGATGTCGACCCCCGGTCGCCGAACCCAC
CATGGATGATCATGCAAGGGATACCGTGGACTATGCATCTGCGAGGGATG
TATAACATCCTACAGTCTCACAGTATGGGAAGGTCGCGTGATCGGATTTC
TGCATTCCGAACTCATTTGTTAGAAGTCATGGGAATCATGGATCTTCCCA
CATTTGCAATCGGTAGAATACACCCGTATCTGGGGTTCTGGCGGCAGCAC
TGTCGCAATCGATTGACGCCGGACTCATCTGAACAGTATGATGTGGAGGT
CATGAGTGGATTACCACGGTCCTTGGTTGACATCTTCTCTTGTATTGGTG
AGGGCGCAACAGAACAAGATTTCTGGGATTGGCCCGGCTCCAAAGGGTGC
TTTCTGCAGTGTCAGCTCTGGGAAGCATATCGGTTGGCCGGGATGCTGGT
GATCCGACATGGTGCACTGCGCCTGCCATCTGAACTAAACGATATTCCGG
CAGAGCAAGGGCAAAACAAAAGACGATCAGCACTTCCAACGACGGCGGTG
ATTATCATGCGACTTCTCAGCTGCGTGGACGCTATATATCGGGCGTCCTC
AGAAGGCGAGGGAAAGGACACATTAACCATCAATGCGATTCCTTATCCTG
TCTTCGTCGCTGGTCTTCAGACTGATGCTCTGAATAAAAACCCGGACTCA
AGGGATTTTATCCGGAGGATTCTGGTGGCAATCGCCGAGGGACCTTTCTG
GAACAAGCAGTATCGACTACTTCTAGACCTGCTGGAAGAATACTGGACCT
ACCCTGAAAACACAATTAATATCCACCAAATTGCGCAGTCACGAGGAATA
GAACTCGGGCTCTTCTAATCCTTTCTTCGGGCATCAACGTCCTTCACTCC
ACGACCGTCCAAGATGGTGAAATGCCACTCAAAGTACGGCTACCAGGACT
TTGTCAACAATCGGAGGCTCTCTATCAAATATGCATCACACTACAGGTTT
CTATACGGTTAGACTTGAAGTCTCAATTCTTCGAGTATTTTGACGCGGCC
TTGAACAAGTTCCGTAGCGAGCTGGCTCAGAGCGAAGCCTACTTAGAGGA
TGGTACACTAACTGCTGGATTGCTGTTATGTACTATTGGAAATTACAACT
TGGCGCGTTGCTTTCCGAACCTTGGAATGCGAATCATGATGCGGAGGTGT
TCAGTGACTCTGGACCTGCAAAGCCCGCCGGCGCAAGTGTGATCGTGCTC
GCCCGACGTGTCAGGTTTGTGCTGAACGCGGAGTGGCATGTGAGGGTTAT
GATGTGCGTCTCCGCTGGGGAACCGGAATTGCCTCGCGAGGGCGATTTAC
CGGCGCCAATGCGCCAGCCGAGTCGTCGATTCCACCGAGGCTGCAGGGAC
GACAGAGGGATCTGATTCGGGAGAGGAGGCGGCAGTTGCAGATAGCTGAT
CAAGTGTGCGAACGTTCTCCTGGATCTGGGACCCTAGTAGAGGGAACTGA
AGATGTCGACCCCCGGTCGCCGAACCCACCATGGATGATCATGCAAGGGA
TACCGTGGACTATGCATCTGCGAGGGATGTATAACATCCTACAGTCTCAC
AGTATGGGAAGGTCGCGTGATCGGATTTCTGCATTCCGAACTCATTTGTT
AGAAGTCATGGGAATCATGGATCTTCCCACATTTGCAATCGGTAGAATAC
ACCCGTATCTGGGGTTCTGGCGGCAGCACTGTCGCAATCGATTGACGCCG
GACTCATCTGAACAGTATGATGTGGAGGTCATGAGTGGATTACCACGGTC
CTTGGTTGACATCTTCTCTTGTATTGGTGAGGGCGCAACAGAACAAGATT
TCTGGGATTGGCCCGGCTCCAAAGGGTGCTTTCTGCAGTGTCAGCTCTGG
GAAGCATATCGGTTGGCCGGGATGCTGGTGATCCGACATGGTGCACTGCG
CCTGCCATCTGAACTAAACGATATTCCGGCAGAGCAAGGGCAAAACAAAA
GACGATCAGCACTTCCAACGACGGCGGTGATTATCATGCGACTTCTCAGC
TGCGTGGACGCTATATATCGGGCGTCCTCAGAAGGCGAGGGAAAGGACAC
ATTAACCATCAATGCGATTCCTTATCCTGTCTTCGTCGCTGGTCTTCAGA
CTGATGCTCTGAATAAAAACCCGGACTCAAGGGATTTTATCCGGAGGATT
CTGGTGGCAATCGCCGAGGGACCTTTCTGGAACAAGCAGTATCGACTACT
TCTAGACCTGCTGGAAGAATACTGGACCTACCCTGAAAACACAATTAATA
TCCACCAAATTGCGCAGTCACGAGGAATAGAACTCGGGCTCTTCTAATCC
TTTCTTCGGGCATCAACGTCCTTCACTCCACGACCGTCCAAGATGGTGAA
ATGCCACTCAAAGTACGGCTACCAGGACTTTGTCAACAATCGGAGGCTCT
CTATCAAATATGCATCACACTACAGGTTTCTATACGGTTAGACTTGAAGT
CTCAATTCTTCGAGTATTTTGACGCGGCCTTGAACAAGTTCCGTAGCGAG
CTGGCTCAGAGCGAAGCCTACTTAGAGGATGGTACACTAACTGCTGGATT
GCTGTTATGTACTATTGGAAATTACAACTTGGCGCGTTGCTTTCCGAACC
TTGGAATGCGAATCATGATGCGGAGGTGTTCAGTGACTCTGGACCTGCAA
AGCCCGCCGGCGCAAGTGTGATCGTGCTCGCCCGACGTGTCAGGTTTGTG
CTGAACGCGGAGTGGCATGTGAGGGTTATGATGTGCGTCTCCGCTGGGGA
ACCGGAATTGCCTCGCGAGGGCGATTTACCGGCGCCAATGCGCCAGCCGA
GTCGTCGATTCCACCGAGGCTGCAGGGACGACAGAGGGATCTGATTCGGG
AGAGGAGGCGGCAGTTGCAGATAGCTGATCAAGTGTGCGAACGTTCTCCT
GGATCTGGGACCCTAGTAGAGGGAACTGAAGATGTCGACCCCCGGTCGCC
GAACCCACCATGGATGATCATGCAAGGGATACCGTGGACTATGCATCTGC
GAGGGATGTATAACATCCTACAGTCTCACAGTATGGGAAGGTCGCGTGAT
CGGATTTCTGCATTCCGAACTCATTTGTTAGAAGTCATGGGAATCATGGA
TCTTCCCACATTTGCAATCGGTAGAATACACCCGTATCTGGGGTTCTGGC
GGCAGCACTGTCGCAATCGATTGACGCCGGACTCATCTGAACAGTATGAT
GTGGAGGTCATGAGTGGATTACCACGGTCCTTGGTTGACATCTTCTCTTG
TATTGGTGAGGGCGCAACAGAACAAGATTTCTGGGATTGGCCCGGCTCCA
AAGGGTGCTTTCTGCAGTGTCAGCTCTGGGAAGCATATCGGTTGGCCGGG
ATGCTGGTGATCCGACATGGTGCACTGCGCCTGCCATCTGAACTAAACGA
TATTCCGGCAGAGCAAGGGCAAAACAAAAGACGATCAGCACTTCCAACGA
CGGCGGTGATTATCATGCGACTTCTCAGCTGCGTGGACGCTATATATCGG
GCGTCCTCAGAAGGCGAGGGAAAGGACACATTAACCATCAATGCGATTCC
TTATCCTGTCTTCGTCGCTGGTCTTCAGACTGATGCTCTGAATAAAAACC
CGGACTCAAGGGATTTTATCCGGAGGATTCTGGTGGCAATCGCCGAGGGA
CCTTTCTGGAACAAGCAGTATCGACTACTTCTAGACCTGCTGGAAGAATA
CTGGACCTACCCTGAAAACACAATTAATATCCACCAAATTGCGCAGTCAC
GAGGAATAGAACTCGGGCTCTTCTAATCCTTTCTTCGGGCATCAACGTCC
TTCACTCCACGACCGTCCAAGATGGTGAAATGCCACTCAAAGTACGGCTA
CCAGGACTTTGTCAACAATCGGAGGCTCTCTATCAAATATGCATCACACT
ACAGGTTTCTATACGGTTAGACTTGAAGTCTCAATTCTTCGAGTATTTTG
ACGCGGCCTTGAACAAGTTCCGTAGCGAGCTGGCTCAGAGCGAAGCCTAC
TTAGAGGATGGTACACTAACTGCTGGATTGCTGTTATGTACTATTGGAAA
TTACAACTTGGCGCGTTGCTTTCCGAACCTTGGAATGCGAATCATGATGC
GGAGGTGTTCAGTGACTCTGGACCTGCAAAGCCCGCCGGCGCAAGTGTGA
TCGTGCTCGCCCGACGTGTCAGGTTTGTGCTGAACGCGGAGTGGCATGTG
AGGGTTATGATGTGCGTCTCCGCTGGGGAACCGGAATTGCCTCGCGAGGG
CGATTTACCGGCGCCAATGCGCCAGCCGAGTCGTCGATTCCACCGAGGCT
GCAGGGACGACAGAGGGATCTGATTCGGGAGAGGAGGCGGCAGTTGCAGA
TAGCTGATCAAGTGTGCGAACGTTCTCCTGGATCTGGGACCCTAGTAGAG
GGAACTGAAGATGTCGACCCCCGGTCGCCGAACCCACCATGGATG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008222-T1.utr3p1 | KJC3_008222-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:1309645..1311372 - |
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