|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:2273749..2275911+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008515-T1 ID=KJC3_008515-T1|Name=KJC3_008515-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2163bp|location=Sequence derived from alignment at ch6:2273749..2275911+ (Aspergillus niger KJC3)
TCCTCACTGCTTCCGATTGTCCAGGCTTTTCTGGCTTTGCAACACTTCGC
ATTATTAATTATTCGTACTTCCAAGGTCTCACATCATCCATTTCTAGCTT
CTCACAAATATAATTCGACAGCAATTGCCATTCATTTTCCCCCGCTGTTC
TCAATTCCTTTTCCCCTCAGCGTGCTCTCTGCCGATCCGCCGCAAATCTT
GCACCCCCAGTTGCTGCCAGTAGTGCTGCTCCACTAGGCCGCTGGCACGA
ACAGATCTGCCTCCAGCCTCCCCTTTACTATTATTTGGCTGTCTGTGTGC
TTGCAGTTCCGGCACGCTCTGGCCTTTCCCTTCTCCTCTCGTCTCTCCCC
CCACCTCGGGCACGCTCCTTTCACGCAGACAGGACAATTGTTCGAAAGGA
GTCGACCTGCCGATATTTAACCGCGGGTGGACTGACGGCTGATCTTGCTG
GAGCCGGTGGATCACGATATCTGGTTACAGTGTCGACTTGAAGATTTCCC
GCGCCTGAGCCAAATAACCACTGCCTCCTTCACGTCTCTCGCTCTGTCTT
CTATAGCTTCCCTCTCCCCCTAGCCCCCTGGATATCTGGAATCAACGTCC
CGCCTGCCATGTCTGACGAGCCTACGATCCTTCGCCCGCGTCCGCGACGT
GTGTTCGATCTCACGCCTGAAGAGCCCTCTACCCCAGTCGAACCCGCCAA
CCCAGACCTGCTCGTCCCTAAAGATGCCGGCTCTACCAGCGTCAGCCGCA
ATGCTTCGATCATGAACTTGACCTCGTCGACGCTGTACGGTATTTACTCT
CCTACTGCATTCGACAGTTCTCGTGACGACTCGAGTCCCTGGGGCACGGA
AGCCCATACGCCTCAGTCAGGAAGCCCGAGGATCCAGTCTGAAGCTCCAG
CACCAGGCAAACTTCGGCGGACACGATCACGGCTTAGCCACGGCCTGTTT
CGAGGCGTCATCCTTCCGCAAGCGCTGAAGAGCGCTTTCCTCTTGGGCTT
TGGTGTTGTTTATGGAGTCATTACAATTCACCTGCATGAAAACCATTGGA
TTACCCCGGTGAAGTTGGAGAATACACATTACTACGGATCATGGCAGTAT
CTTGCTTTCTGGGGTGTGGCCGGCGCCGTTTTGGGCAATATTCTTCCTTG
GTTCGACCAGTTCTCAGATGAAATTATTGGCAGCCCTAAGCAGGCAAAAG
GGTCAAGCGACCCCGAGACTGCAGACCGTACTCTCTCATGGGTTTCAGTG
GTTCGCAGCGTTGGCGCGTTTGTGGGAATTGCATTTGCCATGGTAAGCAA
AATTCTAGCAACCAGCGTTCGTCGGTTCGATACTAATCTGGCTTTGTATC
TTACAGCGCCGACTTCCCTGGGAATCTACAACTCAAGCGTCACTTACCCT
CGCGCTCGTGAACCCCGTACTCTGGTACCTCATCGACCGCACACGGACCG
GCTTCGTCTTATCGACCGTTGTTGGATTGGCCGGCATGGGAATAATATTG
GGACTCAAGCCTGACTTAATTCCGTCTGCAGAGACTTCGGCTTTTGCAGC
AAGCAAATTCGATGTCACCGGTTGGGGATATGGGCTGGCTGTTGAGATGT
CACAGGAAAGCATAGCAGTAAGGACTTGGGTTGCCAGCGTTCTTTTCTGC
GCATGTGTATGCTTTGGAAACATTGGCCGGCAGCTTGCCATTGGAGTCCA
GCGCGAGTCGCTCAAGTGAAGCGAGGACAGGATCGTACCCTTCTCATCCC
ATCACTCAATTAACACAGGGCATTTTGTATACCCTAGCACTCCACTTTTT
ATAATGCAGAAATCCTCCTTCCTTTGGCCTTGTGCAGTTTCTCAGAGACA
AGTCTGTTACTAGATAGATGATCCGTTAAGCCAGAAGCCATGGCGACGAG
ATTATGGAAATGACTACGAACTCCGAATACACGAAGTGACAATAAATATT
AGTTAGATAGTTAAGCAGAGATTGTAGAATCAATCATTGCAGTCCCTTCC
ACCGAACCTAAGTTCAAGTCAGACACTGCACCCAAGATCGATACTCTGCC
AGAGGCAGTTTCTCTCCATTCTGTATGACGATTTCCGTACTTCATCGGCT
ATACAGACCCAGTAGGGAAAGATATCCTCGCAGGAACGCTTTTTGAAGAA
TGTTGATTTTGCG back to topCoding sequence (CDS) from alignment at ch6:2273749..2275911+ >KJC3_008515-T1 ID=KJC3_008515-T1|Name=KJC3_008515-T1|organism=Aspergillus niger KJC3|type=CDS|length=2094bp|location=Sequence derived from alignment at ch6:2273749..2275911+ (Aspergillus niger KJC3)
ATGTCTGACGAGCCTACGATCCTTCGCCCGCGTCCGCGACGTGTGTTCGA
TCTCACGCCTGAAGAGCCCTCTACCCCAGTCGAACCCGCCAACCCAGACC
TGCTCGTCCCTAAAGATGCCGGCTCTACCAGCGTCAGCCGCAATGCTTCG
ATCATGAACTTGACCTCGTCGACGCTGTACGGTATTTACTCTCCTACTGC
ATTCGACAGTTCTCGTGACGACTCGAGTCCCTGGGGCACGGAAGCCCATA
CGCCTCAGTCAGGAAGCCCGAGGATCCAGTCTGAAGCTCCAGCACCAGGC
AAACTTCGGCGGACACGATCACGGCTTAGCCACGGCCTGTTTCGAGGCGT
CATCCTTCCGCAAGCGCTGAAGAGCGCTTTCCTCTTGGGCTTTGGTGTTG
TTTATGGAGTCATTACAATTCACCTGCATGAAAACCATTGGATTACCCCG
GTGAAGTTGGAGAATACACATTACTACGGATCATGGCAGTATCTTGCTTT
CTGGGGTGTGGCCGGCGCCGTTTTGGGCAATATTCTTCCTTGGTTCGACC
AGTTCTCAGATGAAATTATTGGCAGCCCTAAGCAGGCAAAAGGGTCAAGC
GACCCCGAGACTGCAGACCGTACTCTCTCATGGGTTTCAGTGGTTCGCAG
CGTTGGCGCGTTTGTGGGAATTGCATTTGCCATGCGCCGACTTCCCTGGG
AATCTACAACTCAAGCGTCACTTACCCTCGCGCTCGTGAACCCCGTACTC
TGGTACCTCATCGACCGCACACGGACCGGCTTCGTCTTATCGACCGTTGT
TGGATTGGCCGGCATGGGAATAATATTGGGACTCAAGCCTGACTTAATTC
CGTCTGCAGAGACTTCGGCTTTTGCAGCAAGCAAATTCGATGTCACCGGT
TGGGGATATGGGCTGGCTGTTGAGATGTCACAGGAAAGCATAGCAGTAAG
GACTTGGGTTGCCAGCGTTCTTTTCTGCGCATGTGTATGCTTTGGAAACA
TTGGCCGGCAGCTTGCCATTGGAGTCCAGCGCGAGTCGCTCAAGTGAATG
TCTGACGAGCCTACGATCCTTCGCCCGCGTCCGCGACGTGTGTTCGATCT
CACGCCTGAAGAGCCCTCTACCCCAGTCGAACCCGCCAACCCAGACCTGC
TCGTCCCTAAAGATGCCGGCTCTACCAGCGTCAGCCGCAATGCTTCGATC
ATGAACTTGACCTCGTCGACGCTGTACGGTATTTACTCTCCTACTGCATT
CGACAGTTCTCGTGACGACTCGAGTCCCTGGGGCACGGAAGCCCATACGC
CTCAGTCAGGAAGCCCGAGGATCCAGTCTGAAGCTCCAGCACCAGGCAAA
CTTCGGCGGACACGATCACGGCTTAGCCACGGCCTGTTTCGAGGCGTCAT
CCTTCCGCAAGCGCTGAAGAGCGCTTTCCTCTTGGGCTTTGGTGTTGTTT
ATGGAGTCATTACAATTCACCTGCATGAAAACCATTGGATTACCCCGGTG
AAGTTGGAGAATACACATTACTACGGATCATGGCAGTATCTTGCTTTCTG
GGGTGTGGCCGGCGCCGTTTTGGGCAATATTCTTCCTTGGTTCGACCAGT
TCTCAGATGAAATTATTGGCAGCCCTAAGCAGGCAAAAGGGTCAAGCGAC
CCCGAGACTGCAGACCGTACTCTCTCATGGGTTTCAGTGGTTCGCAGCGT
TGGCGCGTTTGTGGGAATTGCATTTGCCATGCGCCGACTTCCCTGGGAAT
CTACAACTCAAGCGTCACTTACCCTCGCGCTCGTGAACCCCGTACTCTGG
TACCTCATCGACCGCACACGGACCGGCTTCGTCTTATCGACCGTTGTTGG
ATTGGCCGGCATGGGAATAATATTGGGACTCAAGCCTGACTTAATTCCGT
CTGCAGAGACTTCGGCTTTTGCAGCAAGCAAATTCGATGTCACCGGTTGG
GGATATGGGCTGGCTGTTGAGATGTCACAGGAAAGCATAGCAGTAAGGAC
TTGGGTTGCCAGCGTTCTTTTCTGCGCATGTGTATGCTTTGGAAACATTG
GCCGGCAGCTTGCCATTGGAGTCCAGCGCGAGTCGCTCAAGTGA back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008515-T1.utr5p1 | KJC3_008515-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008515-T1.utr3p1 | KJC3_008515-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR025929 |
| DBxref | PFAM:PF07281 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:2273749..2275911 + |
|
