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KJC3_008500-T1, KJC3_008500-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_008500-T1
Unique NameKJC3_008500-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:2234741..2236387-

Legend: CDSpolypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_008500-T1 ID=KJC3_008500-T1|Name=KJC3_008500-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1647bp|location=Sequence derived from alignment at ch6:2234741..2236387- (Aspergillus niger KJC3)
ATGTCGTCCTCACAATCGCCGCAGAACAGCAATGCGGACTCCAGTTCCTC
AGCGAAGCCATTCTCTCTATCATTAGGCGGAAACTCCACGAAAGCACCAG
CAAACGGCCAGCCGAAGAAAACATCCTTCAACATTCAAGGCGCGGCGCGT
TCCACCGACTCACCCAGCCGAACACTCGCGCGCCGACCTCACCACCTGCA
CGATGACGAAGAATCCGATGAAGAAGCCGCGCCCACTCATGAAGCCGTCA
CCGGGTTCGACACCTTAACGGGAACGGCTATTCCCGCCAACAAGGTGGAA
GAAAAGCGCGAGCTGGTCATTCCCGTCGCTGGAAATAATAATTGGAGGGA
CCGTCCGGGCGTCAATCTCCGGAAAGCTAAGGGCAAGAACCTCTTGCCAA
AGGAGGTCCAGGCCATTCAGGAAGCTCAGAAACGGGGTGAAGTTGCTGGA
GATAATGTTGAGACAGAGCGTCCGAGTATGGCTTATGGGTTGAGTTTTGC
GCAGCCGGCTTCGCAGGATTCGGCCCAGGTGGCGGATAATGATCGCCCGA
TGAAGGATGTTACTGAGCCTGCTGCTACTCCTGCTGCCGAGGTAGAACCC
AAGCCACTCACGCAGGATGAGATTGCCTTGCAGGCGCTTATTCGAGAGAC
GAAGGGGGAGCCGGAGCGCAGGTCGGATCTTGTTATTGAGTCGGTTAATC
GAGATGACGATGATCGGGCGGGCGGGCGATATGATGAGACGTCTTCGTTT
CGAGCGGATGTTGCGGCGCGCCCGGAGTCTGCGAGCTTGGATCAGTATAA
CGCAATCCCTGTTGAGGAGTTTGGCGCTGCGCTACTTCGTGGTATGGGGT
GGAAGGAGGGTCAAGCTGTAGGAAGAGGAAAATACGGTGGTTCTGCAAAT
CAGGACAATAAGCCGCGGGTCCCGGAGCGTCGTCCTGGGTTCCTGGGGAT
TGGAGCGAAAGATGTGTCTGGGGGGAAGGGTGCAGAGGCCGAGCTCGGTG
CATGGGGCAAGGCTGCCATGCGGAAAGGGTCCAGGAAGGGAGGGAAGGAG
GGCGAGTCCAATCCGGAAGGTGTATATATGCCCATCATGATGCGAAACAA
GCAGACCGGCGAGTTCATAACAGAAGAGGAGCTCGCGGCGCAACGGAAAG
ACGCCAAGAAACGGGGCGACGATGACGAATGGAAGCAACGACGAGATCGC
AATTTGGAGAAGAGTGGCCGTGATAGGGATCGTGATCGTGACTCACGGCG
TCGCGACTACGATGACGATGAAACTGATCGCTATGACAGACGGAGGACCG
GATCTTCAAGGAGAGACCGGAGTTTGTCATCCAGTGACCGGCATTCAAGA
CGGCGCAGATACGAAGATGAAGATAGCGACAGTCGTGATGACCGCTACTA
CCGGGACAGAGACCGTGACCGGGATCGTGACTATCGCCGGGATCGTGATC
GAAATGGAGATCGGGAACGAGAGCGTGACAGGGACAGAGATCGGGATCGG
GACCGCAGCAGACGGTATCGTGATGATGATCGCCATAGTAGCTCAAGGCA
TTCTTCGTCGCATACATCGAGTAGACATCGTGACCGGGATAGGGAGCGAG
ACAGTGATCGCGACTCCCGCCGGAGAAGGAGAGACGATGATCGATGA
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Coding sequence (CDS) from alignment at ch6:2234741..2236387-

>KJC3_008500-T1 ID=KJC3_008500-T1|Name=KJC3_008500-T1|organism=Aspergillus niger KJC3|type=CDS|length=1647bp|location=Sequence derived from alignment at ch6:2234741..2236387- (Aspergillus niger KJC3)
ATGTCGTCCTCACAATCGCCGCAGAACAGCAATGCGGACTCCAGTTCCTC
AGCGAAGCCATTCTCTCTATCATTAGGCGGAAACTCCACGAAAGCACCAG
CAAACGGCCAGCCGAAGAAAACATCCTTCAACATTCAAGGCGCGGCGCGT
TCCACCGACTCACCCAGCCGAACACTCGCGCGCCGACCTCACCACCTGCA
CGATGACGAAGAATCCGATGAAGAAGCCGCGCCCACTCATGAAGCCGTCA
CCGGGTTCGACACCTTAACGGGAACGGCTATTCCCGCCAACAAGGTGGAA
GAAAAGCGCGAGCTGGTCATTCCCGTCGCTGGAAATAATAATTGGAGGGA
CCGTCCGGGCGTCAATCTCCGGAAAGCTAAGGGCAAGAACCTCTTGCCAA
AGGAGGTCCAGGCCATTCAGGAAGCTCAGAAACGGGGTGAAGTTGCTGGA
GATAATGTTGAGACAGAGCGTCCGAGTATGGCTTATGGGTTGAGTTTTGC
GCAGCCGGCTTCGCAGGATTCGGCCCAGGTGGCGGATAATGATCGCCCGA
TGAAGGATGTTACTGAGCCTGCTGCTACTCCTGCTGCCGAGGTAGAACCC
AAGCCACTCACGCAGGATGAGATTGCCTTGCAGGCGCTTATTCGAGAGAC
GAAGGGGGAGCCGGAGCGCAGGTCGGATCTTGTTATTGAGTCGGTTAATC
GAGATGACGATGATCGGGCGGGCGGGCGATATGATGAGACGTCTTCGTTT
CGAGCGGATGTTGCGGCGCGCCCGGAGTCTGCGAGCTTGGATCAGTATAA
CGCAATCCCTGTTGAGGAGTTTGGCGCTGCGCTACTTCGTGGTATGGGGT
GGAAGGAGGGTCAAGCTGTAGGAAGAGGAAAATACGGTGGTTCTGCAAAT
CAGGACAATAAGCCGCGGGTCCCGGAGCGTCGTCCTGGGTTCCTGGGGAT
TGGAGCGAAAGATGTGTCTGGGGGGAAGGGTGCAGAGGCCGAGCTCGGTG
CATGGGGCAAGGCTGCCATGCGGAAAGGGTCCAGGAAGGGAGGGAAGGAG
GGCGAGTCCAATCCGGAAGGTGTATATATGCCCATCATGATGCGAAACAA
GCAGACCGGCGAGTTCATAACAGAAGAGGAGCTCGCGGCGCAACGGAAAG
ACGCCAAGAAACGGGGCGACGATGACGAATGGAAGCAACGACGAGATCGC
AATTTGGAGAAGAGTGGCCGTGATAGGGATCGTGATCGTGACTCACGGCG
TCGCGACTACGATGACGATGAAACTGATCGCTATGACAGACGGAGGACCG
GATCTTCAAGGAGAGACCGGAGTTTGTCATCCAGTGACCGGCATTCAAGA
CGGCGCAGATACGAAGATGAAGATAGCGACAGTCGTGATGACCGCTACTA
CCGGGACAGAGACCGTGACCGGGATCGTGACTATCGCCGGGATCGTGATC
GAAATGGAGATCGGGAACGAGAGCGTGACAGGGACAGAGATCGGGATCGG
GACCGCAGCAGACGGTATCGTGATGATGATCGCCATAGTAGCTCAAGGCA
TTCTTCGTCGCATACATCGAGTAGACATCGTGACCGGGATAGGGAGCGAG
ACAGTGATCGCGACTCCCGCCGGAGAAGGAGAGACGATGATCGATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SPP2KJC3_008500Aspergillus niger KJC3gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008500-T1.cdsKJC3_008500-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008500-T1.exon1KJC3_008500-T1.exon1Aspergillus niger KJC3exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008500-T1KJC3_008500-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR000467
DBxrefInterPro:IPR026822
DBxrefPFAM:PF12656
ProductPre-mRNA-splicing factor spp2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:2234741..2236387 -
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