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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:1595034..1597753+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008320-T1 ID=KJC3_008320-T1|Name=KJC3_008320-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2720bp|location=Sequence derived from alignment at ch6:1595034..1597753+ (Aspergillus niger KJC3)
CTTGGCAACCCACCCTCCTTATTCTCTCTCAACCGATAGAATGTGCTGAT
TCCTTTGAGCCTCGTTGACTGAAGTCCTTACAGTGCCATGCCACTTGGAA
TCTACAGCTTGTATTGAAATTGGTCAGAAAGCGGGTACGGCTACTGATTG
GCATACGCCCGCTTTGACAATTGCCCGTGCTCTATTGCGACCAGGCGACA
TTACTACTACTTCCCACCATGGAAACCAGCATTTCTGAGCTAGTTGAGAG
ACTAGGAAGTGACGAAGATGCGGTGCGCAAAATGGCAGTTTTCAAACTTC
AGGGGAGCATTGGGGATCCCTCCTTTGCCGATAATTTCATCGCAGAAGGT
GGACTCACTAGGTTACGCTACTTGACTCTACATGCGAGTGGTAACACCTT
GGCATATAGCCTCACAAGCTTCGCCAGAATCCTAGAAGTTGACAAAGGCT
GGGATCTAGTAGATCAAGATATGGTTGAAAGAGTAGGTAACATGAACAAG
CTCTCCGTCTCTTCTATAACATACTCCCGCAAACCACCTTATATAGTAAC
ATACTGATATATTGTACCGTCTTCTCTTTCCAGGTTGTTGAACTTATAGT
GACACACCCATTGGTCAACATCCTAAGGGGTGCAATGTCTATATTAGTAT
CCATAGTGTCACATCCTTACTCGGGTAATCACTTATCACAAGATGGAAAT
TTTGGGTTTCGTGCATTGAAGCCCGCAATTGCCATTTACCCGCAGTTTTT
GGAAATGCTTGTCAATAGACTTTCGTCTGCAGACCATGCCCTCTGTGCAA
ATGCACTTCAGTTGATCAATTCGCTCATGCGCGACTCTATCACGAACGAC
GCAGATACGGAATGGCCAAAGTTTATTCAGAAGCTACAAGATCTCGGTGT
GATTAGAGCAGTCTACTCCCTCATGCAAGGTAGTGCCCTGCAGGATCACG
TGCACCCATTGATCGAATTCCAGTCTCTTACCAAAGTTCTTCTGAGGAAA
TGGAGAGAGATATATCTGGATCTGGAGAGACCGGAGCACAGGAGAGCCTT
GAAAGGGATCTATTTGGCTAGCTCACATGAGCGGGGTCAAGAGAAGGGAG
TCGAGAATGGTGATGAGATGCGACAGTCTAAGAAACATAGTTCTGAGAAA
TGGAGACGTCTTGGTTTCGAGACGGAAAGTCCTTCGACGCAGTTTGAGGA
TACCGGGTTCTTGGGAATGATGGATTTGGCAGACTATGTCAGAAACCATC
AAGATGAGTTCCAAAAAATGCTCCTGGAGCAGTCCACGAAGCCTCCTCAG
CAGCGATGTCCCATTGCTCGTGCCTCACTGTCTGTCACCTCGATATTGTA
CCAGCATTTTGAGGTGGACAAATCGGAGATGGATGATTCCAAGGGCTATC
TTCTACTAGAGTCTCGCTCTAACCTTGATAAGGTTTTTGAGCCTCTGCTG
TTGCATTGGACCAGATTGCATGTAGCGGGGTTACATGCTTTCTTTCGTCT
GTGGAAGGCTACCGGAGCGGAAGTCGAAGACTACGGAAAGATCGTTGAGC
TGATCCGGATCTTAATCGAGTCTGTCGTTGGTGGGGCTCCTAGGACAAAG
GATGTGCAAGAAGTGGAAGAAGAACTAGCGAACTTTGAGTATGGTCGGCT
CCGCGAACTGCAAATGGAGTTGTTGGAGCTCGCGTATGAAGATGCCTGGG
GCCAACACCTGCAGCAGATGCGCGAAGAATTGTATCACGAAGCACTTCAA
TTCGTTAAAGAACAGAGAATCCGCTGCCTGTTGCACGGTGCATGGTTCCT
CAACGAGGGCCCTATTAGTTCAGATGCGGGAACCGAGCAACACTCATGGA
AATACGCACAACTTTCGCACAACAGGAGATTCTTACACTTTGGTGATTTT
AATGCCATTCTTGAGAGGCGCCCGGAGCTCGATACTTTACCCGAGAAGAG
TAAGTTTGCTTCTTTGATGTTGTGCGTGGTCTGTTCTGTCCTTGATTTCA
AGCTGACTGCGCTTTACACCTTCAGTCGACCTTTCATTGGTATCTTCAGT
GGTCTCCAATGTCTCTGCTTCCTCCAAAGATCAGTCGACGGCGCCTGCAA
AGGACATGCCCCATGCTGTGTCTTATACTAAGATCACCGTGCACGGATAC
TCGCAGCCTGTACACGAGACTGGAGATATCCACAAAAGTAATGGCCATCG
CCGAACCTCGAGCAGATCAGCGCAAGGTGAATCTGCGCTGTTGAGTTTCT
GTCCGCAATCCACTAGTGTCGCATCCGAATGGCTTGATGGGTTGCTTATG
CTTCTCAACCAGCAGCCTATAACCGCGGAGACAAACAAACTTATAAGCTT
GGTTAGTGATTACGGTCTCAAAATTCGTTTGTTGAATGTTCGCTTCGACG
ATGTAGCCTTCGCGGGTGAAGCACCCCAAGTTCCCACGCGAGATGGCCTT
GATGACAATTACTACTATGACGTCTTTGGTGGCTCATAAAAACGAGCTCC
TCCTCGACACTGACACTGTTACCTGATTTTCCAAATGATTACGAGACATC
CCCATATATGTGGGAGGTGTTTTGACTGACGATAATGTGGATGTATGGGA
CAGCAGCGCAGGGGCTACCGGCTCAGTTGATGTCATATTAGTAGTACTCT
TCGGCTAGATTAGCTGCTAGAACACTGCATCATATACAGTGGAAGTAAAA
ATATACCCTGTAGATATGGT back to topCoding sequence (CDS) from alignment at ch6:1595034..1597753+ >KJC3_008320-T1 ID=KJC3_008320-T1|Name=KJC3_008320-T1|organism=Aspergillus niger KJC3|type=CDS|length=6282bp|location=Sequence derived from alignment at ch6:1595034..1597753+ (Aspergillus niger KJC3)
ATGGAAACCAGCATTTCTGAGCTAGTTGAGAGACTAGGAAGTGACGAAGA
TGCGGTGCGCAAAATGGCAGTTTTCAAACTTCAGGGGAGCATTGGGGATC
CCTCCTTTGCCGATAATTTCATCGCAGAAGGTGGACTCACTAGGTTACGC
TACTTGACTCTACATGCGAGTGGTAACACCTTGGCATATAGCCTCACAAG
CTTCGCCAGAATCCTAGAAGTTGACAAAGGCTGGGATCTAGTAGATCAAG
ATATGGTTGAAAGAGTTGTTGAACTTATAGTGACACACCCATTGGTCAAC
ATCCTAAGGGGTGCAATGTCTATATTAGTATCCATAGTGTCACATCCTTA
CTCGGGTAATCACTTATCACAAGATGGAAATTTTGGGTTTCGTGCATTGA
AGCCCGCAATTGCCATTTACCCGCAGTTTTTGGAAATGCTTGTCAATAGA
CTTTCGTCTGCAGACCATGCCCTCTGTGCAAATGCACTTCAGTTGATCAA
TTCGCTCATGCGCGACTCTATCACGAACGACGCAGATACGGAATGGCCAA
AGTTTATTCAGAAGCTACAAGATCTCGGTGTGATTAGAGCAGTCTACTCC
CTCATGCAAGGTAGTGCCCTGCAGGATCACGTGCACCCATTGATCGAATT
CCAGTCTCTTACCAAAGTTCTTCTGAGGAAATGGAGAGAGATATATCTGG
ATCTGGAGAGACCGGAGCACAGGAGAGCCTTGAAAGGGATCTATTTGGCT
AGCTCACATGAGCGGGGTCAAGAGAAGGGAGTCGAGAATGGTGATGAGAT
GCGACAGTCTAAGAAACATAGTTCTGAGAAATGGAGACGTCTTGGTTTCG
AGACGGAAAGTCCTTCGACGCAGTTTGAGGATACCGGGTTCTTGGGAATG
ATGGATTTGGCAGACTATGTCAGAAACCATCAAGATGAGTTCCAAAAAAT
GCTCCTGGAGCAGTCCACGAAGCCTCCTCAGCAGCGATGTCCCATTGCTC
GTGCCTCACTGTCTGTCACCTCGATATTGTACCAGCATTTTGAGGTGGAC
AAATCGGAGATGGATGATTCCAAGGGCTATCTTCTACTAGAGTCTCGCTC
TAACCTTGATAAGGTTTTTGAGCCTCTGCTGTTGCATTGGACCAGATTGC
ATGTAGCGGGGTTACATGCTTTCTTTCGTCTGTGGAAGGCTACCGGAGCG
GAAGTCGAAGACTACGGAAAGATCGTTGAGCTGATCCGGATCTTAATCGA
GTCTGTCGTTGGTGGGGCTCCTAGGACAAAGGATGTGCAAGAAGTGGAAG
AAGAACTAGCGAACTTTGAGTATGGTCGGCTCCGCGAACTGCAAATGGAG
TTGTTGGAGCTCGCGTATGAAGATGCCTGGGGCCAACACCTGCAGCAGAT
GCGCGAAGAATTGTATCACGAAGCACTTCAATTCGTTAAAGAACAGAGAA
TCCGCTGCCTGTTGCACGGTGCATGGTTCCTCAACGAGGGCCCTATTAGT
TCAGATGCGGGAACCGAGCAACACTCATGGAAATACGCACAACTTTCGCA
CAACAGGAGATTCTTACACTTTGGTGATTTTAATGCCATTCTTGAGAGGC
GCCCGGAGCTCGATACTTTACCCGAGAAGATCGACCTTTCATTGGTATCT
TCAGTGGTCTCCAATGTCTCTGCTTCCTCCAAAGATCAGTCGACGGCGCC
TGCAAAGGACATGCCCCATGCTGTGTCTTATACTAAGATCACCGTGCACG
GATACTCGCAGCCTGTACACGAGACTGGAGATATCCACAAAAGTAATGGC
CATCGCCGAACCTCGAGCAGATCAGCGCAAGGTGAATCTGCGCTGTTGAG
TTTCTGTCCGCAATCCACTAGTGTCGCATCCGAATGGCTTGATGGGTTGC
TTATGCTTCTCAACCAGCAGCCTATAACCGCGGAGACAAACAAACTTATA
AGCTTGGTTAGTGATTACGGTCTCAAAATTCGTTTGTTGAATGTTCGCTT
CGACGATGTAGCCTTCGCGGGTGAAGCACCCCAAGTTCCCACGCGAGATG
GCCTTGATGACAATTACTACTATGACGTCTTTGGTGGCTCATAAATGGAA
ACCAGCATTTCTGAGCTAGTTGAGAGACTAGGAAGTGACGAAGATGCGGT
GCGCAAAATGGCAGTTTTCAAACTTCAGGGGAGCATTGGGGATCCCTCCT
TTGCCGATAATTTCATCGCAGAAGGTGGACTCACTAGGTTACGCTACTTG
ACTCTACATGCGAGTGGTAACACCTTGGCATATAGCCTCACAAGCTTCGC
CAGAATCCTAGAAGTTGACAAAGGCTGGGATCTAGTAGATCAAGATATGG
TTGAAAGAGTTGTTGAACTTATAGTGACACACCCATTGGTCAACATCCTA
AGGGGTGCAATGTCTATATTAGTATCCATAGTGTCACATCCTTACTCGGG
TAATCACTTATCACAAGATGGAAATTTTGGGTTTCGTGCATTGAAGCCCG
CAATTGCCATTTACCCGCAGTTTTTGGAAATGCTTGTCAATAGACTTTCG
TCTGCAGACCATGCCCTCTGTGCAAATGCACTTCAGTTGATCAATTCGCT
CATGCGCGACTCTATCACGAACGACGCAGATACGGAATGGCCAAAGTTTA
TTCAGAAGCTACAAGATCTCGGTGTGATTAGAGCAGTCTACTCCCTCATG
CAAGGTAGTGCCCTGCAGGATCACGTGCACCCATTGATCGAATTCCAGTC
TCTTACCAAAGTTCTTCTGAGGAAATGGAGAGAGATATATCTGGATCTGG
AGAGACCGGAGCACAGGAGAGCCTTGAAAGGGATCTATTTGGCTAGCTCA
CATGAGCGGGGTCAAGAGAAGGGAGTCGAGAATGGTGATGAGATGCGACA
GTCTAAGAAACATAGTTCTGAGAAATGGAGACGTCTTGGTTTCGAGACGG
AAAGTCCTTCGACGCAGTTTGAGGATACCGGGTTCTTGGGAATGATGGAT
TTGGCAGACTATGTCAGAAACCATCAAGATGAGTTCCAAAAAATGCTCCT
GGAGCAGTCCACGAAGCCTCCTCAGCAGCGATGTCCCATTGCTCGTGCCT
CACTGTCTGTCACCTCGATATTGTACCAGCATTTTGAGGTGGACAAATCG
GAGATGGATGATTCCAAGGGCTATCTTCTACTAGAGTCTCGCTCTAACCT
TGATAAGGTTTTTGAGCCTCTGCTGTTGCATTGGACCAGATTGCATGTAG
CGGGGTTACATGCTTTCTTTCGTCTGTGGAAGGCTACCGGAGCGGAAGTC
GAAGACTACGGAAAGATCGTTGAGCTGATCCGGATCTTAATCGAGTCTGT
CGTTGGTGGGGCTCCTAGGACAAAGGATGTGCAAGAAGTGGAAGAAGAAC
TAGCGAACTTTGAGTATGGTCGGCTCCGCGAACTGCAAATGGAGTTGTTG
GAGCTCGCGTATGAAGATGCCTGGGGCCAACACCTGCAGCAGATGCGCGA
AGAATTGTATCACGAAGCACTTCAATTCGTTAAAGAACAGAGAATCCGCT
GCCTGTTGCACGGTGCATGGTTCCTCAACGAGGGCCCTATTAGTTCAGAT
GCGGGAACCGAGCAACACTCATGGAAATACGCACAACTTTCGCACAACAG
GAGATTCTTACACTTTGGTGATTTTAATGCCATTCTTGAGAGGCGCCCGG
AGCTCGATACTTTACCCGAGAAGATCGACCTTTCATTGGTATCTTCAGTG
GTCTCCAATGTCTCTGCTTCCTCCAAAGATCAGTCGACGGCGCCTGCAAA
GGACATGCCCCATGCTGTGTCTTATACTAAGATCACCGTGCACGGATACT
CGCAGCCTGTACACGAGACTGGAGATATCCACAAAAGTAATGGCCATCGC
CGAACCTCGAGCAGATCAGCGCAAGGTGAATCTGCGCTGTTGAGTTTCTG
TCCGCAATCCACTAGTGTCGCATCCGAATGGCTTGATGGGTTGCTTATGC
TTCTCAACCAGCAGCCTATAACCGCGGAGACAAACAAACTTATAAGCTTG
GTTAGTGATTACGGTCTCAAAATTCGTTTGTTGAATGTTCGCTTCGACGA
TGTAGCCTTCGCGGGTGAAGCACCCCAAGTTCCCACGCGAGATGGCCTTG
ATGACAATTACTACTATGACGTCTTTGGTGGCTCATAAATGGAAACCAGC
ATTTCTGAGCTAGTTGAGAGACTAGGAAGTGACGAAGATGCGGTGCGCAA
AATGGCAGTTTTCAAACTTCAGGGGAGCATTGGGGATCCCTCCTTTGCCG
ATAATTTCATCGCAGAAGGTGGACTCACTAGGTTACGCTACTTGACTCTA
CATGCGAGTGGTAACACCTTGGCATATAGCCTCACAAGCTTCGCCAGAAT
CCTAGAAGTTGACAAAGGCTGGGATCTAGTAGATCAAGATATGGTTGAAA
GAGTTGTTGAACTTATAGTGACACACCCATTGGTCAACATCCTAAGGGGT
GCAATGTCTATATTAGTATCCATAGTGTCACATCCTTACTCGGGTAATCA
CTTATCACAAGATGGAAATTTTGGGTTTCGTGCATTGAAGCCCGCAATTG
CCATTTACCCGCAGTTTTTGGAAATGCTTGTCAATAGACTTTCGTCTGCA
GACCATGCCCTCTGTGCAAATGCACTTCAGTTGATCAATTCGCTCATGCG
CGACTCTATCACGAACGACGCAGATACGGAATGGCCAAAGTTTATTCAGA
AGCTACAAGATCTCGGTGTGATTAGAGCAGTCTACTCCCTCATGCAAGGT
AGTGCCCTGCAGGATCACGTGCACCCATTGATCGAATTCCAGTCTCTTAC
CAAAGTTCTTCTGAGGAAATGGAGAGAGATATATCTGGATCTGGAGAGAC
CGGAGCACAGGAGAGCCTTGAAAGGGATCTATTTGGCTAGCTCACATGAG
CGGGGTCAAGAGAAGGGAGTCGAGAATGGTGATGAGATGCGACAGTCTAA
GAAACATAGTTCTGAGAAATGGAGACGTCTTGGTTTCGAGACGGAAAGTC
CTTCGACGCAGTTTGAGGATACCGGGTTCTTGGGAATGATGGATTTGGCA
GACTATGTCAGAAACCATCAAGATGAGTTCCAAAAAATGCTCCTGGAGCA
GTCCACGAAGCCTCCTCAGCAGCGATGTCCCATTGCTCGTGCCTCACTGT
CTGTCACCTCGATATTGTACCAGCATTTTGAGGTGGACAAATCGGAGATG
GATGATTCCAAGGGCTATCTTCTACTAGAGTCTCGCTCTAACCTTGATAA
GGTTTTTGAGCCTCTGCTGTTGCATTGGACCAGATTGCATGTAGCGGGGT
TACATGCTTTCTTTCGTCTGTGGAAGGCTACCGGAGCGGAAGTCGAAGAC
TACGGAAAGATCGTTGAGCTGATCCGGATCTTAATCGAGTCTGTCGTTGG
TGGGGCTCCTAGGACAAAGGATGTGCAAGAAGTGGAAGAAGAACTAGCGA
ACTTTGAGTATGGTCGGCTCCGCGAACTGCAAATGGAGTTGTTGGAGCTC
GCGTATGAAGATGCCTGGGGCCAACACCTGCAGCAGATGCGCGAAGAATT
GTATCACGAAGCACTTCAATTCGTTAAAGAACAGAGAATCCGCTGCCTGT
TGCACGGTGCATGGTTCCTCAACGAGGGCCCTATTAGTTCAGATGCGGGA
ACCGAGCAACACTCATGGAAATACGCACAACTTTCGCACAACAGGAGATT
CTTACACTTTGGTGATTTTAATGCCATTCTTGAGAGGCGCCCGGAGCTCG
ATACTTTACCCGAGAAGATCGACCTTTCATTGGTATCTTCAGTGGTCTCC
AATGTCTCTGCTTCCTCCAAAGATCAGTCGACGGCGCCTGCAAAGGACAT
GCCCCATGCTGTGTCTTATACTAAGATCACCGTGCACGGATACTCGCAGC
CTGTACACGAGACTGGAGATATCCACAAAAGTAATGGCCATCGCCGAACC
TCGAGCAGATCAGCGCAAGGTGAATCTGCGCTGTTGAGTTTCTGTCCGCA
ATCCACTAGTGTCGCATCCGAATGGCTTGATGGGTTGCTTATGCTTCTCA
ACCAGCAGCCTATAACCGCGGAGACAAACAAACTTATAAGCTTGGTTAGT
GATTACGGTCTCAAAATTCGTTTGTTGAATGTTCGCTTCGACGATGTAGC
CTTCGCGGGTGAAGCACCCCAAGTTCCCACGCGAGATGGCCTTGATGACA
ATTACTACTATGACGTCTTTGGTGGCTCATAA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008320-T1.utr5p1 | KJC3_008320-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008320-T1.utr3p1 | KJC3_008320-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR016024 |
| DBxref | InterPro:IPR011989 |
| DBxref | InterPro:IPR001849 |
| DBxref | InterPro:IPR006816 |
| DBxref | InterPro:IPR024574 |
| DBxref | PFAM:PF16457 |
| DBxref | PFAM:PF04727 |
| DBxref | PFAM:PF11841 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:1595034..1597753 + |
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