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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:1570789..1572030+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008309-T1 ID=KJC3_008309-T1|Name=KJC3_008309-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1242bp|location=Sequence derived from alignment at ch6:1570789..1572030+ (Aspergillus niger KJC3)
GGCGGTCGACAGCGGCGGCGGGAGGGGCCTACCTAATACCGCGCGAACGA
GATTTTGTGTCCAGATAGATCGATTCATAGTATCTTGGATTACTACACCT
CATAGCGTTATCCCCGGAACACAGTCCTAAAAAGGTCCATTCTTATTTTT
CTAAGTTCATCACAATGGCCGAAGTCGCCCAACCGGTTCCTGCTGAGTCG
CAGGCCAAGCATGTTGTTTACTGTGGAGGTACGTCGTCTCTTCTCGTCTC
TGATATCGCTTTTGAAAGCGATGTTTTCTGAGGGAATTAAAATTTAACTG
ATCGTCTGATGTGAACAGTTTGCACATTGCCTCCGGAGGTACGCTTACAT
ATATACATACGCCCTATGCACTCGATCTTAAGGCCCATCTTCATCTGCGA
GGACGAAGCCACTCTGCTCCTTCCAGCAATATATTATTTAGACCCTCCAA
AGAGGGCATATGGCAGCCAGCTAACCTCGAATCCGGAATCGTCTAGTACT
GTGAATTCGGTGGCACGGCCAAGAAATGCGAGGAATGGTTGAAGGACGCT
CATCCGGACATGTACCAGTCGTTATATTCTGAGGGTTCGTTGTTATTTCC
CTCTTCTTCTCGGATTTCCCGGGTGTTCAGCTCAGCTCGCTAACTTACGG
TCTATTTGTCTTATGTAGAGGCCCTCAACTCTAATCTTGCTACATTGTCG
GTATCGGCTCGGGAGCGCGCAGCTAAGGATGCGGCGAAGAAGGAGGCTAA
GGCTGCTGCGGCTGAGGCGCGCGATGCTGAGCGGAAGGCGGCGTCTAAGG
TACAGATTAAGCGGGTTGAGCGGAACAAGCGGAAACATGTTACTGTTATC
ACGGGGTTGGATATATATGGGTTGGAGAATAAGAAGATCGCTAAGGATCT
GGGCAAGAAGTTCGCTACTGGTTCTTCAATGACTAGGTCTGCGGGTGGAA
CTGAGGAAATTACCGTGCAGGGTGATGTAAGTGATGATGTTAAGGAATGG
CTGCTCGAGGTGTACGGGAAGGAGATCCCGGAGGCCAATATTGAGCTCAT
TGAGGATAAGAAGAAGAAGAAGGCGACTGAAGCGCCCTGAGGTATTATCA
ATGGGCCGATGAATGCATAATGTACAAAAATGCTATGCTTGGGGGACAGT
CTGGGTATCATGACATTATTTATGGTTTACACATTAGATCAACGGAGATA
CGACAGTCTCGAGGCTGGCCTTGAAAATTGTCCTGAGTCTCG back to topCoding sequence (CDS) from alignment at ch6:1570789..1572030+ >KJC3_008309-T1 ID=KJC3_008309-T1|Name=KJC3_008309-T1|organism=Aspergillus niger KJC3|type=CDS|length=2376bp|location=Sequence derived from alignment at ch6:1570789..1572030+ (Aspergillus niger KJC3)
ATGGCCGAAGTCGCCCAACCGGTTCCTGCTGAGTCGCAGGCCAAGCATGT
TGTTTACTGTGGAGTTTGCACATTGCCTCCGGAGTACTGTGAATTCGGTG
GCACGGCCAAGAAATGCGAGGAATGGTTGAAGGACGCTCATCCGGACATG
TACCAGTCGTTATATTCTGAGGAGGCCCTCAACTCTAATCTTGCTACATT
GTCGGTATCGGCTCGGGAGCGCGCAGCTAAGGATGCGGCGAAGAAGGAGG
CTAAGGCTGCTGCGGCTGAGGCGCGCGATGCTGAGCGGAAGGCGGCGTCT
AAGGTACAGATTAAGCGGGTTGAGCGGAACAAGCGGAAACATGTTACTGT
TATCACGGGGTTGGATATATATGGGTTGGAGAATAAGAAGATCGCTAAGG
ATCTGGGCAAGAAGTTCGCTACTGGTTCTTCAATGACTAGGTCTGCGGGT
GGAACTGAGGAAATTACCGTGCAGGGTGATGTAAGTGATGATGTTAAGGA
ATGGCTGCTCGAGGTGTACGGGAAGGAGATCCCGGAGGCCAATATTGAGC
TCATTGAGGATAAGAAGAAGAAGAAGGCGACTGAAGCGCCCTGAATGGCC
GAAGTCGCCCAACCGGTTCCTGCTGAGTCGCAGGCCAAGCATGTTGTTTA
CTGTGGAGTTTGCACATTGCCTCCGGAGTACTGTGAATTCGGTGGCACGG
CCAAGAAATGCGAGGAATGGTTGAAGGACGCTCATCCGGACATGTACCAG
TCGTTATATTCTGAGGAGGCCCTCAACTCTAATCTTGCTACATTGTCGGT
ATCGGCTCGGGAGCGCGCAGCTAAGGATGCGGCGAAGAAGGAGGCTAAGG
CTGCTGCGGCTGAGGCGCGCGATGCTGAGCGGAAGGCGGCGTCTAAGGTA
CAGATTAAGCGGGTTGAGCGGAACAAGCGGAAACATGTTACTGTTATCAC
GGGGTTGGATATATATGGGTTGGAGAATAAGAAGATCGCTAAGGATCTGG
GCAAGAAGTTCGCTACTGGTTCTTCAATGACTAGGTCTGCGGGTGGAACT
GAGGAAATTACCGTGCAGGGTGATGTAAGTGATGATGTTAAGGAATGGCT
GCTCGAGGTGTACGGGAAGGAGATCCCGGAGGCCAATATTGAGCTCATTG
AGGATAAGAAGAAGAAGAAGGCGACTGAAGCGCCCTGAATGGCCGAAGTC
GCCCAACCGGTTCCTGCTGAGTCGCAGGCCAAGCATGTTGTTTACTGTGG
AGTTTGCACATTGCCTCCGGAGTACTGTGAATTCGGTGGCACGGCCAAGA
AATGCGAGGAATGGTTGAAGGACGCTCATCCGGACATGTACCAGTCGTTA
TATTCTGAGGAGGCCCTCAACTCTAATCTTGCTACATTGTCGGTATCGGC
TCGGGAGCGCGCAGCTAAGGATGCGGCGAAGAAGGAGGCTAAGGCTGCTG
CGGCTGAGGCGCGCGATGCTGAGCGGAAGGCGGCGTCTAAGGTACAGATT
AAGCGGGTTGAGCGGAACAAGCGGAAACATGTTACTGTTATCACGGGGTT
GGATATATATGGGTTGGAGAATAAGAAGATCGCTAAGGATCTGGGCAAGA
AGTTCGCTACTGGTTCTTCAATGACTAGGTCTGCGGGTGGAACTGAGGAA
ATTACCGTGCAGGGTGATGTAAGTGATGATGTTAAGGAATGGCTGCTCGA
GGTGTACGGGAAGGAGATCCCGGAGGCCAATATTGAGCTCATTGAGGATA
AGAAGAAGAAGAAGGCGACTGAAGCGCCCTGAATGGCCGAAGTCGCCCAA
CCGGTTCCTGCTGAGTCGCAGGCCAAGCATGTTGTTTACTGTGGAGTTTG
CACATTGCCTCCGGAGTACTGTGAATTCGGTGGCACGGCCAAGAAATGCG
AGGAATGGTTGAAGGACGCTCATCCGGACATGTACCAGTCGTTATATTCT
GAGGAGGCCCTCAACTCTAATCTTGCTACATTGTCGGTATCGGCTCGGGA
GCGCGCAGCTAAGGATGCGGCGAAGAAGGAGGCTAAGGCTGCTGCGGCTG
AGGCGCGCGATGCTGAGCGGAAGGCGGCGTCTAAGGTACAGATTAAGCGG
GTTGAGCGGAACAAGCGGAAACATGTTACTGTTATCACGGGGTTGGATAT
ATATGGGTTGGAGAATAAGAAGATCGCTAAGGATCTGGGCAAGAAGTTCG
CTACTGGTTCTTCAATGACTAGGTCTGCGGGTGGAACTGAGGAAATTACC
GTGCAGGGTGATGTAAGTGATGATGTTAAGGAATGGCTGCTCGAGGTGTA
CGGGAAGGAGATCCCGGAGGCCAATATTGAGCTCATTGAGGATAAGAAGA
AGAAGAAGGCGACTGAAGCGCCCTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006413 | translational initiation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003743 | translation initiation factor activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008309-T1.utr5p1 | KJC3_008309-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008309-T1.utr3p1 | KJC3_008309-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG092652NQ |
| DBxref | InterPro:IPR036877 |
| DBxref | InterPro:IPR001950 |
| DBxref | PFAM:PF01253 |
| Product | Translation machinery-associated protein 22 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:1570789..1572030 + |
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