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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:2250093..2251141+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008506-T1 ID=KJC3_008506-T1|Name=KJC3_008506-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1049bp|location=Sequence derived from alignment at ch6:2250093..2251141+ (Aspergillus niger KJC3)
CCGTCCCCAGCTTTCCGCGTCAGCGAGGTCCAATTACGTTTCACACTCGT
CTTCAATCTGCTCATCACTATGCTTTGCTTCCGGTGTACGGCTCTGCCGA
CCGCTTTCAGGTCCTTTGCGGCCCCAGCAACCAGGTACGTCCGTCCAATT
TTGGCACCCCGGATCCAATGAGACCACGCATCTAGGCTCTCCATATAGCC
CGATTCGTCAGTCAGGTCAGGCAGATTGTCAGGGGAAGCCCCGGCACCTC
AGACACTTCATAGTATTGATGAAAGAAAAATGACTGACTTGAATCAATTC
ACTAGACTCACCTCCGCACCGCTCACATCCACCGCAACCGCTCTATCAAC
ACCGTTCCGTGCCCTCTCCTCCACGACCCTCTCCTCGCTCCATCTCCCAC
AACAACATTTCCCCTCTCAGAGCCTCATTACCTCTTCCTCCACTACTACT
GTCCGTTCCCTGCTCTCCACCAACAACTCTTTCGCAAATCAACAAACGCG
CTCCTTCTCCGCTAGTGCCTCGTTGGCCGGAAAGCGCGATACCTACAACC
CCTCGCGGAGGGTGCAGAAGCGCCGTCACGGATTCCTGGCTCGGTTGCGC
TCGCGAGGTGGACGGAAGATCCTGTTGCGGAGAAGGGCTAGGGGGCGGAA
GTCGCTGAGCTGGTAGTTTGAATGCGTTGTTTGGTGGTGATGGGTTTATT
GGTCTTGTTTAATCTCATATGTGTGTGCTGTGTACCATGACGTTTGTTGC
TCTTTGGATTTTGCGGTATCTGGATCTATTTACTTGGTGGGGTGGCGGCG
GAAGCTTTGTGGCGCCTTTGCGCTCTGTGCTGTCCAGGGTAGGGTAAGAT
GGCATGAGGAGATGCAGCTTCTGATGTCTTGAGCTGGCTTTGCTCGGGTT
CGGTATTACCCTTTGTGTTACTAAGATGGTGGTGATATGGGTCTAAGATT
TCTATCTCGCTACCATTAATAGGACGCTGTCCTATGTGTACCTTATACAT
ATTCATATATAGATATCATATTGTCACGTGGTTTGGTTTATAATTTGTC back to topCoding sequence (CDS) from alignment at ch6:2250093..2251141+ >KJC3_008506-T1 ID=KJC3_008506-T1|Name=KJC3_008506-T1|organism=Aspergillus niger KJC3|type=CDS|length=852bp|location=Sequence derived from alignment at ch6:2250093..2251141+ (Aspergillus niger KJC3)
ATGCTTTGCTTCCGGTGTACGGCTCTGCCGACCGCTTTCAGGTCCTTTGC
GGCCCCAGCAACCAGACTCACCTCCGCACCGCTCACATCCACCGCAACCG
CTCTATCAACACCGTTCCGTGCCCTCTCCTCCACGACCCTCTCCTCGCTC
CATCTCCCACAACAACATTTCCCCTCTCAGAGCCTCATTACCTCTTCCTC
CACTACTACTGTCCGTTCCCTGCTCTCCACCAACAACTCTTTCGCAAATC
AACAAACGCGCTCCTTCTCCGCTAGTGCCTCGTTGGCCGGAAAGCGCGAT
ACCTACAACCCCTCGCGGAGGGTGCAGAAGCGCCGTCACGGATTCCTGGC
TCGGTTGCGCTCGCGAGGTGGACGGAAGATCCTGTTGCGGAGAAGGGCTA
GGGGGCGGAAGTCGCTGAGCTGGTAGATGCTTTGCTTCCGGTGTACGGCT
CTGCCGACCGCTTTCAGGTCCTTTGCGGCCCCAGCAACCAGACTCACCTC
CGCACCGCTCACATCCACCGCAACCGCTCTATCAACACCGTTCCGTGCCC
TCTCCTCCACGACCCTCTCCTCGCTCCATCTCCCACAACAACATTTCCCC
TCTCAGAGCCTCATTACCTCTTCCTCCACTACTACTGTCCGTTCCCTGCT
CTCCACCAACAACTCTTTCGCAAATCAACAAACGCGCTCCTTCTCCGCTA
GTGCCTCGTTGGCCGGAAAGCGCGATACCTACAACCCCTCGCGGAGGGTG
CAGAAGCGCCGTCACGGATTCCTGGCTCGGTTGCGCTCGCGAGGTGGACG
GAAGATCCTGTTGCGGAGAAGGGCTAGGGGGCGGAAGTCGCTGAGCTGGT
AG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005840 | ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008506-T1.utr5p1 | KJC3_008506-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008506-T1.utr3p1 | KJC3_008506-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR000271 |
| DBxref | PFAM:PF00468 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:2250093..2251141 + |
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