|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:2250093..2251141+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008506-T1 ID=KJC3_008506-T1|Name=KJC3_008506-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1049bp|location=Sequence derived from alignment at ch6:2250093..2251141+ (Aspergillus niger KJC3) CCGTCCCCAGCTTTCCGCGTCAGCGAGGTCCAATTACGTTTCACACTCGT
CTTCAATCTGCTCATCACTATGCTTTGCTTCCGGTGTACGGCTCTGCCGA
CCGCTTTCAGGTCCTTTGCGGCCCCAGCAACCAGGTACGTCCGTCCAATT
TTGGCACCCCGGATCCAATGAGACCACGCATCTAGGCTCTCCATATAGCC
CGATTCGTCAGTCAGGTCAGGCAGATTGTCAGGGGAAGCCCCGGCACCTC
AGACACTTCATAGTATTGATGAAAGAAAAATGACTGACTTGAATCAATTC
ACTAGACTCACCTCCGCACCGCTCACATCCACCGCAACCGCTCTATCAAC
ACCGTTCCGTGCCCTCTCCTCCACGACCCTCTCCTCGCTCCATCTCCCAC
AACAACATTTCCCCTCTCAGAGCCTCATTACCTCTTCCTCCACTACTACT
GTCCGTTCCCTGCTCTCCACCAACAACTCTTTCGCAAATCAACAAACGCG
CTCCTTCTCCGCTAGTGCCTCGTTGGCCGGAAAGCGCGATACCTACAACC
CCTCGCGGAGGGTGCAGAAGCGCCGTCACGGATTCCTGGCTCGGTTGCGC
TCGCGAGGTGGACGGAAGATCCTGTTGCGGAGAAGGGCTAGGGGGCGGAA
GTCGCTGAGCTGGTAGTTTGAATGCGTTGTTTGGTGGTGATGGGTTTATT
GGTCTTGTTTAATCTCATATGTGTGTGCTGTGTACCATGACGTTTGTTGC
TCTTTGGATTTTGCGGTATCTGGATCTATTTACTTGGTGGGGTGGCGGCG
GAAGCTTTGTGGCGCCTTTGCGCTCTGTGCTGTCCAGGGTAGGGTAAGAT
GGCATGAGGAGATGCAGCTTCTGATGTCTTGAGCTGGCTTTGCTCGGGTT
CGGTATTACCCTTTGTGTTACTAAGATGGTGGTGATATGGGTCTAAGATT
TCTATCTCGCTACCATTAATAGGACGCTGTCCTATGTGTACCTTATACAT
ATTCATATATAGATATCATATTGTCACGTGGTTTGGTTTATAATTTGTC back to topCoding sequence (CDS) from alignment at ch6:2250093..2251141+ >KJC3_008506-T1 ID=KJC3_008506-T1|Name=KJC3_008506-T1|organism=Aspergillus niger KJC3|type=CDS|length=852bp|location=Sequence derived from alignment at ch6:2250093..2251141+ (Aspergillus niger KJC3) ATGCTTTGCTTCCGGTGTACGGCTCTGCCGACCGCTTTCAGGTCCTTTGC GGCCCCAGCAACCAGACTCACCTCCGCACCGCTCACATCCACCGCAACCG CTCTATCAACACCGTTCCGTGCCCTCTCCTCCACGACCCTCTCCTCGCTC CATCTCCCACAACAACATTTCCCCTCTCAGAGCCTCATTACCTCTTCCTC CACTACTACTGTCCGTTCCCTGCTCTCCACCAACAACTCTTTCGCAAATC AACAAACGCGCTCCTTCTCCGCTAGTGCCTCGTTGGCCGGAAAGCGCGAT ACCTACAACCCCTCGCGGAGGGTGCAGAAGCGCCGTCACGGATTCCTGGC TCGGTTGCGCTCGCGAGGTGGACGGAAGATCCTGTTGCGGAGAAGGGCTA GGGGGCGGAAGTCGCTGAGCTGGTAGATGCTTTGCTTCCGGTGTACGGCT CTGCCGACCGCTTTCAGGTCCTTTGCGGCCCCAGCAACCAGACTCACCTC CGCACCGCTCACATCCACCGCAACCGCTCTATCAACACCGTTCCGTGCCC TCTCCTCCACGACCCTCTCCTCGCTCCATCTCCCACAACAACATTTCCCC TCTCAGAGCCTCATTACCTCTTCCTCCACTACTACTGTCCGTTCCCTGCT CTCCACCAACAACTCTTTCGCAAATCAACAAACGCGCTCCTTCTCCGCTA GTGCCTCGTTGGCCGGAAAGCGCGATACCTACAACCCCTCGCGGAGGGTG CAGAAGCGCCGTCACGGATTCCTGGCTCGGTTGCGCTCGCGAGGTGGACG GAAGATCCTGTTGCGGAGAAGGGCTAGGGGGCGGAAGTCGCTGAGCTGGT AG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
Term | Definition |
GO:0005840 | ribosome |
Vocabulary: Biological Process
Term | Definition |
GO:0006412 | translation |
Vocabulary: Molecular Function
Term | Definition |
GO:0003735 | structural constituent of ribosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_008506-T1.utr5p1 | KJC3_008506-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_008506-T1.utr3p1 | KJC3_008506-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
Property Name | Value |
DBxref | InterPro:IPR000271 |
DBxref | PFAM:PF00468 |
Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
ch6 | supercontig | ch6:2250093..2251141 + |
|