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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:2464434..2465485- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008595-T1 ID=KJC3_008595-T1|Name=KJC3_008595-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1052bp|location=Sequence derived from alignment at ch6:2464434..2465485- (Aspergillus niger KJC3)
TATAACCAGTCGGCCACAATCACTTCTGCAATTAAGATATCCAGATAGAG
CATTAACATAATCATATCCTGCAAACTCATTTTCTCAGTCCTCACATCCA
ACTGAACTCCCAAACATGGCCATCTCTCCCGACCAGAAAATAGCCGTGGT
CATCTGCACCGCCTCCTACCACACGCCCGCCCCCTACGGGCCCTTCATGG
AGGCCCTAACCTCTCACGGCCTCTTCGAGGCATACTGTCCCCAGCGCGCA
ACCTGCGACCTCAGTAAGCTGAACGTGGGCGACGACCTCCAACATCCGGA
CTTCAACCGCGATCCACCCGCAGGAGGGTATCCCAACGACCTGGACGATG
TGAAGATCGTTCACGAGCTACTCGATAAGCTGATAAACCAGGAAAACAAA
CTCGTCCTCCTCCTGGGCCATTCCTCCGGCGGGTTGGTGGCCACCCAAGC
AGCCATTCCCGAGCTACAGTTCAGGAACCGCGGGCCCCAAAAAGGAGGCG
TGATTGGCATCTTCTATGTCGCCGGGTTCCTGGTGCCCGTCGGCGAATCC
GTACATAGTTTCTTCCAGCCTAAGGATGGAAGTTGGCGCGTTCCCCCTTT
TGTTCAGTTCTATGTATGTATGCCCCTGCCCTCCTGTGACATGTCTCTTT
CAAGGACACTGACATGTTGTATCCAGAAAAACGGAAGAGACGGTCTAGCA
ACCACCAAAGAAACAGCTCAGTACATGTTCAAGGGCCTGGATGACCCTCA
AGCAGTCGAGAAGTGGACCGCCACGTTGACGGCCTCGCCTGTCAACACTG
GAGCCTTGACTAACGATGCTTACGCCGCTGTTCCATGTGCTTATGTGGTC
CTTGATGAGGATACTTGTCTGCCGCCAGCGTATCAGGAGAAGATGATTGC
TATGCATGCCCAGCGCGAAAGTGTAGACTTCAAGGTATATCATGCTCCGA
CGGGGCACTCGCCGCATCTGAGCTGGATGGAAGGCTTGGTGAGGACGGTG
GTTGAGTTCACGGAGGAGGTGCGGCGAGTTTGAGGTGTTGAAAGAGAATA
GG back to topCoding sequence (CDS) from alignment at ch6:2464434..2465485- >KJC3_008595-T1 ID=KJC3_008595-T1|Name=KJC3_008595-T1|organism=Aspergillus niger KJC3|type=CDS|length=1710bp|location=Sequence derived from alignment at ch6:2464434..2465485- (Aspergillus niger KJC3)
AAAAACGGAAGAGACGGTCTAGCAACCACCAAAGAAACAGCTCAGTACAT
GTTCAAGGGCCTGGATGACCCTCAAGCAGTCGAGAAGTGGACCGCCACGT
TGACGGCCTCGCCTGTCAACACTGGAGCCTTGACTAACGATGCTTACGCC
GCTGTTCCATGTGCTTATGTGGTCCTTGATGAGGATACTTGTCTGCCGCC
AGCGTATCAGGAGAAGATGATTGCTATGCATGCCCAGCGCGAAAGTGTAG
ACTTCAAGGTATATCATGCTCCGACGGGGCACTCGCCGCATCTGAGCTGG
ATGGAAGGCTTGGTGAGGACGGTGGTTGAGTTCACGGAGGAGGTGCGGCG
AGTTTGAATGGCCATCTCTCCCGACCAGAAAATAGCCGTGGTCATCTGCA
CCGCCTCCTACCACACGCCCGCCCCCTACGGGCCCTTCATGGAGGCCCTA
ACCTCTCACGGCCTCTTCGAGGCATACTGTCCCCAGCGCGCAACCTGCGA
CCTCAGTAAGCTGAACGTGGGCGACGACCTCCAACATCCGGACTTCAACC
GCGATCCACCCGCAGGAGGGTATCCCAACGACCTGGACGATGTGAAGATC
GTTCACGAGCTACTCGATAAGCTGATAAACCAGGAAAACAAACTCGTCCT
CCTCCTGGGCCATTCCTCCGGCGGGTTGGTGGCCACCCAAGCAGCCATTC
CCGAGCTACAGTTCAGGAACCGCGGGCCCCAAAAAGGAGGCGTGATTGGC
ATCTTCTATGTCGCCGGGTTCCTGGTGCCCGTCGGCGAATCCGTACATAG
TTTCTTCCAGCCTAAGGATGGAAGTTGGCGCGTTCCCCCTTTTGTTCAGT
TCTATAAAAACGGAAGAGACGGTCTAGCAACCACCAAAGAAACAGCTCAG
TACATGTTCAAGGGCCTGGATGACCCTCAAGCAGTCGAGAAGTGGACCGC
CACGTTGACGGCCTCGCCTGTCAACACTGGAGCCTTGACTAACGATGCTT
ACGCCGCTGTTCCATGTGCTTATGTGGTCCTTGATGAGGATACTTGTCTG
CCGCCAGCGTATCAGGAGAAGATGATTGCTATGCATGCCCAGCGCGAAAG
TGTAGACTTCAAGGTATATCATGCTCCGACGGGGCACTCGCCGCATCTGA
GCTGGATGGAAGGCTTGGTGAGGACGGTGGTTGAGTTCACGGAGGAGGTG
CGGCGAGTTTGAATGGCCATCTCTCCCGACCAGAAAATAGCCGTGGTCAT
CTGCACCGCCTCCTACCACACGCCCGCCCCCTACGGGCCCTTCATGGAGG
CCCTAACCTCTCACGGCCTCTTCGAGGCATACTGTCCCCAGCGCGCAACC
TGCGACCTCAGTAAGCTGAACGTGGGCGACGACCTCCAACATCCGGACTT
CAACCGCGATCCACCCGCAGGAGGGTATCCCAACGACCTGGACGATGTGA
AGATCGTTCACGAGCTACTCGATAAGCTGATAAACCAGGAAAACAAACTC
GTCCTCCTCCTGGGCCATTCCTCCGGCGGGTTGGTGGCCACCCAAGCAGC
CATTCCCGAGCTACAGTTCAGGAACCGCGGGCCCCAAAAAGGAGGCGTGA
TTGGCATCTTCTATGTCGCCGGGTTCCTGGTGCCCGTCGGCGAATCCGTA
CATAGTTTCTTCCAGCCTAAGGATGGAAGTTGGCGCGTTCCCCCTTTTGT
TCAGTTCTAT back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008595-T1.utr3p1 | KJC3_008595-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008595-T1.utr5p1 | KJC3_008595-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR029058 |
| DBxref | InterPro:IPR000073 |
| DBxref | PFAM:PF12697 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:2464434..2465485 - |
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