You are here

Home

KJC3_008487-T1, KJC3_008487-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_008487-T1
Unique NameKJC3_008487-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:2200814..2202036-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_008487-T1 ID=KJC3_008487-T1|Name=KJC3_008487-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1223bp|location=Sequence derived from alignment at ch6:2200814..2202036- (Aspergillus niger KJC3)
AGGGAATTGATTGTAGGCAGCGGGCGCAAGCGTCATCGGCAGAAGCTCGG
CGGCTCCACGCGTTGCTGGCAGAGCTTCAATCACTCCTCCATCCATCCAT
CCTCCGCCCATCTTCCATCTCCCATCGCCTCAACCCTCCCTCTACATGCT
CACATCCCCCCTTAGCTCTTGGAACTCGACCCGGAAATTCATATTCGATC
CTATTCTGAGCTTCTAGTCGTGCAATTCTTTCTCAACCATGGTATGTGTG
CTGCGTGACCCTCACCTCTCCCTCGAACCAACCTAGCTGACAGACCTCCT
CCACAGAGTTCCCCTTTCGATATCAGTATGTACTAGCTTCGCACAGCTTA
CCATCATGACTATTAACTCTCGGATGAACAGATGGCGGTGCCTGCGTCGC
CATGGTGGGCAAGGACTGCGTCGCAATCGCCTGTGATCTCCGGTTGGGTA
TGCAGGCCCTGACTGTCTCCAACAACTTCCCCAAGATCTTCAACTACGGC
CCCTCCACCTTCCTCGGTCTGACCGGCCTGGCCACCGACGTGTCGACTGT
GTCCGACCTTTTCCGGTACAAGGTCAACATGTACCGCCTCCGCGAGGAAC
GGAATATTGCCCCCCAGACTCTCGCCAACCTGGTCAGTTCGTCATTATAC
GAGAAACGGTTCGGTCCTTTCTTCGTCAGCCCCGTCATTGCCGGAATCAA
CAGCACAACGGGGAAGCCTTTCATCTGCGGATTTGACAGTATCGGGTGTA
TCGATTTTGCGAAGGACTTCATTGTTAGCGGAACTGCCAGTGAGCAGCTG
TTTGGTACCTGCGAGGGTCTGTGGGAGCCGGACTTGGTAAGACTACTCCC
TTTTGGAGAAAAAAAAAAATAAATGAAGATGGTGATGTATCGAGTCTGTA
CTAACATTCTGATGTAGTCCCCTGAGGACCTGTTCGAGACCATCTCGCAA
GCCTTGCTCAGCGCCGTCGATCGAGACGCCCTTTCCGGTTGGGGTGCACA
GGTGTATATCATAGAAAAGGACAAGGTGACCAAGCGTCTACTGAAGGGAA
GGCAAGATTAGATGGCATTCTCTGGAGTATAATTGTTTTCTAATGTCACG
CCGTTCGTCTGTTTTAATTTACGTCCCTCAACATGGAATCTTGCTGTTGA
TAGCAGTCAAAGATACGTGCTGTCGATAGAGATTGGCCAAACAGAAAATG
AGTATTATGAACTATGATCAAGC
back to top

Coding sequence (CDS) from alignment at ch6:2200814..2202036-

>KJC3_008487-T1 ID=KJC3_008487-T1|Name=KJC3_008487-T1|organism=Aspergillus niger KJC3|type=CDS|length=2484bp|location=Sequence derived from alignment at ch6:2200814..2202036- (Aspergillus niger KJC3)
TCCCCTGAGGACCTGTTCGAGACCATCTCGCAAGCCTTGCTCAGCGCCGT
CGATCGAGACGCCCTTTCCGGTTGGGGTGCACAGGTGTATATCATAGAAA
AGGACAAGGTGACCAAGCGTCTACTGAAGGGAAGGCAAGATTAGATGGCG
GTGCCTGCGTCGCCATGGTGGGCAAGGACTGCGTCGCAATCGCCTGTGAT
CTCCGGTTGGGTATGCAGGCCCTGACTGTCTCCAACAACTTCCCCAAGAT
CTTCAACTACGGCCCCTCCACCTTCCTCGGTCTGACCGGCCTGGCCACCG
ACGTGTCGACTGTGTCCGACCTTTTCCGGTACAAGGTCAACATGTACCGC
CTCCGCGAGGAACGGAATATTGCCCCCCAGACTCTCGCCAACCTGGTCAG
TTCGTCATTATACGAGAAACGGTTCGGTCCTTTCTTCGTCAGCCCCGTCA
TTGCCGGAATCAACAGCACAACGGGGAAGCCTTTCATCTGCGGATTTGAC
AGTATCGGGTGTATCGATTTTGCGAAGGACTTCATTGTTAGCGGAACTGC
CAGTGAGCAGCTGTTTGGTACCTGCGAGGGTCTGTGGGAGCCGGACTTGA
GTTCCCCTTTCGATATCAATGTCCCCTGAGGACCTGTTCGAGACCATCTC
GCAAGCCTTGCTCAGCGCCGTCGATCGAGACGCCCTTTCCGGTTGGGGTG
CACAGGTGTATATCATAGAAAAGGACAAGGTGACCAAGCGTCTACTGAAG
GGAAGGCAAGATTAGATGGCGGTGCCTGCGTCGCCATGGTGGGCAAGGAC
TGCGTCGCAATCGCCTGTGATCTCCGGTTGGGTATGCAGGCCCTGACTGT
CTCCAACAACTTCCCCAAGATCTTCAACTACGGCCCCTCCACCTTCCTCG
GTCTGACCGGCCTGGCCACCGACGTGTCGACTGTGTCCGACCTTTTCCGG
TACAAGGTCAACATGTACCGCCTCCGCGAGGAACGGAATATTGCCCCCCA
GACTCTCGCCAACCTGGTCAGTTCGTCATTATACGAGAAACGGTTCGGTC
CTTTCTTCGTCAGCCCCGTCATTGCCGGAATCAACAGCACAACGGGGAAG
CCTTTCATCTGCGGATTTGACAGTATCGGGTGTATCGATTTTGCGAAGGA
CTTCATTGTTAGCGGAACTGCCAGTGAGCAGCTGTTTGGTACCTGCGAGG
GTCTGTGGGAGCCGGACTTGAGTTCCCCTTTCGATATCAATGTCCCCTGA
GGACCTGTTCGAGACCATCTCGCAAGCCTTGCTCAGCGCCGTCGATCGAG
ACGCCCTTTCCGGTTGGGGTGCACAGGTGTATATCATAGAAAAGGACAAG
GTGACCAAGCGTCTACTGAAGGGAAGGCAAGATTAGATGGCGGTGCCTGC
GTCGCCATGGTGGGCAAGGACTGCGTCGCAATCGCCTGTGATCTCCGGTT
GGGTATGCAGGCCCTGACTGTCTCCAACAACTTCCCCAAGATCTTCAACT
ACGGCCCCTCCACCTTCCTCGGTCTGACCGGCCTGGCCACCGACGTGTCG
ACTGTGTCCGACCTTTTCCGGTACAAGGTCAACATGTACCGCCTCCGCGA
GGAACGGAATATTGCCCCCCAGACTCTCGCCAACCTGGTCAGTTCGTCAT
TATACGAGAAACGGTTCGGTCCTTTCTTCGTCAGCCCCGTCATTGCCGGA
ATCAACAGCACAACGGGGAAGCCTTTCATCTGCGGATTTGACAGTATCGG
GTGTATCGATTTTGCGAAGGACTTCATTGTTAGCGGAACTGCCAGTGAGC
AGCTGTTTGGTACCTGCGAGGGTCTGTGGGAGCCGGACTTGAGTTCCCCT
TTCGATATCAATGTCCCCTGAGGACCTGTTCGAGACCATCTCGCAAGCCT
TGCTCAGCGCCGTCGATCGAGACGCCCTTTCCGGTTGGGGTGCACAGGTG
TATATCATAGAAAAGGACAAGGTGACCAAGCGTCTACTGAAGGGAAGGCA
AGATTAGATGGCGGTGCCTGCGTCGCCATGGTGGGCAAGGACTGCGTCGC
AATCGCCTGTGATCTCCGGTTGGGTATGCAGGCCCTGACTGTCTCCAACA
ACTTCCCCAAGATCTTCAACTACGGCCCCTCCACCTTCCTCGGTCTGACC
GGCCTGGCCACCGACGTGTCGACTGTGTCCGACCTTTTCCGGTACAAGGT
CAACATGTACCGCCTCCGCGAGGAACGGAATATTGCCCCCCAGACTCTCG
CCAACCTGGTCAGTTCGTCATTATACGAGAAACGGTTCGGTCCTTTCTTC
GTCAGCCCCGTCATTGCCGGAATCAACAGCACAACGGGGAAGCCTTTCAT
CTGCGGATTTGACAGTATCGGGTGTATCGATTTTGCGAAGGACTTCATTG
TTAGCGGAACTGCCAGTGAGCAGCTGTTTGGTACCTGCGAGGGTCTGTGG
GAGCCGGACTTGAGTTCCCCTTTCGATATCAATG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0019774proteasome core complex, beta-subunit complex
GO:0005839proteasome core complex
Vocabulary: Biological Process
TermDefinition
GO:0043161proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004175endopeptidase activity
GO:0004298threonine-type endopeptidase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PUP3KJC3_008487Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008487-T1KJC3_008487-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008487-T1.cdsKJC3_008487-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008487-T1.utr3p1KJC3_008487-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008487-T1.exon4KJC3_008487-T1.exon4Aspergillus niger KJC3exon
KJC3_008487-T1.exon3KJC3_008487-T1.exon3Aspergillus niger KJC3exon
KJC3_008487-T1.exon2KJC3_008487-T1.exon2Aspergillus niger KJC3exon
KJC3_008487-T1.exon1KJC3_008487-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008487-T1.utr5p1KJC3_008487-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09264G4X
NoteMEROPS:MER0001710
DBxrefInterPro:IPR033811
DBxrefInterPro:IPR023333
DBxrefInterPro:IPR016050
DBxrefInterPro:IPR029055
DBxrefInterPro:IPR001353
DBxrefPFAM:PF00227
Productproteasome core particle subunit beta 3
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:2200814..2202036 -
Powered by Drupal