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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:2166582..2168027+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008472-T1 ID=KJC3_008472-T1|Name=KJC3_008472-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1446bp|location=Sequence derived from alignment at ch6:2166582..2168027+ (Aspergillus niger KJC3)
CATCTACATCGTTCCATTATTTGATATTATCCACTGGTCTACCCTCACCA
CTATACCCACAACAGACACAATGAAACAATAATTCCTGGACAGATATCTT
CATTCTATCCTATTATTTCGTATATTTATATATATACCACGCTGTCGAAT
ATATCCAACCATTACCACACCGAAGTGATCATCAACAGCACAAGCAAGTT
ACTAGCAACAACTCCATGAATACTAGCTACTGCTATACCAGAAGCTAGAC
CAAACCACATGATCAGATAGAAAGAAAGAGAGAAAATTACAAGAATGAAA
TACCCCTGGCTCCGCCCCCTCAAAGCAAAAGCCTTGCAACAAATAGCCCA
GAAAACGGGGATTCAAAGCTCAGGCACCAAGGCTGTGTTGGTGGAGAGGT
TAGAAGGGGAACTTACTCCTCTCTTCCCTCATATTCAGAATGACAGAGGG
AAGCTGAACGAACATAAGAACGAAAAGAGAAGGAATAATGATGATAATGA
TGGGATAAGAGTCCTAAGCATCGATATGGGGATTCGGAATCTGGCTTTTG
CGGTGTTGCATTCTCCTTATCCTTCCTCCTCCTCTTTTTCTTCTTCGGGA
TCAATATCATCTACTGGATCATCCGAGGCATATACACCCAGAGACAAAGC
CAAGGAAGGGAATAGCATAACCCTCACCGCGTGGAAAAGACTCTCCATTC
CTGATCTGTGCTATGCGCAACTTGAAGGAACCCCATCCCTCATCACCACC
ACTACCAAACCCAAGTCACAAGTCACAGAAGAAGCTAAAGAAGACTTTTC
CCCCTCCCTCTACGCCCGCCACGCATACACCCTCATCACGACCCTCCTGT
CCACGTATAACCCCACCCACATCCTGATCGAAAGACAGCGGTTCCGCACG
GGAGGCGGGTCCGCGGTCCAGGAGTGGACGATCCGCGTGGGTGTTTTGGA
GGGGATGTTGTATGCTGTTTTGGAGACGATTAATTCGTCCCTTTTATCTT
CTTCTTCTTTTTCTTCTGGTGGTAAGGTGCAGGTGTATCCTGTTGAGCCT
GGGAGGGTGAGTCGGTTTTGGGGGGAGGAATCTGGGGATATTGGTGATGG
GGGTGGAGATATGGTGGTGAAGAAGCAGAAGAAGAGGAAGAATGTGAGGG
ATGTGAAGAAGATGAAGATTGCGTTGGTGAGGGAGTGGTTGGTGTCTGCT
GCGAATGACGATGGGGATGGGAGGGTAGTGCTTGGTGGTAGTGCTGGGGA
GGGGGATGAGGTGAGGGAGTTGGCGAGTGCGTTTCTGGAAAAGTGTGAAG
GGAAGAGACGGACCAAGAAGGGGGAAGATGGTGTGGATATTGGCAAATTG
GATGATTTGGCGGATTGTCTTGTGCAGGGGGTTACTTGGTTGGAGTGGCA
GAGGATGAGGGAGAAGATTGTTACGGAGGGGGGGATTAATTTATAA back to topCoding sequence (CDS) from alignment at ch6:2166582..2168027+ >KJC3_008472-T1 ID=KJC3_008472-T1|Name=KJC3_008472-T1|organism=Aspergillus niger KJC3|type=CDS|length=1152bp|location=Sequence derived from alignment at ch6:2166582..2168027+ (Aspergillus niger KJC3)
ATGAAATACCCCTGGCTCCGCCCCCTCAAAGCAAAAGCCTTGCAACAAAT
AGCCCAGAAAACGGGGATTCAAAGCTCAGGCACCAAGGCTGTGTTGGTGG
AGAGGTTAGAAGGGGAACTTACTCCTCTCTTCCCTCATATTCAGAATGAC
AGAGGGAAGCTGAACGAACATAAGAACGAAAAGAGAAGGAATAATGATGA
TAATGATGGGATAAGAGTCCTAAGCATCGATATGGGGATTCGGAATCTGG
CTTTTGCGGTGTTGCATTCTCCTTATCCTTCCTCCTCCTCTTTTTCTTCT
TCGGGATCAATATCATCTACTGGATCATCCGAGGCATATACACCCAGAGA
CAAAGCCAAGGAAGGGAATAGCATAACCCTCACCGCGTGGAAAAGACTCT
CCATTCCTGATCTGTGCTATGCGCAACTTGAAGGAACCCCATCCCTCATC
ACCACCACTACCAAACCCAAGTCACAAGTCACAGAAGAAGCTAAAGAAGA
CTTTTCCCCCTCCCTCTACGCCCGCCACGCATACACCCTCATCACGACCC
TCCTGTCCACGTATAACCCCACCCACATCCTGATCGAAAGACAGCGGTTC
CGCACGGGAGGCGGGTCCGCGGTCCAGGAGTGGACGATCCGCGTGGGTGT
TTTGGAGGGGATGTTGTATGCTGTTTTGGAGACGATTAATTCGTCCCTTT
TATCTTCTTCTTCTTTTTCTTCTGGTGGTAAGGTGCAGGTGTATCCTGTT
GAGCCTGGGAGGGTGAGTCGGTTTTGGGGGGAGGAATCTGGGGATATTGG
TGATGGGGGTGGAGATATGGTGGTGAAGAAGCAGAAGAAGAGGAAGAATG
TGAGGGATGTGAAGAAGATGAAGATTGCGTTGGTGAGGGAGTGGTTGGTG
TCTGCTGCGAATGACGATGGGGATGGGAGGGTAGTGCTTGGTGGTAGTGC
TGGGGAGGGGGATGAGGTGAGGGAGTTGGCGAGTGCGTTTCTGGAAAAGT
GTGAAGGGAAGAGACGGACCAAGAAGGGGGAAGATGGTGTGGATATTGGC
AAATTGGATGATTTGGCGGATTGTCTTGTGCAGGGGGTTACTTGGTTGGA
GTGGCAGAGGATGAGGGAGAAGATTGTTACGGAGGGGGGGATTAATTTAT
AA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008472-T1.utr5p1 | KJC3_008472-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR012337 |
| DBxref | InterPro:IPR036397 |
| DBxref | InterPro:IPR015242 |
| DBxref | InterPro:IPR003034 |
| DBxref | PFAM:PF09159 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:2166582..2168027 + |
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