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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:2357240..2358657- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008548-T1 ID=KJC3_008548-T1|Name=KJC3_008548-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1418bp|location=Sequence derived from alignment at ch6:2357240..2358657- (Aspergillus niger KJC3)
ATGGTTATGGCACCGACTGCTTGTGTACCTGCTGAAGTATGCACTCCTAA
ATACTACCAGGAGAAACACGACTATAATCTCAATTGGGATCATGGTCAAT
TCAGCAATCATGGAGGGGACGATTTATCGCAATCTAGGTTGGCTGCCAAG
GAACTAGTCTTGGACATCCTGAAGAAGCGCGCAGCTGAGGTCAATGTGGA
CAGCTGCGCGCCAGGAGAGGAGGACCCGTTTTACGTGGCAGATATGGGGG
AGGTCTACCGCCAGCATCTGCGCTGGAAAATGAACTTGAGCCGTGTTCGG
CCTTTCTACGGTAAGGATATGAATGCACAACTGGGATTTTCATGACAGCG
GCTAACAGTGAGTCAATAGCGGTCAAGTGCAACCCCGACCCGGAGATCCT
TCGCCTCATGGCTAAACTCGGAAACGGTTTTGATTGTGCGTCCAAGGCCG
AGATCGATATGGCCCTCGAGACCGGCGTCGACCCAAGCCGCATCATCTAC
GCGCAGCCCTGCAAGACCAAGTCCTATCTGCGCTACGCCGCCCAGGTGGG
CGTCAAGCAGATGACCTTTGACAACGCCGACGAGCTGTACAAGATCAAGG
CCAACTACCCGGACGCCGAGCTTTATCTGCGCATCCTCACGGATGATTCG
AACAGCTTGTGCCAGTTCAGCATGAAATTCGGAGCTTCCTTGGACGTTGC
TCGCCAGCTCCTCGAATTGGCGCACCAGCTCGAGCTGAAGGTGGTCGGCG
TGAGTTTTCACGTCGGATCAGGCGCTGAGGATCCTAAGGCTTTCCTGAAA
GCCGTGCAGGACGCGCGCCTTGTGTTTGATCAAGCCGCAGAGATTGGCCA
CGAACTGCACACTTTGGATGTCGGCGGAGGTTTCTCCCAGGACACTTTTG
AGAAATTCGCCGGCGTCCTGAGCGAGGCGTTGGAGACCTATTTCCCGCCC
AACATCCGGGTCATTGCCGAACCGGGTCGCTACTATGTTGCCAATGCGTT
CACTCTGGCGGCCAACATCATTGCTCGCCGTGAGGTGCGCGACCCGGAGG
ACCCGGCCAACGACGCCTACATGCTGTATCTCAACGACGGGGTGTATGGA
AACTTCTCCAACATCATCTTTGACCACCAGCACCCCGTGGCCCAGGTCCT
GACCTGTGCGTCGGCCGCTAACTCCCCTTATGCTGCGACTTCGGGGGGTG
TCACGTACTCCATCTGGGGGCCGACCTGTGACGGCATTGATGTTATCTCC
AAGCGCATTGCGCTGCCAGCTCTGCTGGAAGTTGGAGATTGGCTTTACTT
CGAGGAGATGGGAGCCTACACCAAGTGTAGCGCGACCCGCTTCAACGGCT
TTTCGGACAACCACGAGGTGATCTACATCTCCAGCGAAGCCGGGGCTTCT
GCGCTCCTCGAGTATTAG back to topCoding sequence (CDS) from alignment at ch6:2357240..2358657- >KJC3_008548-T1 ID=KJC3_008548-T1|Name=KJC3_008548-T1|organism=Aspergillus niger KJC3|type=CDS|length=2718bp|location=Sequence derived from alignment at ch6:2357240..2358657- (Aspergillus niger KJC3)
CGGTCAAGTGCAACCCCGACCCGGAGATCCTTCGCCTCATGGCTAAACTC
GGAAACGGTTTTGATTGTGCGTCCAAGGCCGAGATCGATATGGCCCTCGA
GACCGGCGTCGACCCAAGCCGCATCATCTACGCGCAGCCCTGCAAGACCA
AGTCCTATCTGCGCTACGCCGCCCAGGTGGGCGTCAAGCAGATGACCTTT
GACAACGCCGACGAGCTGTACAAGATCAAGGCCAACTACCCGGACGCCGA
GCTTTATCTGCGCATCCTCACGGATGATTCGAACAGCTTGTGCCAGTTCA
GCATGAAATTCGGAGCTTCCTTGGACGTTGCTCGCCAGCTCCTCGAATTG
GCGCACCAGCTCGAGCTGAAGGTGGTCGGCGTGAGTTTTCACGTCGGATC
AGGCGCTGAGGATCCTAAGGCTTTCCTGAAAGCCGTGCAGGACGCGCGCC
TTGTGTTTGATCAAGCCGCAGAGATTGGCCACGAACTGCACACTTTGGAT
GTCGGCGGAGGTTTCTCCCAGGACACTTTTGAGAAATTCGCCGGCGTCCT
GAGCGAGGCGTTGGAGACCTATTTCCCGCCCAACATCCGGGTCATTGCCG
AACCGGGTCGCTACTATGTTGCCAATGCGTTCACTCTGGCGGCCAACATC
ATTGCTCGCCGTGAGGTGCGCGACCCGGAGGACCCGGCCAACGACGCCTA
CATGCTGTATCTCAACGACGGGGTGTATGGAAACTTCTCCAACATCATCT
TTGACCACCAGCACCCCGTGGCCCAGGTCCTGACCTGTGCGTCGGCCGCT
AACTCCCCTTATGCTGCGACTTCGGGGGGTGTCACGTACTCCATCTGGGG
GCCGACCTGTGACGGCATTGATGTTATCTCCAAGCGCATTGCGCTGCCAG
CTCTGCTGGAAGTTGGAGATTGGCTTTACTTCGAGGAGATGGGAGCCTAC
ACCAAGTGTAGCGCGACCCGCTTCAACGGCTTTTCGGACAACCACGAGGT
GATCTACATCTCCAGCGAAGCCGGGGCTTCTGCGCTCCTCGAGTATTAGA
TGGTTATGGCACCGACTGCTTGTGTACCTGCTGAAGTATGCACTCCTAAA
TACTACCAGGAGAAACACGACTATAATCTCAATTGGGATCATGGTCAATT
CAGCAATCATGGAGGGGACGATTTATCGCAATCTAGGTTGGCTGCCAAGG
AACTAGTCTTGGACATCCTGAAGAAGCGCGCAGCTGAGGTCAATGTGGAC
AGCTGCGCGCCAGGAGAGGAGGACCCGTTTTACGTGGCAGATATGGGGGA
GGTCTACCGCCAGCATCTGCGCTGGAAAATGAACTTGAGCCGTGTTCGGC
CTTTCTACGCGGTCAAGTGCAACCCCGACCCGGAGATCCTTCGCCTCATG
GCTAAACTCGGAAACGGTTTTGATTGTGCGTCCAAGGCCGAGATCGATAT
GGCCCTCGAGACCGGCGTCGACCCAAGCCGCATCATCTACGCGCAGCCCT
GCAAGACCAAGTCCTATCTGCGCTACGCCGCCCAGGTGGGCGTCAAGCAG
ATGACCTTTGACAACGCCGACGAGCTGTACAAGATCAAGGCCAACTACCC
GGACGCCGAGCTTTATCTGCGCATCCTCACGGATGATTCGAACAGCTTGT
GCCAGTTCAGCATGAAATTCGGAGCTTCCTTGGACGTTGCTCGCCAGCTC
CTCGAATTGGCGCACCAGCTCGAGCTGAAGGTGGTCGGCGTGAGTTTTCA
CGTCGGATCAGGCGCTGAGGATCCTAAGGCTTTCCTGAAAGCCGTGCAGG
ACGCGCGCCTTGTGTTTGATCAAGCCGCAGAGATTGGCCACGAACTGCAC
ACTTTGGATGTCGGCGGAGGTTTCTCCCAGGACACTTTTGAGAAATTCGC
CGGCGTCCTGAGCGAGGCGTTGGAGACCTATTTCCCGCCCAACATCCGGG
TCATTGCCGAACCGGGTCGCTACTATGTTGCCAATGCGTTCACTCTGGCG
GCCAACATCATTGCTCGCCGTGAGGTGCGCGACCCGGAGGACCCGGCCAA
CGACGCCTACATGCTGTATCTCAACGACGGGGTGTATGGAAACTTCTCCA
ACATCATCTTTGACCACCAGCACCCCGTGGCCCAGGTCCTGACCTGTGCG
TCGGCCGCTAACTCCCCTTATGCTGCGACTTCGGGGGGTGTCACGTACTC
CATCTGGGGGCCGACCTGTGACGGCATTGATGTTATCTCCAAGCGCATTG
CGCTGCCAGCTCTGCTGGAAGTTGGAGATTGGCTTTACTTCGAGGAGATG
GGAGCCTACACCAAGTGTAGCGCGACCCGCTTCAACGGCTTTTCGGACAA
CCACGAGGTGATCTACATCTCCAGCGAAGCCGGGGCTTCTGCGCTCCTCG
AGTATTAGATGGTTATGGCACCGACTGCTTGTGTACCTGCTGAAGTATGC
ACTCCTAAATACTACCAGGAGAAACACGACTATAATCTCAATTGGGATCA
TGGTCAATTCAGCAATCATGGAGGGGACGATTTATCGCAATCTAGGTTGG
CTGCCAAGGAACTAGTCTTGGACATCCTGAAGAAGCGCGCAGCTGAGGTC
AATGTGGACAGCTGCGCGCCAGGAGAGGAGGACCCGTTTTACGTGGCAGA
TATGGGGGAGGTCTACCGCCAGCATCTGCGCTGGAAAATGAACTTGAGCC
GTGTTCGGCCTTTCTACG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006596 | polyamine biosynthetic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09261V03 |
| DBxref | InterPro:IPR022653 |
| DBxref | InterPro:IPR022657 |
| DBxref | InterPro:IPR029066 |
| DBxref | InterPro:IPR022644 |
| DBxref | InterPro:IPR009006 |
| DBxref | InterPro:IPR022643 |
| DBxref | InterPro:IPR002433 |
| DBxref | InterPro:IPR000183 |
| DBxref | PFAM:PF00278 |
| DBxref | PFAM:PF02784 |
| Product | Ornithine decarboxylase |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:2357240..2358657 - |
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