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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:1782196..1784019- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008352-T1 ID=KJC3_008352-T1|Name=KJC3_008352-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1824bp|location=Sequence derived from alignment at ch6:1782196..1784019- (Aspergillus niger KJC3)
TGATTCTCCTGTTGCGTGTTGATTCGGCCCTCCACCACCGCCTTCTTCCC
CCCCAAGAACCCCCCTAATACTCCCCGGCAGGGCCACCCACGAGCTTACG
TCCCTGTTGACCTTATAGAGTCGATCCCGATACCGAGCAGAAAGTTGATC
AATATGGTATGTCCCCAACTCACCCCAATGGTCCCAGGCGATTTGCCCAT
GACTATTGCTAACGTCCAGGGAACTAGGCTGCTCAAGTAATCTCCAATTC
CGGACACGATGAGATGATTGTACGTGAACCGAGACAGAATCCTCCTACGC
CATCGTGACAATGGCTTCATCCCTTTCTGCCTGGCCCCTGAGACTGACCG
CAGCGCATAGCACGATGCCGGCCTGGACTACTACGGCCGCAGATTGGCAA
CATGTTCATCGGACAAAACGATAAAGATCTTTGAAATCGAAGGAGAGACA
CATCGGTTGATTGAGACATTGAAGGGGTGAGGATCCTGATGCCTGGTCAT
CTTACGCGCCATCGTTTCTAACCTCCGTCCGTGTGTGAGCAGACATGAAG
GAGCTGTGTGGTGTGTGGCTTGGGTACGTCATAATGGCTTTCATTGTCAA
GCTGTCCTATTCAACTATGTATCTGACTCTGGTCTTCTCTAGGCGCACCC
TAAGTTCGGAACTATCCTCGCTTCCTCCTCGTACGATGGAAAGGTGCTCA
TCTGGCGCGAACAACACCAGAACGCCACGTCACCCGTCGCTGGCGGCGCT
TGGACGAAGGTGTTCGACTTCTCTCTACACACCGCTTCAGTGAACATGGT
CTCCTGGGCTCCGCATGAAAGTGGCTGTCTCCTCGCTTGCGCCTCCTCGG
ACGGACATGTTAGCGTTCTTGAGTTCCGTGACAATAGCTGGACTCACCAG
ATCTTCCACGCCCACGGTATGGGCGTGAACTCTATCAGCTGGGCACCTGC
AGCCGCCCCGGGCAGCTTGATCAGCTCCAACCCTGGACCGGGCCAGCAGC
GGAGATTCGTCACTGGTGGAAGCGACAACCTGCTGAAGATCTGGGACTAC
AAGTATGCACCATGAACCGCTTCCCACTGATACTCTGCTTTCAATTGAAC
TAAGCTGACCCTTACACCTCTACAGCCCGGAAACCAAGACCTACAACAAC
ACGCAGACTCTCGAAGGCCACTCCGACTGGGTTCGGGATGTCGCTTGGTC
GCCTAGCGTTCTTTCCAAGTCCTACATCGCCTCTGCCTCTCAAGACAAGA
CAGTCCGGATCTGGACTTCCGATGCGTCAAACCCTGGTCAGTGGACCAGC
CAGCAACTTGAGTTCGACACTGTACTCTGGCGAGTTAGCTGGAGCCCTAG
TGGAAACATTCTTGCTGTGAGCGGTGGCGATAACAAGGTCAGCTTGTGGA
AGGAAAACCTCAAGGGGCAATGGGAGAAGGTAAAGGATATCGAGGAGTAG
GCTTCAGATTTCAAATTTCCTTAACTTTCAAATTTCATATTTCACGTGTG
ATAACGGATAACTTGGGTTTCTGCCATGTATTTCATCCGACCCAGACGTT
ATCAAAAATAAAAAACGAGCTCAAAAACAGGCAAGACCGTCATTGTTTCC
AGAAAATAAACGGACCCTTGTCCAGCGTCTCCAGCAGATCTATCCAACTC
CCGATCATGATATTACCTTCTGGTAAGATAACGCCCTCGTAAACCTGTAC
CAAGTAAAAATCAGACTCAAAGTCCGACGGCGGCCATCCTGTCTCGAAAA
GCCAAGGGTCCTCATCCATAGCGGCCTCTGTGCCATTATGAGCAGGAGGA
ACGGGTAGCTGCTCTTGGTCCCAC back to topCoding sequence (CDS) from alignment at ch6:1782196..1784019- >KJC3_008352-T1 ID=KJC3_008352-T1|Name=KJC3_008352-T1|organism=Aspergillus niger KJC3|type=CDS|length=5562bp|location=Sequence derived from alignment at ch6:1782196..1784019- (Aspergillus niger KJC3)
CCCGGAAACCAAGACCTACAACAACACGCAGACTCTCGAAGGCCACTCCG
ACTGGGTTCGGGATGTCGCTTGGTCGCCTAGCGTTCTTTCCAAGTCCTAC
ATCGCCTCTGCCTCTCAAGACAAGACAGTCCGGATCTGGACTTCCGATGC
GTCAAACCCTGGTCAGTGGACCAGCCAGCAACTTGAGTTCGACACTGTAC
TCTGGCGAGTTAGCTGGAGCCCTAGTGGAAACATTCTTGCTGTGAGCGGT
GGCGATAACAAGGTCAGCTTGTGGAAGGAAAACCTCAAGGGGCAATGGGA
GAAGGTAAAGGATATCGAGGAGTAGGCGCACCCTAAGTTCGGAACTATCC
TCGCTTCCTCCTCGTACGATGGAAAGGTGCTCATCTGGCGCGAACAACAC
CAGAACGCCACGTCACCCGTCGCTGGCGGCGCTTGGACGAAGGTGTTCGA
CTTCTCTCTACACACCGCTTCAGTGAACATGGTCTCCTGGGCTCCGCATG
AAAGTGGCTGTCTCCTCGCTTGCGCCTCCTCGGACGGACATGTTAGCGTT
CTTGAGTTCCGTGACAATAGCTGGACTCACCAGATCTTCCACGCCCACGG
TATGGGCGTGAACTCTATCAGCTGGGCACCTGCAGCCGCCCCGGGCAGCT
TGATCAGCTCCAACCCTGGACCGGGCCAGCAGCGGAGATTCGTCACTGGT
GGAAGCGACAACCTGCTGAAGATCTGGGACTACAAACATGAAGGAGCTGT
GTGGTGTGTGGCTTGGCACGATGCCGGCCTGGACTACTACGGCCGCAGAT
TGGCAACATGTTCATCGGACAAAACGATAAAGATCTTTGAAATCGAAGGA
GAGACACATCGGTTGATTGAGACATTGAAGGGGCTGCTCAAGTAATCTCC
AATTCCGGACACGATGAGATGATTATGCCCGGAAACCAAGACCTACAACA
ACACGCAGACTCTCGAAGGCCACTCCGACTGGGTTCGGGATGTCGCTTGG
TCGCCTAGCGTTCTTTCCAAGTCCTACATCGCCTCTGCCTCTCAAGACAA
GACAGTCCGGATCTGGACTTCCGATGCGTCAAACCCTGGTCAGTGGACCA
GCCAGCAACTTGAGTTCGACACTGTACTCTGGCGAGTTAGCTGGAGCCCT
AGTGGAAACATTCTTGCTGTGAGCGGTGGCGATAACAAGGTCAGCTTGTG
GAAGGAAAACCTCAAGGGGCAATGGGAGAAGGTAAAGGATATCGAGGAGT
AGGCGCACCCTAAGTTCGGAACTATCCTCGCTTCCTCCTCGTACGATGGA
AAGGTGCTCATCTGGCGCGAACAACACCAGAACGCCACGTCACCCGTCGC
TGGCGGCGCTTGGACGAAGGTGTTCGACTTCTCTCTACACACCGCTTCAG
TGAACATGGTCTCCTGGGCTCCGCATGAAAGTGGCTGTCTCCTCGCTTGC
GCCTCCTCGGACGGACATGTTAGCGTTCTTGAGTTCCGTGACAATAGCTG
GACTCACCAGATCTTCCACGCCCACGGTATGGGCGTGAACTCTATCAGCT
GGGCACCTGCAGCCGCCCCGGGCAGCTTGATCAGCTCCAACCCTGGACCG
GGCCAGCAGCGGAGATTCGTCACTGGTGGAAGCGACAACCTGCTGAAGAT
CTGGGACTACAAACATGAAGGAGCTGTGTGGTGTGTGGCTTGGCACGATG
CCGGCCTGGACTACTACGGCCGCAGATTGGCAACATGTTCATCGGACAAA
ACGATAAAGATCTTTGAAATCGAAGGAGAGACACATCGGTTGATTGAGAC
ATTGAAGGGGCTGCTCAAGTAATCTCCAATTCCGGACACGATGAGATGAT
TATGCCCGGAAACCAAGACCTACAACAACACGCAGACTCTCGAAGGCCAC
TCCGACTGGGTTCGGGATGTCGCTTGGTCGCCTAGCGTTCTTTCCAAGTC
CTACATCGCCTCTGCCTCTCAAGACAAGACAGTCCGGATCTGGACTTCCG
ATGCGTCAAACCCTGGTCAGTGGACCAGCCAGCAACTTGAGTTCGACACT
GTACTCTGGCGAGTTAGCTGGAGCCCTAGTGGAAACATTCTTGCTGTGAG
CGGTGGCGATAACAAGGTCAGCTTGTGGAAGGAAAACCTCAAGGGGCAAT
GGGAGAAGGTAAAGGATATCGAGGAGTAGGCGCACCCTAAGTTCGGAACT
ATCCTCGCTTCCTCCTCGTACGATGGAAAGGTGCTCATCTGGCGCGAACA
ACACCAGAACGCCACGTCACCCGTCGCTGGCGGCGCTTGGACGAAGGTGT
TCGACTTCTCTCTACACACCGCTTCAGTGAACATGGTCTCCTGGGCTCCG
CATGAAAGTGGCTGTCTCCTCGCTTGCGCCTCCTCGGACGGACATGTTAG
CGTTCTTGAGTTCCGTGACAATAGCTGGACTCACCAGATCTTCCACGCCC
ACGGTATGGGCGTGAACTCTATCAGCTGGGCACCTGCAGCCGCCCCGGGC
AGCTTGATCAGCTCCAACCCTGGACCGGGCCAGCAGCGGAGATTCGTCAC
TGGTGGAAGCGACAACCTGCTGAAGATCTGGGACTACAAACATGAAGGAG
CTGTGTGGTGTGTGGCTTGGCACGATGCCGGCCTGGACTACTACGGCCGC
AGATTGGCAACATGTTCATCGGACAAAACGATAAAGATCTTTGAAATCGA
AGGAGAGACACATCGGTTGATTGAGACATTGAAGGGGCTGCTCAAGTAAT
CTCCAATTCCGGACACGATGAGATGATTATGCCCGGAAACCAAGACCTAC
AACAACACGCAGACTCTCGAAGGCCACTCCGACTGGGTTCGGGATGTCGC
TTGGTCGCCTAGCGTTCTTTCCAAGTCCTACATCGCCTCTGCCTCTCAAG
ACAAGACAGTCCGGATCTGGACTTCCGATGCGTCAAACCCTGGTCAGTGG
ACCAGCCAGCAACTTGAGTTCGACACTGTACTCTGGCGAGTTAGCTGGAG
CCCTAGTGGAAACATTCTTGCTGTGAGCGGTGGCGATAACAAGGTCAGCT
TGTGGAAGGAAAACCTCAAGGGGCAATGGGAGAAGGTAAAGGATATCGAG
GAGTAGGCGCACCCTAAGTTCGGAACTATCCTCGCTTCCTCCTCGTACGA
TGGAAAGGTGCTCATCTGGCGCGAACAACACCAGAACGCCACGTCACCCG
TCGCTGGCGGCGCTTGGACGAAGGTGTTCGACTTCTCTCTACACACCGCT
TCAGTGAACATGGTCTCCTGGGCTCCGCATGAAAGTGGCTGTCTCCTCGC
TTGCGCCTCCTCGGACGGACATGTTAGCGTTCTTGAGTTCCGTGACAATA
GCTGGACTCACCAGATCTTCCACGCCCACGGTATGGGCGTGAACTCTATC
AGCTGGGCACCTGCAGCCGCCCCGGGCAGCTTGATCAGCTCCAACCCTGG
ACCGGGCCAGCAGCGGAGATTCGTCACTGGTGGAAGCGACAACCTGCTGA
AGATCTGGGACTACAAACATGAAGGAGCTGTGTGGTGTGTGGCTTGGCAC
GATGCCGGCCTGGACTACTACGGCCGCAGATTGGCAACATGTTCATCGGA
CAAAACGATAAAGATCTTTGAAATCGAAGGAGAGACACATCGGTTGATTG
AGACATTGAAGGGGCTGCTCAAGTAATCTCCAATTCCGGACACGATGAGA
TGATTATGCCCGGAAACCAAGACCTACAACAACACGCAGACTCTCGAAGG
CCACTCCGACTGGGTTCGGGATGTCGCTTGGTCGCCTAGCGTTCTTTCCA
AGTCCTACATCGCCTCTGCCTCTCAAGACAAGACAGTCCGGATCTGGACT
TCCGATGCGTCAAACCCTGGTCAGTGGACCAGCCAGCAACTTGAGTTCGA
CACTGTACTCTGGCGAGTTAGCTGGAGCCCTAGTGGAAACATTCTTGCTG
TGAGCGGTGGCGATAACAAGGTCAGCTTGTGGAAGGAAAACCTCAAGGGG
CAATGGGAGAAGGTAAAGGATATCGAGGAGTAGGCGCACCCTAAGTTCGG
AACTATCCTCGCTTCCTCCTCGTACGATGGAAAGGTGCTCATCTGGCGCG
AACAACACCAGAACGCCACGTCACCCGTCGCTGGCGGCGCTTGGACGAAG
GTGTTCGACTTCTCTCTACACACCGCTTCAGTGAACATGGTCTCCTGGGC
TCCGCATGAAAGTGGCTGTCTCCTCGCTTGCGCCTCCTCGGACGGACATG
TTAGCGTTCTTGAGTTCCGTGACAATAGCTGGACTCACCAGATCTTCCAC
GCCCACGGTATGGGCGTGAACTCTATCAGCTGGGCACCTGCAGCCGCCCC
GGGCAGCTTGATCAGCTCCAACCCTGGACCGGGCCAGCAGCGGAGATTCG
TCACTGGTGGAAGCGACAACCTGCTGAAGATCTGGGACTACAAACATGAA
GGAGCTGTGTGGTGTGTGGCTTGGCACGATGCCGGCCTGGACTACTACGG
CCGCAGATTGGCAACATGTTCATCGGACAAAACGATAAAGATCTTTGAAA
TCGAAGGAGAGACACATCGGTTGATTGAGACATTGAAGGGGCTGCTCAAG
TAATCTCCAATTCCGGACACGATGAGATGATTATGCCCGGAAACCAAGAC
CTACAACAACACGCAGACTCTCGAAGGCCACTCCGACTGGGTTCGGGATG
TCGCTTGGTCGCCTAGCGTTCTTTCCAAGTCCTACATCGCCTCTGCCTCT
CAAGACAAGACAGTCCGGATCTGGACTTCCGATGCGTCAAACCCTGGTCA
GTGGACCAGCCAGCAACTTGAGTTCGACACTGTACTCTGGCGAGTTAGCT
GGAGCCCTAGTGGAAACATTCTTGCTGTGAGCGGTGGCGATAACAAGGTC
AGCTTGTGGAAGGAAAACCTCAAGGGGCAATGGGAGAAGGTAAAGGATAT
CGAGGAGTAGGCGCACCCTAAGTTCGGAACTATCCTCGCTTCCTCCTCGT
ACGATGGAAAGGTGCTCATCTGGCGCGAACAACACCAGAACGCCACGTCA
CCCGTCGCTGGCGGCGCTTGGACGAAGGTGTTCGACTTCTCTCTACACAC
CGCTTCAGTGAACATGGTCTCCTGGGCTCCGCATGAAAGTGGCTGTCTCC
TCGCTTGCGCCTCCTCGGACGGACATGTTAGCGTTCTTGAGTTCCGTGAC
AATAGCTGGACTCACCAGATCTTCCACGCCCACGGTATGGGCGTGAACTC
TATCAGCTGGGCACCTGCAGCCGCCCCGGGCAGCTTGATCAGCTCCAACC
CTGGACCGGGCCAGCAGCGGAGATTCGTCACTGGTGGAAGCGACAACCTG
CTGAAGATCTGGGACTACAAACATGAAGGAGCTGTGTGGTGTGTGGCTTG
GCACGATGCCGGCCTGGACTACTACGGCCGCAGATTGGCAACATGTTCAT
CGGACAAAACGATAAAGATCTTTGAAATCGAAGGAGAGACACATCGGTTG
ATTGAGACATTGAAGGGGCTGCTCAAGTAATCTCCAATTCCGGACACGAT
GAGATGATTATG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008352-T1.utr3p1 | KJC3_008352-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008352-T1.utr5p1 | KJC3_008352-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036322 |
| DBxref | InterPro:IPR017986 |
| DBxref | InterPro:IPR015943 |
| DBxref | InterPro:IPR001680 |
| DBxref | InterPro:IPR020472 |
| DBxref | PFAM:PF00400 |
| Product | GTPase-activating protein S13 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:1782196..1784019 - |
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