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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:2404779..2407149- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008568-T1 ID=KJC3_008568-T1|Name=KJC3_008568-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2371bp|location=Sequence derived from alignment at ch6:2404779..2407149- (Aspergillus niger KJC3)
GATTTTTCTGGTTATCGGGATTTTCTCCAATCTTCAACCCGCAACACTTG
CACCAGAACTGTCGCAAACATGGCTAAGATCAAGAAGAAGGGTACATACA
CTCATGATTTTCATGCGACAATTTCATGCTAACAATCCCTTTTTTTTTTC
AGGAACCTCTGGCCAGGCCAAAAACTTTATTACCAGAACCCAGGCCGTGC
GCAAACTTCAGATTTCCCTCCCGGATTTCCGTCGACTATGTATCTTCAAG
GGTATGCATATCCTATTGGTGGACTGAGGCATTGAGACATATACACGGTG
CTGATTCTTCTTCTTGTCGGAAAACAGGAATTTATCCCCGTGAGCCCCGG
AGCAAGAAGAAGGCCTCCAAGACCTCCACTCCCAACACCACTTTCTACTA
CACGAAAGATATTCAGTTCCTCCTCCATGAGCCTCTCCTGAGAAAGTTTC
GTGACCAAAAGGCGCTTGCGAAGAAGATTGCCCGCTCCCTTGGACGTGGT
GAAGTCTCAGATGCGTCCCGTCTGGAGAAGAACCACGCGCCGAAACTCAC
CTTGGATCACATCATCAAGGAGCGCTACCCGACCTTCATTGACGCTCTGA
GAGATCTTGACGATGCCCTGTCTCTGCTGTTCCTCTTTGCCAACCTCCCC
TCTTCTCCCCATGTCCCAGCCAAGACCATCGCTCTCTGCCAGCGGGTTAC
CCACGAGTTCCAGCACTACCTGATCACCACGAACTCCCTGCGCAAATCTT
TCCTGTCGATCAAGGGTATCTACTACCAGGCAACCATCCAGGGACAGGAC
ATCATGTGGCTTGTGCCCTACCGCTTCGTGCAGCGTGTCAACGGCGACGT
CGACTACCGTATCATGGCCACTTTCGTCGACTTCTACACCACTCTGCTCG
GATTCGTCAACTACCGTCTTTACTCGACTCTTGGCCTTCGCTATCCCCCC
AAGTTCGATAAGAGGAGTGACGAGAATGGTGCTGAGTTGGCGGCTTTCAC
TCTGGAGGGCCGCACCGTCGGCGAAACCCCCAAGGCTCTCGAAGCCAACA
AGCAGGCGAGCAAGCCTTCCAACCAGGAAGTCTCTAAGGAGGTTCAGGCC
AAGGTCGACAAGGTCATCAAGACCGCAGGCTTGGATCAGACGAAAGACGA
GCAAGTTACCGAGACAACCGAAGAAGCTTCCGAGGCGATCGATAAATTCG
AGCCTACTGCCCCCGAGGCCGACACTCTGCCCCAGCCCGACTTGAGCGGA
GATGAGGCTGGCTCTCTGTTCGCACCTTTCGTTTTCTACATCTCCCGTGA
GGCTCCCAAGGCGCCCCTGGAGTTCATCCTCCGCTCCTTCGGCTGCAGCA
GGATCGGCTGGGACGCTGTCCTTGGCGACGGAGCTTTCACCCACGATGAG
ACGGATACTCGCATCACCCACCAGATTGTCGATCGTCCTTCTTTGCCCGA
GTCTTCGCTGCCCGCTATCCCTGCTGCTTCGACAGAGGGCGCTGCTCAGA
AGGTCAGACCGGGAACCCGCATCCCCGGCAGAACCTATGTCCAGCCCCAA
TGGGTGTGGGACTGCATCAACGAGGGCAAGCTCCTCCGTGCTGATCTGTA
CGCCCCAGGCGCTACTCTCCCCCCTCATTTGAGCCCTTGGGTCAAGCCTT
CCAAGGGTGGCTATGACCCTCGCGCCAGCTTGGCTGAGCAGGAGGAGGAA
GGTGAGGCAGAGCTGGACGAAGACAGCGACGAGGAGATGGAGGAAGCCGC
TGATGAGGAGAAGGCTGAGGCCAAGGATGAGGAGTCCGAGGCTGAAAGCG
AGGAAGAGGATGATATCAACGGTGGCATGGATGTTGCTGAGACTGATGAG
GACGAGAGTGAGAGCGAGGAAGAGGACGAGGACTTTGGCGGATTCGATGA
CAACGAGGCCGCCTCTGAGTCTGATGAAGAGGAAGCCGCCCGGACACAGC
ACCAGAAGGAACTGGAGGCTGAGGCTGCTGGTCTTCCCTTCTCGTCTGGT
GGCGGTGCTGGCGAAGCAGCCAAGAAGAAGTCCGCTCAGGCTAAGAAGAT
CGCCTCCAAGAAGCGCAAGGAGGAGGAAGAGCTGGAGAGACAGAAGATGA
TGATGAGCCGGAAGAAGCGCAAGCTCCTCGAAAAGATGATGTACTCGAAC
AAGCAGAAGTCTGAGGAGGCTGCCAAGCTGCGGTCCAAGAGGAGAAAGCT
TGAGAAGGAGGGCCAGAAATGAAGTTAGGCACATAAAAGTTGGCTTTTCT
GTGACAATAGAATGATATCCTGCTGGGATTTGGAAGCATTCCTATATTGG
CGTCTTGAATCTTGTATTTACCATAGCATTCAGTTAGAGTGTTGTCTAAT
AAGTATACACGTCTACCGTTT back to topCoding sequence (CDS) from alignment at ch6:2404779..2407149- >KJC3_008568-T1 ID=KJC3_008568-T1|Name=KJC3_008568-T1|organism=Aspergillus niger KJC3|type=CDS|length=6048bp|location=Sequence derived from alignment at ch6:2404779..2407149- (Aspergillus niger KJC3)
GAATTTATCCCCGTGAGCCCCGGAGCAAGAAGAAGGCCTCCAAGACCTCC
ACTCCCAACACCACTTTCTACTACACGAAAGATATTCAGTTCCTCCTCCA
TGAGCCTCTCCTGAGAAAGTTTCGTGACCAAAAGGCGCTTGCGAAGAAGA
TTGCCCGCTCCCTTGGACGTGGTGAAGTCTCAGATGCGTCCCGTCTGGAG
AAGAACCACGCGCCGAAACTCACCTTGGATCACATCATCAAGGAGCGCTA
CCCGACCTTCATTGACGCTCTGAGAGATCTTGACGATGCCCTGTCTCTGC
TGTTCCTCTTTGCCAACCTCCCCTCTTCTCCCCATGTCCCAGCCAAGACC
ATCGCTCTCTGCCAGCGGGTTACCCACGAGTTCCAGCACTACCTGATCAC
CACGAACTCCCTGCGCAAATCTTTCCTGTCGATCAAGGGTATCTACTACC
AGGCAACCATCCAGGGACAGGACATCATGTGGCTTGTGCCCTACCGCTTC
GTGCAGCGTGTCAACGGCGACGTCGACTACCGTATCATGGCCACTTTCGT
CGACTTCTACACCACTCTGCTCGGATTCGTCAACTACCGTCTTTACTCGA
CTCTTGGCCTTCGCTATCCCCCCAAGTTCGATAAGAGGAGTGACGAGAAT
GGTGCTGAGTTGGCGGCTTTCACTCTGGAGGGCCGCACCGTCGGCGAAAC
CCCCAAGGCTCTCGAAGCCAACAAGCAGGCGAGCAAGCCTTCCAACCAGG
AAGTCTCTAAGGAGGTTCAGGCCAAGGTCGACAAGGTCATCAAGACCGCA
GGCTTGGATCAGACGAAAGACGAGCAAGTTACCGAGACAACCGAAGAAGC
TTCCGAGGCGATCGATAAATTCGAGCCTACTGCCCCCGAGGCCGACACTC
TGCCCCAGCCCGACTTGAGCGGAGATGAGGCTGGCTCTCTGTTCGCACCT
TTCGTTTTCTACATCTCCCGTGAGGCTCCCAAGGCGCCCCTGGAGTTCAT
CCTCCGCTCCTTCGGCTGCAGCAGGATCGGCTGGGACGCTGTCCTTGGCG
ACGGAGCTTTCACCCACGATGAGACGGATACTCGCATCACCCACCAGATT
GTCGATCGTCCTTCTTTGCCCGAGTCTTCGCTGCCCGCTATCCCTGCTGC
TTCGACAGAGGGCGCTGCTCAGAAGGTCAGACCGGGAACCCGCATCCCCG
GCAGAACCTATGTCCAGCCCCAATGGGTGTGGGACTGCATCAACGAGGGC
AAGCTCCTCCGTGCTGATCTGTACGCCCCAGGCGCTACTCTCCCCCCTCA
TTTGAGCCCTTGGGTCAAGCCTTCCAAGGGTGGCTATGACCCTCGCGCCA
GCTTGGCTGAGCAGGAGGAGGAAGGTGAGGCAGAGCTGGACGAAGACAGC
GACGAGGAGATGGAGGAAGCCGCTGATGAGGAGAAGGCTGAGGCCAAGGA
TGAGGAGTCCGAGGCTGAAAGCGAGGAAGAGGATGATATCAACGGTGGCA
TGGATGTTGCTGAGACTGATGAGGACGAGAGTGAGAGCGAGGAAGAGGAC
GAGGACTTTGGCGGATTCGATGACAACGAGGCCGCCTCTGAGTCTGATGA
AGAGGAAGCCGCCCGGACACAGCACCAGAAGGAACTGGAGGCTGAGGCTG
CTGGTCTTCCCTTCTCGTCTGGTGGCGGTGCTGGCGAAGCAGCCAAGAAG
AAGTCCGCTCAGGCTAAGAAGATCGCCTCCAAGAAGCGCAAGGAGGAGGA
AGAGCTGGAGAGACAGAAGATGATGATGAGCCGGAAGAAGCGCAAGCTCC
TCGAAAAGATGATGTACTCGAACAAGCAGAAGTCTGAGGAGGCTGCCAAG
CTGCGGTCCAAGAGGAGAAAGCTTGAGAAGGAGGGCCAGAAATGAGAACC
TCTGGCCAGGCCAAAAACTTTATTACCAGAACCCAGGCCGTGCGCAAACT
TCAGATTTCCCTCCCGGATTTCCGTCGACTATGTATCTTCAAGGATGGCT
AAGATCAAGAAGAAGGGAATTTATCCCCGTGAGCCCCGGAGCAAGAAGAA
GGCCTCCAAGACCTCCACTCCCAACACCACTTTCTACTACACGAAAGATA
TTCAGTTCCTCCTCCATGAGCCTCTCCTGAGAAAGTTTCGTGACCAAAAG
GCGCTTGCGAAGAAGATTGCCCGCTCCCTTGGACGTGGTGAAGTCTCAGA
TGCGTCCCGTCTGGAGAAGAACCACGCGCCGAAACTCACCTTGGATCACA
TCATCAAGGAGCGCTACCCGACCTTCATTGACGCTCTGAGAGATCTTGAC
GATGCCCTGTCTCTGCTGTTCCTCTTTGCCAACCTCCCCTCTTCTCCCCA
TGTCCCAGCCAAGACCATCGCTCTCTGCCAGCGGGTTACCCACGAGTTCC
AGCACTACCTGATCACCACGAACTCCCTGCGCAAATCTTTCCTGTCGATC
AAGGGTATCTACTACCAGGCAACCATCCAGGGACAGGACATCATGTGGCT
TGTGCCCTACCGCTTCGTGCAGCGTGTCAACGGCGACGTCGACTACCGTA
TCATGGCCACTTTCGTCGACTTCTACACCACTCTGCTCGGATTCGTCAAC
TACCGTCTTTACTCGACTCTTGGCCTTCGCTATCCCCCCAAGTTCGATAA
GAGGAGTGACGAGAATGGTGCTGAGTTGGCGGCTTTCACTCTGGAGGGCC
GCACCGTCGGCGAAACCCCCAAGGCTCTCGAAGCCAACAAGCAGGCGAGC
AAGCCTTCCAACCAGGAAGTCTCTAAGGAGGTTCAGGCCAAGGTCGACAA
GGTCATCAAGACCGCAGGCTTGGATCAGACGAAAGACGAGCAAGTTACCG
AGACAACCGAAGAAGCTTCCGAGGCGATCGATAAATTCGAGCCTACTGCC
CCCGAGGCCGACACTCTGCCCCAGCCCGACTTGAGCGGAGATGAGGCTGG
CTCTCTGTTCGCACCTTTCGTTTTCTACATCTCCCGTGAGGCTCCCAAGG
CGCCCCTGGAGTTCATCCTCCGCTCCTTCGGCTGCAGCAGGATCGGCTGG
GACGCTGTCCTTGGCGACGGAGCTTTCACCCACGATGAGACGGATACTCG
CATCACCCACCAGATTGTCGATCGTCCTTCTTTGCCCGAGTCTTCGCTGC
CCGCTATCCCTGCTGCTTCGACAGAGGGCGCTGCTCAGAAGGTCAGACCG
GGAACCCGCATCCCCGGCAGAACCTATGTCCAGCCCCAATGGGTGTGGGA
CTGCATCAACGAGGGCAAGCTCCTCCGTGCTGATCTGTACGCCCCAGGCG
CTACTCTCCCCCCTCATTTGAGCCCTTGGGTCAAGCCTTCCAAGGGTGGC
TATGACCCTCGCGCCAGCTTGGCTGAGCAGGAGGAGGAAGGTGAGGCAGA
GCTGGACGAAGACAGCGACGAGGAGATGGAGGAAGCCGCTGATGAGGAGA
AGGCTGAGGCCAAGGATGAGGAGTCCGAGGCTGAAAGCGAGGAAGAGGAT
GATATCAACGGTGGCATGGATGTTGCTGAGACTGATGAGGACGAGAGTGA
GAGCGAGGAAGAGGACGAGGACTTTGGCGGATTCGATGACAACGAGGCCG
CCTCTGAGTCTGATGAAGAGGAAGCCGCCCGGACACAGCACCAGAAGGAA
CTGGAGGCTGAGGCTGCTGGTCTTCCCTTCTCGTCTGGTGGCGGTGCTGG
CGAAGCAGCCAAGAAGAAGTCCGCTCAGGCTAAGAAGATCGCCTCCAAGA
AGCGCAAGGAGGAGGAAGAGCTGGAGAGACAGAAGATGATGATGAGCCGG
AAGAAGCGCAAGCTCCTCGAAAAGATGATGTACTCGAACAAGCAGAAGTC
TGAGGAGGCTGCCAAGCTGCGGTCCAAGAGGAGAAAGCTTGAGAAGGAGG
GCCAGAAATGAGAACCTCTGGCCAGGCCAAAAACTTTATTACCAGAACCC
AGGCCGTGCGCAAACTTCAGATTTCCCTCCCGGATTTCCGTCGACTATGT
ATCTTCAAGGATGGCTAAGATCAAGAAGAAGGGAATTTATCCCCGTGAGC
CCCGGAGCAAGAAGAAGGCCTCCAAGACCTCCACTCCCAACACCACTTTC
TACTACACGAAAGATATTCAGTTCCTCCTCCATGAGCCTCTCCTGAGAAA
GTTTCGTGACCAAAAGGCGCTTGCGAAGAAGATTGCCCGCTCCCTTGGAC
GTGGTGAAGTCTCAGATGCGTCCCGTCTGGAGAAGAACCACGCGCCGAAA
CTCACCTTGGATCACATCATCAAGGAGCGCTACCCGACCTTCATTGACGC
TCTGAGAGATCTTGACGATGCCCTGTCTCTGCTGTTCCTCTTTGCCAACC
TCCCCTCTTCTCCCCATGTCCCAGCCAAGACCATCGCTCTCTGCCAGCGG
GTTACCCACGAGTTCCAGCACTACCTGATCACCACGAACTCCCTGCGCAA
ATCTTTCCTGTCGATCAAGGGTATCTACTACCAGGCAACCATCCAGGGAC
AGGACATCATGTGGCTTGTGCCCTACCGCTTCGTGCAGCGTGTCAACGGC
GACGTCGACTACCGTATCATGGCCACTTTCGTCGACTTCTACACCACTCT
GCTCGGATTCGTCAACTACCGTCTTTACTCGACTCTTGGCCTTCGCTATC
CCCCCAAGTTCGATAAGAGGAGTGACGAGAATGGTGCTGAGTTGGCGGCT
TTCACTCTGGAGGGCCGCACCGTCGGCGAAACCCCCAAGGCTCTCGAAGC
CAACAAGCAGGCGAGCAAGCCTTCCAACCAGGAAGTCTCTAAGGAGGTTC
AGGCCAAGGTCGACAAGGTCATCAAGACCGCAGGCTTGGATCAGACGAAA
GACGAGCAAGTTACCGAGACAACCGAAGAAGCTTCCGAGGCGATCGATAA
ATTCGAGCCTACTGCCCCCGAGGCCGACACTCTGCCCCAGCCCGACTTGA
GCGGAGATGAGGCTGGCTCTCTGTTCGCACCTTTCGTTTTCTACATCTCC
CGTGAGGCTCCCAAGGCGCCCCTGGAGTTCATCCTCCGCTCCTTCGGCTG
CAGCAGGATCGGCTGGGACGCTGTCCTTGGCGACGGAGCTTTCACCCACG
ATGAGACGGATACTCGCATCACCCACCAGATTGTCGATCGTCCTTCTTTG
CCCGAGTCTTCGCTGCCCGCTATCCCTGCTGCTTCGACAGAGGGCGCTGC
TCAGAAGGTCAGACCGGGAACCCGCATCCCCGGCAGAACCTATGTCCAGC
CCCAATGGGTGTGGGACTGCATCAACGAGGGCAAGCTCCTCCGTGCTGAT
CTGTACGCCCCAGGCGCTACTCTCCCCCCTCATTTGAGCCCTTGGGTCAA
GCCTTCCAAGGGTGGCTATGACCCTCGCGCCAGCTTGGCTGAGCAGGAGG
AGGAAGGTGAGGCAGAGCTGGACGAAGACAGCGACGAGGAGATGGAGGAA
GCCGCTGATGAGGAGAAGGCTGAGGCCAAGGATGAGGAGTCCGAGGCTGA
AAGCGAGGAAGAGGATGATATCAACGGTGGCATGGATGTTGCTGAGACTG
ATGAGGACGAGAGTGAGAGCGAGGAAGAGGACGAGGACTTTGGCGGATTC
GATGACAACGAGGCCGCCTCTGAGTCTGATGAAGAGGAAGCCGCCCGGAC
ACAGCACCAGAAGGAACTGGAGGCTGAGGCTGCTGGTCTTCCCTTCTCGT
CTGGTGGCGGTGCTGGCGAAGCAGCCAAGAAGAAGTCCGCTCAGGCTAAG
AAGATCGCCTCCAAGAAGCGCAAGGAGGAGGAAGAGCTGGAGAGACAGAA
GATGATGATGAGCCGGAAGAAGCGCAAGCTCCTCGAAAAGATGATGTACT
CGAACAAGCAGAAGTCTGAGGAGGCTGCCAAGCTGCGGTCCAAGAGGAGA
AAGCTTGAGAAGGAGGGCCAGAAATGAGAACCTCTGGCCAGGCCAAAAAC
TTTATTACCAGAACCCAGGCCGTGCGCAAACTTCAGATTTCCCTCCCGGA
TTTCCGTCGACTATGTATCTTCAAGGATGGCTAAGATCAAGAAGAAGG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005730 | nucleolus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0042254 | ribosome biogenesis |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008568-T1.utr3p1 | KJC3_008568-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008568-T1.utr5p1 | KJC3_008568-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09261L4M |
| DBxref | InterPro:IPR001357 |
| DBxref | InterPro:IPR036420 |
| DBxref | InterPro:IPR010613 |
| DBxref | PFAM:PF06732 |
| Product | mRNA-binding ribosome synthesis protein nop7 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:2404779..2407149 - |
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