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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:1557289..1561433+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008307-T1 ID=KJC3_008307-T1|Name=KJC3_008307-T1|organism=Aspergillus niger KJC3|type=mRNA|length=4145bp|location=Sequence derived from alignment at ch6:1557289..1561433+ (Aspergillus niger KJC3)
CCCCCGTTGCGGTCCCTTCAGATTGCAAGTTCGTAGTGTCTTTTTTTCTT
TTACGCTTTCCCGGATCCCCCTTCTAAACTTGGTTGCCTCAGGATGGGTC
TGGGCCGATGCACAACTCCATATTGGATTGGATGGACCAAGGAGATTCAA
CAGCGAGACCCTGAGGTGGCTGTGGTAGCTATCATCCATCTTTAGACTCC
CTGGATTCTTGCGTAATACTTGCCATCGCTTTTCTCGACAAGTTCTTTTC
CGATTGCGTCTGGGGACCCGAGGTTCTTGTTTTATAACAGACGGACATGC
ACTGCGGGATAACCTTTTCGGCTTGCTCCAATCCCTCCGCCGTGGTCCCT
TTCTCGGCTTGCCTGGCGACTATTAACCTTCCCAGTTTACTTTACTTTAC
ACTTACCTATTATTCCTATTCCCTACTAACTGAACTGAACTGAATTATCT
TTTCCGTCACGCCTTTTTAAACCTTCCCCCTTCTGGTCGGTGTCTTTTTG
GGAGGCCCGACCACCTTTCGCTCGCTACCCTCTTCTCTTCTTCCTCTCTT
TTCTCTGCTTTCATGACATGCCATATTTTTCCTAATTAACCCTCTCCCAT
GGACGAGGGTTCCGATTCTAAAGCCCCTCGACGGAAGAGGGTGTCGAGAG
CCTGTGATCGCTGTCGAAGTAAAAAGGTCAGTGAGACACAATCAATTAAT
ACCTTCTATTTTGGCTTCTCTCTGCTTCTTCCTTCTCTCCACTCTTTTAT
AGATGTCCCCTTCCCTTTCTCCATCTCCATTTTTTCCTCTTGCTTTTAGC
CCGATCGGTGCAATACAACCCCGAACTGCAGGTGATTTTTCGTTTTGTAC
TCGGTAATGCTCGGGGCGGCGTTCTTGCGTCACGTCACGTACTTGCCCGT
TTTCGGTGCTTTTTATCTCCTCGGAGCTACAGCTCAGCTGTCTACCTTCT
CAATTGGCGATCTGCTACTTCTTTCCTACTTCCTTTACCCCCATCCTGGA
TCTGCTTGTCCTGCAGTCTCTATCTAGTTCTCCACCATGTTTCTGATTTC
CACCCTCCATACTGACAATGATCTCCCGCTTGTAGGACAAGTGCGATGGA
TTACGTCCCGCTTGTTCGGCCTGCCAGGCTTCAGGCCAGACCTGCTCATA
TGATCCCCATGCAAAGAAGCGCGGGCTGCCAGAGGGCTATGTTCGTGGTT
TGGAGAAGCTCTGGGCCTTGTCGATCTGCAATATCGAGGGTTTCGAAGAC
ACAATGCTAACTCTGCTGGGAACCACTGCCGAATCAGCTGGTCGGAGACA
AAAGCTCATGTCTCTATGGACTGATGATGGCGCGTCAGAGACACTGCATG
AATCTTGGAAAACCAGTCGCCTATATGGTGCGCTCGAGAAGATGCTTTCT
AACTCTGAACCAGTTACTGAGAGCTCAGGAAAGCGCTCCCGGGAGGACCA
AGACGACGGCACCGGAAGTGAATGGGGTTTTCGCATTGACCGTAGCTCGA
CTCCTCTCGCTCATGATGCTCCGCGTGTTGTTGAGCCTTCCATCTCCCCC
CGTGCCAAAAGGCCTCGGCTGGCCGCTCCTACCGACAGCAGGATCCCGTC
GTATACCGCTAGCGCTACGAATGCCCTACAATTACCCCCGCAGACCTCGC
AACTGTTGGACGTCTATTTCGCAGTCACTCACTCATGGTTCCCAATCGTC
GCAAAACATAACATTCTACGAGCGTCGTACCTGTATGCAAGCGCGCCGTT
ATCCGTCGCAAAAATGGCCCCAGGTTCGGGCGACCACGCCGCATTGTGGG
CCTTGCTCAGTTATACCATTTCTCAATCTCGGGTTAACCCGCAGGACGGG
GCGTTGGAAGCGCTTTCGAAGACCAAGGAGTATTACTCGGTAGCTCGCAG
CTTGATCCCTTCTGAAACGGAGCGGTTCGAGCTTGGACATGTGCAGGCAC
TGTTGCTGCTGACGTTGGTGAACATCGGCCTGGAGGACTGGACCGCTGCC
TGGCTGCTGAGTGGTCAGGCTGTGCGCATGGCCATTTCTATGGATCTTGG
AGCCTTTATGGACGTTCGACGATCGGACGAGTTGAGGCAAGGAAAGGCGG
TTTTTCTTGGCTGTTTCGTGATCGACTCATTGCTTTCGTTCCGTTTGTCG
AGGCGACCGTGCATGCATCCTCGTGATCTCACCATGGTCGGCCTGTTGGA
AGAAGATGGCTTGGAAGAGTGGAATTCGTGGGCGGACGTCTTGCCACCCA
CGGGAGCTGGACAGGGGAAGAGCCCCCCTCGTCGGGGTCCGCTGCTCGCT
TTAAGCTGCTTCAATCGACTGGTCGAGTTAGCCGGTGTGCTAAATAAGAT
TGCTCGCGATTCCACGGCCGGACCAAACGCACCCTTATTTGCACAACAAC
TGGTCATGGAGCTCAAGCAATGGGATGATCGTCTCCCGCTCGGATGTCGC
TTGATTGGCCCGGAAAGTATCTATCCGGAACGACATTCGGCGTTACTCCC
ACACCAGAGCTACCTTGGCCTGACATATGTGGCGACGCTTCTATGGCTTT
ATCTGCGCATTGCGCCCCAGGAGCTCGGGTTGCACCGCTCCCAACGGCCA
GCTATCGAAGGAGCCAAGAAGCTCCTTTATAGAGCTCTTCCGATGGTGTC
CCAGCACCTTGATAACTTCCAGGTTTGCGGTTTGCCGCCCATATTCGAGC
TTTCTTTACGCACTATCGCCGAACAAGCGTTCACTCTGCGCAATAAGATT
GAATCCGACATGTTCCCTTTCGGACGATGGACTGAAGCGCTCCTCCAGCG
AACCACGGAGCTTAGTTCAACTTGGCCAGTGTATCGTTCATTGTCTGCTT
CGATCGATCACTGGTACCGTTCTAAGGATCTTCCCGGAAACCTTCCTCTA
TCCTATCAGCCCGCAGAGGCAGGATCAGCACCCGGAATGGCTAGCGGTAT
GACCAGTACTGCACTACCCCCTGAGTCTATAGCAACATCGGCGGCAGGGT
ATCCCAGCATAATGAGAGAGCCTTCGATGAACCCTCACATGAGAAGGGCT
GCACCTGGAATGGGGGATTCCGATTATACATCCGCTATCATGGGCATCAC
TATCCCTGTAGACGGACAGTACATGACGCCAAAAGATCCCACGGTGGAGA
ATCCTGAGCTATCTATGATGGACGTATCCTTCCAACAACCCTTGGACGGA
CGGGCGGCACACATGGACAAGTCCGAGCCGACTGCTGCTTTGAATGCAGC
ATTACCGCGGGGCCCACGCCCCCATCCGTCCACACCCGACTCTGGCGTGT
CGAGTTCGATGATGTCGGTCACAGGCCCGGGTGTTATACACGAACGTTCT
GTACCTTCGGGGGATAGGGGCTCGGATACGACAGAGCGTATCGGGTCGAC
AGGCGACATTGACGCCATCTTCAAGGATCTTGCATACCTCGACACCACAG
AGTGGGCTAACAATCGCGAGGCTGCGCTGAAGGATTTCGGGTTTATTGAC
GAGAGTACGTTCCAGGCTTTCTGCCATGACCCAGACCGACTCGCTGGGAC
TCAGCCGTTAGTGCATCCTCCCTCAATTGCCGATATTTGGCCGCCACCGG
GCTTTTTCCCGGAGACGTTCCGTGATACTACGGAAGATGTGATGGAGGGT
TGAGTAGCCGTTTTCTCTTTTATTTACATCTTGCTTTTAACCAAGCAGAG
GTCAAGGAACCTCAACAGGGGTTTATCCCTACTTCTTATACTTATGGGAA
CCCTTTCTGAATCCCTGTTTTCTGCTATGTATGGTGGTGCTATGCAGTCA
CTCTGCAACGCACGCGTCGCCCGTGTTTCCGTCCCTCTTGTTCCTTGTTG
ATGATACCCAATGTAAGTACACATTACAAATAAGATCGATATCGACCAGT
AAATTTCCAATCATGATGCTGATACTCCTCGTTACAGTCCAGAAAACCTC
GAATGCAAAAGGGAGTTAGGTTTATAGGTATCTAGGAGTTGGTTATTGCT
ATTGGTGCATGCATATACATCGTCGCAAACCCTGATATTGGAGGTCTGTG
GCTCCTGAGCCCACAAGTACAATACAATGGTCTCATTTAAACATCGTTCA
AATTTCTCCACCACCCCTGAATATACTGAATCTCCAAGATGAGCC back to topCoding sequence (CDS) from alignment at ch6:1557289..1561433+ >KJC3_008307-T1 ID=KJC3_008307-T1|Name=KJC3_008307-T1|organism=Aspergillus niger KJC3|type=CDS|length=5292bp|location=Sequence derived from alignment at ch6:1557289..1561433+ (Aspergillus niger KJC3)
ATGGACGAGGGTTCCGATTCTAAAGCCCCTCGACGGAAGAGGGTGTCGAG
AGCCTGTGATCGCTGTCGAAGTAAAAAGGACAAGTGCGATGGATTACGTC
CCGCTTGTTCGGCCTGCCAGGCTTCAGGCCAGACCTGCTCATATGATCCC
CATGCAAAGAAGCGCGGGCTGCCAGAGGGCTATGTTCGTGGTTTGGAGAA
GCTCTGGGCCTTGTCGATCTGCAATATCGAGGGTTTCGAAGACACAATGC
TAACTCTGCTGGGAACCACTGCCGAATCAGCTGGTCGGAGACAAAAGCTC
ATGTCTCTATGGACTGATGATGGCGCGTCAGAGACACTGCATGAATCTTG
GAAAACCAGTCGCCTATATGGTGCGCTCGAGAAGATGCTTTCTAACTCTG
AACCAGTTACTGAGAGCTCAGGAAAGCGCTCCCGGGAGGACCAAGACGAC
GGCACCGGAAGTGAATGGGGTTTTCGCATTGACCGTAGCTCGACTCCTCT
CGCTCATGATGCTCCGCGTGTTGTTGAGCCTTCCATCTCCCCCCGTGCCA
AAAGGCCTCGGCTGGCCGCTCCTACCGACAGCAGGATCCCGTCGTATACC
GCTAGCGCTACGAATGCCCTACAATTACCCCCGCAGACCTCGCAACTGTT
GGACGTCTATTTCGCAGTCACTCACTCATGGTTCCCAATCGTCGCAAAAC
ATAACATTCTACGAGCGTCGTACCTGTATGCAAGCGCGCCGTTATCCGTC
GCAAAAATGGCCCCAGGTTCGGGCGACCACGCCGCATTGTGGGCCTTGCT
CAGTTATACCATTTCTCAATCTCGGGTTAACCCGCAGGACGGGGCGTTGG
AAGCGCTTTCGAAGACCAAGGAGTATTACTCGGTAGCTCGCAGCTTGATC
CCTTCTGAAACGGAGCGGTTCGAGCTTGGACATGTGCAGGCACTGTTGCT
GCTGACGTTGGTGAACATCGGCCTGGAGGACTGGACCGCTGCCTGGCTGC
TGAGTGGTCAGGCTGTGCGCATGGCCATTTCTATGGATCTTGGAGCCTTT
ATGGACGTTCGACGATCGGACGAGTTGAGGCAAGGAAAGGCGGTTTTTCT
TGGCTGTTTCGTGATCGACTCATTGCTTTCGTTCCGTTTGTCGAGGCGAC
CGTGCATGCATCCTCGTGATCTCACCATGGTCGGCCTGTTGGAAGAAGAT
GGCTTGGAAGAGTGGAATTCGTGGGCGGACGTCTTGCCACCCACGGGAGC
TGGACAGGGGAAGAGCCCCCCTCGTCGGGGTCCGCTGCTCGCTTTAAGCT
GCTTCAATCGACTGGTCGAGTTAGCCGGTGTGCTAAATAAGATTGCTCGC
GATTCCACGGCCGGACCAAACGCACCCTTATTTGCACAACAACTGGTCAT
GGAGCTCAAGCAATGGGATGATCGTCTCCCGCTCGGATGTCGCTTGATTG
GCCCGGAAAGTATCTATCCGGAACGACATTCGGCGTTACTCCCACACCAG
AGCTACCTTGGCCTGACATATGTGGCGACGCTTCTATGGCTTTATCTGCG
CATTGCGCCCCAGGAGCTCGGGTTGCACCGCTCCCAACGGCCAGCTATCG
AAGGAGCCAAGAAGCTCCTTTATAGAGCTCTTCCGATGGTGTCCCAGCAC
CTTGATAACTTCCAGGTTTGCGGTTTGCCGCCCATATTCGAGCTTTCTTT
ACGCACTATCGCCGAACAAGCGTTCACTCTGCGCAATAAGATTGAATCCG
ACATGTTCCCTTTCGGACGATGGACTGAAGCGCTCCTCCAGCGAACCACG
GAGCTTAGTTCAACTTGGCCAGTGTATCGTTCATTGTCTGCTTCGATCGA
TCACTGGTACCGTTCTAAGGATCTTCCCGGAAACCTTCCTCTATCCTATC
AGCCCGCAGAGGCAGGATCAGCACCCGGAATGGCTAGCGGTATGACCAGT
ACTGCACTACCCCCTGAGTCTATAGCAACATCGGCGGCAGGGTATCCCAG
CATAATGAGAGAGCCTTCGATGAACCCTCACATGAGAAGGGCTGCACCTG
GAATGGGGGATTCCGATTATACATCCGCTATCATGGGCATCACTATCCCT
GTAGACGGACAGTACATGACGCCAAAAGATCCCACGGTGGAGAATCCTGA
GCTATCTATGATGGACGTATCCTTCCAACAACCCTTGGACGGACGGGCGG
CACACATGGACAAGTCCGAGCCGACTGCTGCTTTGAATGCAGCATTACCG
CGGGGCCCACGCCCCCATCCGTCCACACCCGACTCTGGCGTGTCGAGTTC
GATGATGTCGGTCACAGGCCCGGGTGTTATACACGAACGTTCTGTACCTT
CGGGGGATAGGGGCTCGGATACGACAGAGCGTATCGGGTCGACAGGCGAC
ATTGACGCCATCTTCAAGGATCTTGCATACCTCGACACCACAGAGTGGGC
TAACAATCGCGAGGCTGCGCTGAAGGATTTCGGGTTTATTGACGAGAGTA
CGTTCCAGGCTTTCTGCCATGACCCAGACCGACTCGCTGGGACTCAGCCG
TTAGTGCATCCTCCCTCAATTGCCGATATTTGGCCGCCACCGGGCTTTTT
CCCGGAGACGTTCCGTGATACTACGGAAGATGTGATGGAGGGTTGAATGG
ACGAGGGTTCCGATTCTAAAGCCCCTCGACGGAAGAGGGTGTCGAGAGCC
TGTGATCGCTGTCGAAGTAAAAAGGACAAGTGCGATGGATTACGTCCCGC
TTGTTCGGCCTGCCAGGCTTCAGGCCAGACCTGCTCATATGATCCCCATG
CAAAGAAGCGCGGGCTGCCAGAGGGCTATGTTCGTGGTTTGGAGAAGCTC
TGGGCCTTGTCGATCTGCAATATCGAGGGTTTCGAAGACACAATGCTAAC
TCTGCTGGGAACCACTGCCGAATCAGCTGGTCGGAGACAAAAGCTCATGT
CTCTATGGACTGATGATGGCGCGTCAGAGACACTGCATGAATCTTGGAAA
ACCAGTCGCCTATATGGTGCGCTCGAGAAGATGCTTTCTAACTCTGAACC
AGTTACTGAGAGCTCAGGAAAGCGCTCCCGGGAGGACCAAGACGACGGCA
CCGGAAGTGAATGGGGTTTTCGCATTGACCGTAGCTCGACTCCTCTCGCT
CATGATGCTCCGCGTGTTGTTGAGCCTTCCATCTCCCCCCGTGCCAAAAG
GCCTCGGCTGGCCGCTCCTACCGACAGCAGGATCCCGTCGTATACCGCTA
GCGCTACGAATGCCCTACAATTACCCCCGCAGACCTCGCAACTGTTGGAC
GTCTATTTCGCAGTCACTCACTCATGGTTCCCAATCGTCGCAAAACATAA
CATTCTACGAGCGTCGTACCTGTATGCAAGCGCGCCGTTATCCGTCGCAA
AAATGGCCCCAGGTTCGGGCGACCACGCCGCATTGTGGGCCTTGCTCAGT
TATACCATTTCTCAATCTCGGGTTAACCCGCAGGACGGGGCGTTGGAAGC
GCTTTCGAAGACCAAGGAGTATTACTCGGTAGCTCGCAGCTTGATCCCTT
CTGAAACGGAGCGGTTCGAGCTTGGACATGTGCAGGCACTGTTGCTGCTG
ACGTTGGTGAACATCGGCCTGGAGGACTGGACCGCTGCCTGGCTGCTGAG
TGGTCAGGCTGTGCGCATGGCCATTTCTATGGATCTTGGAGCCTTTATGG
ACGTTCGACGATCGGACGAGTTGAGGCAAGGAAAGGCGGTTTTTCTTGGC
TGTTTCGTGATCGACTCATTGCTTTCGTTCCGTTTGTCGAGGCGACCGTG
CATGCATCCTCGTGATCTCACCATGGTCGGCCTGTTGGAAGAAGATGGCT
TGGAAGAGTGGAATTCGTGGGCGGACGTCTTGCCACCCACGGGAGCTGGA
CAGGGGAAGAGCCCCCCTCGTCGGGGTCCGCTGCTCGCTTTAAGCTGCTT
CAATCGACTGGTCGAGTTAGCCGGTGTGCTAAATAAGATTGCTCGCGATT
CCACGGCCGGACCAAACGCACCCTTATTTGCACAACAACTGGTCATGGAG
CTCAAGCAATGGGATGATCGTCTCCCGCTCGGATGTCGCTTGATTGGCCC
GGAAAGTATCTATCCGGAACGACATTCGGCGTTACTCCCACACCAGAGCT
ACCTTGGCCTGACATATGTGGCGACGCTTCTATGGCTTTATCTGCGCATT
GCGCCCCAGGAGCTCGGGTTGCACCGCTCCCAACGGCCAGCTATCGAAGG
AGCCAAGAAGCTCCTTTATAGAGCTCTTCCGATGGTGTCCCAGCACCTTG
ATAACTTCCAGGTTTGCGGTTTGCCGCCCATATTCGAGCTTTCTTTACGC
ACTATCGCCGAACAAGCGTTCACTCTGCGCAATAAGATTGAATCCGACAT
GTTCCCTTTCGGACGATGGACTGAAGCGCTCCTCCAGCGAACCACGGAGC
TTAGTTCAACTTGGCCAGTGTATCGTTCATTGTCTGCTTCGATCGATCAC
TGGTACCGTTCTAAGGATCTTCCCGGAAACCTTCCTCTATCCTATCAGCC
CGCAGAGGCAGGATCAGCACCCGGAATGGCTAGCGGTATGACCAGTACTG
CACTACCCCCTGAGTCTATAGCAACATCGGCGGCAGGGTATCCCAGCATA
ATGAGAGAGCCTTCGATGAACCCTCACATGAGAAGGGCTGCACCTGGAAT
GGGGGATTCCGATTATACATCCGCTATCATGGGCATCACTATCCCTGTAG
ACGGACAGTACATGACGCCAAAAGATCCCACGGTGGAGAATCCTGAGCTA
TCTATGATGGACGTATCCTTCCAACAACCCTTGGACGGACGGGCGGCACA
CATGGACAAGTCCGAGCCGACTGCTGCTTTGAATGCAGCATTACCGCGGG
GCCCACGCCCCCATCCGTCCACACCCGACTCTGGCGTGTCGAGTTCGATG
ATGTCGGTCACAGGCCCGGGTGTTATACACGAACGTTCTGTACCTTCGGG
GGATAGGGGCTCGGATACGACAGAGCGTATCGGGTCGACAGGCGACATTG
ACGCCATCTTCAAGGATCTTGCATACCTCGACACCACAGAGTGGGCTAAC
AATCGCGAGGCTGCGCTGAAGGATTTCGGGTTTATTGACGAGAGTACGTT
CCAGGCTTTCTGCCATGACCCAGACCGACTCGCTGGGACTCAGCCGTTAG
TGCATCCTCCCTCAATTGCCGATATTTGGCCGCCACCGGGCTTTTTCCCG
GAGACGTTCCGTGATACTACGGAAGATGTGATGGAGGGTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
| GO:0006351 | transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0003677 | DNA binding |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008307-T1.utr5p1 | KJC3_008307-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | InterPro:IPR007219 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF04082 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:1557289..1561433 + |
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