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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:2584363..2587000+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008640-T2 ID=KJC3_008640-T2|Name=KJC3_008640-T2|organism=Aspergillus niger KJC3|type=mRNA|length=2638bp|location=Sequence derived from alignment at ch6:2584363..2587000+ (Aspergillus niger KJC3) CAATCAGAGCTTCACCCATCGCGATCCTGTTATGATTCTTGCCCAGTGCG
TGCCTAGAACCGCGTCTTGTCGTGTCTAATTGTTCCTTTCGACTGCCGGA
AGACACAGTTGGTCGTACCTTGGTTAGTTTCCGTTGCTAACCTTTGTGAA
CACACATTATTTCATCGGTTCCTTCATAAGCTTTCCTATACTGGATTGAC
TGACTGGCTGGCTTCCACACTTCTAGGCGCGCCTGGATCCTCGTGTCCCA
ACTCCCCCAGCGCCTCCCCGCTGGCAGGCTCCTGACTGGCTGATCCCTTT
GTTGTCTTCATCTACTCTTGTCCTTTCCTGACCCTCCATTCGATCTTTGT
TCCGTCTCCCTCTTCCGTCTCCCCAAAATCTCCCGTGGATCTTATCGCGC
AGATAAATATCCCCCCATCAACCTATCAACCAAACATGGCACCCCAAAGG
AAACGCAAGTCGGAGAGCGCGTCAATCGCCGAGGAAACCGAGTCACCTGC
TGCGAAGAGAGTGGTAAGCCTTTCCTATCTACAAATTCGCCAATACTACC
CGCGAGGTAGCGCCTATCAAACCAGTCGGCCCGTCCAATACGCGATCGCC
GCCCACTGGCTAATCACGGTGTCATTCACGTCTCTTCTCCAATGATAGGA
AGCATCGATGTTACATCCAATGCACGAACAAACGATTATGTTCTCCCAGT
TTTACGTTCAAGCAATACTAATCATTTCTTATTTACATAGGCCGCGCCCG
ACACACCGGCTACCGGAGAAAAGAGAAAGAGGGGTCGTCCCAGGAAATAT
CCTGAGGGTAGTACTCCCAAGCGCCCTGACGGCCCCAAAAGAGGCCGTGG
CCGTCCTCGTAAAGATCCGAATGCCCGTCAGTTCCCTCTTCGTCCCATAA
TTATCTCTGATGCTCTTACGGACAACGCCCACACGATTTCTTTTGTCATT
CCAGCCTCCTATCAACGATGTGTTCGGTATGATATTATCTACAGCATTTG
CTGACATACACCAGCTACTCCCGCAAAATCTACAACCCCCAAGCAGGGCA
AACGGGGCAGGCCAAGGAAGAACCCGATCGAGAATGGAACCGAACCTACC
TCATCAACAACGAAACCAGAGACGATCGATACCACATCCTTCGAAGGACG
CTCATACTGGTTGATGAAGGCTGAACCGGAATCGCGATTAGAGAAAGGTG
TTGATGTAAAATTCTCCGTTGATGACTTGGCTTCTCGCAAGGAGCCGGAG
CCATGGGACGGTACGTTTCCATAATAGGGCCTTGAATGATTGACATGTCT
GCTGATCACCCAGTAGGTGTGCGTAACCCTGTTGGTAAGTGAGACCATTG
GCGGTGGCAAGCTAGCCTTCTGGCTTACAAGCGACATAGCACAAAAACAT
ATCCGTGACATGAAGAAGGGTGATCTCGCCTTCTTCTACCACTCCAACTG
CAAAGTACCAGGCATTGCGGGTATCATGGAGATTGTCCAGGAGCATTCAC
CAGATGGTTAGTCCTAACACGAGCCCTTTCTGGAAAGGACAAGGTCAGCT
AATACGGCGAGCATATTTAGAGTCAGCCTTCGACCCCGCCCACCCATACT
ACGACGAAAAGTCGAACCGAGACGATCCCAAGTGGCAGGTTGTGCACGTA
GAGTTCCGGCGCAAGTTCAACAAAATGATTACGCTGAACGATCTCAAATC
ATATGCACAGTCCGAGCGGGCTCTTGAAAATATGCAGGTGCTGAAGCAGT
CCCGGCTGAGTGTGACGCCAGTAAGCGTCACAGAATGGGCGTTTATCATG
CGGGTAGCGGACGAAAACGAGGCCAAGGCAAATGCCGAAGCTTCCAAGGA
TGACAGTGCCGAGGGCGACGAGCCCGAATCAAGCGAGTAAAGGATAAAGC
GATTTCATTGTGTTGCAGGGCTTCTGGGATGATCAACTTACTCTTGTGGG
AATTCGACACGCGCATTTTACTCTGTCATGTACAATCAAGGGAGTTTCTT
TCGGTGCAGCTGATGGTGCGGTGGAGTCACGTAGCAGGCGGGTTACAACG
GCAGCTTGTTTGGATGACATGTCATGATTCTGACCGGGGATGCTTTTATA
TTGCCACTAGTTGACGCATTATAGGCCTTGTAAACTAGCAGATCCCCTGG
CGAGAACATACCATACCTTCTAGACTCGGCAAAGAACATCTGTGGCTGTA
GCGACGCTTTGTGTCTTGACGGTTATCTGTCGTGCAACAAGTCGGAAATC
CATCACTGCTGGCGGTAGAAGGATATTCAACTGCTTCTGAATATCCGCGA
CAACTGCAACCTATTATTGAGTAATCGGGGAAGCGAGGGGTTTATGGCGA
GGATTCGGGGAGGGGCGACAAGGCTGGAAGACCCGGAAGAACCATGATTG
GGGATGGAAGATGCAAGCTGCATGCACATGAGGAGGGGAGAGCAGGTGGT
CCCGCTAGATGAGGGAAAGAAGTGCGGAGGAGCTGCAGAATCAAGCTTAT
CAAGCTGAGGTGATTAGTTTACTTCGCCGGTGGAGTTGCTGACCCAGAGA
TTGGAGACGCCGGCGAAAGGATGGGATCCAGAAGAGTAAGTGTATGCGAA
GAGGGGCTGCCCGAGCACCGCCGCGTCTCCCATTCGCT back to topCoding sequence (CDS) from alignment at ch6:2584363..2587000+ >KJC3_008640-T2 ID=KJC3_008640-T2|Name=KJC3_008640-T2|organism=Aspergillus niger KJC3|type=CDS|length=5202bp|location=Sequence derived from alignment at ch6:2584363..2587000+ (Aspergillus niger KJC3) ATGATAGGAAGCATCGATGTTACATCCAATGCCGCGCCCGACACACCGGC TACCGGAGAAAAGAGAAAGAGGGGTCGTCCCAGGAAATATCCTGAGGGTA GTACTCCCAAGCGCCCTGACGGCCCCAAAAGAGGCCGTGGCCGTCCTCGT AAAGATCCGAATGCCCCTACTCCCGCAAAATCTACAACCCCCAAGCAGGG CAAACGGGGCAGGCCAAGGAAGAACCCGATCGAGAATGGAACCGAACCTA CCTCATCAACAACGAAACCAGAGACGATCGATACCACATCCTTCGAAGGA CGCTCATACTGGTTGATGAAGGCTGAACCGGAATCGCGATTAGAGAAAGG TGTTGATGTAAAATTCTCCGTTGATGACTTGGCTTCTCGCAAGGAGCCGG AGCCATGGGACGGTGTGCGTAACCCTGTTGCACAAAAACATATCCGTGAC ATGAAGAAGGGTGATCTCGCCTTCTTCTACCACTCCAACTGCAAAGTACC AGGCATTGCGGGTATCATGGAGATTGTCCAGGAGCATTCACCAGATGAGT CAGCCTTCGACCCCGCCCACCCATACTACGACGAAAAGTCGAACCGAGAC GATCCCAAGTGGCAGGTTGTGCACGTAGAGTTCCGGCGCAAGTTCAACAA AATGATTACGCTGAACGATCTCAAATCATATGCACAGTCCGAGCGGGCTC TTGAAAATATGCAGGTGCTGAAGCAGTCCCGGCTGAGTGTGACGCCAGTA AGCGTCACAGAATGGGCGTTTATCATGCGGGTAGCGGACGAAAACGAGGC CAAGGCAAATGCCGAAGCTTCCAAGGATGACAGTGCCGAGGGCGACGAGC CCGAATCAAGCGAGTAAATGATAGGAAGCATCGATGTTACATCCAATGCC GCGCCCGACACACCGGCTACCGGAGAAAAGAGAAAGAGGGGTCGTCCCAG GAAATATCCTGAGGGTAGTACTCCCAAGCGCCCTGACGGCCCCAAAAGAG GCCGTGGCCGTCCTCGTAAAGATCCGAATGCCCCTACTCCCGCAAAATCT ACAACCCCCAAGCAGGGCAAACGGGGCAGGCCAAGGAAGAACCCGATCGA GAATGGAACCGAACCTACCTCATCAACAACGAAACCAGAGACGATCGATA CCACATCCTTCGAAGGACGCTCATACTGGTTGATGAAGGCTGAACCGGAA TCGCGATTAGAGAAAGGTGTTGATGTAAAATTCTCCGTTGATGACTTGGC TTCTCGCAAGGAGCCGGAGCCATGGGACGGTGTGCGTAACCCTGTTGCAC AAAAACATATCCGTGACATGAAGAAGGGTGATCTCGCCTTCTTCTACCAC TCCAACTGCAAAGTACCAGGCATTGCGGGTATCATGGAGATTGTCCAGGA GCATTCACCAGATGAGTCAGCCTTCGACCCCGCCCACCCATACTACGACG AAAAGTCGAACCGAGACGATCCCAAGTGGCAGGTTGTGCACGTAGAGTTC CGGCGCAAGTTCAACAAAATGATTACGCTGAACGATCTCAAATCATATGC ACAGTCCGAGCGGGCTCTTGAAAATATGCAGGTGCTGAAGCAGTCCCGGC TGAGTGTGACGCCAGTAAGCGTCACAGAATGGGCGTTTATCATGCGGGTA GCGGACGAAAACGAGGCCAAGGCAAATGCCGAAGCTTCCAAGGATGACAG TGCCGAGGGCGACGAGCCCGAATCAAGCGAGTAAATGATAGGAAGCATCG ATGTTACATCCAATGCCGCGCCCGACACACCGGCTACCGGAGAAAAGAGA AAGAGGGGTCGTCCCAGGAAATATCCTGAGGGTAGTACTCCCAAGCGCCC TGACGGCCCCAAAAGAGGCCGTGGCCGTCCTCGTAAAGATCCGAATGCCC CTACTCCCGCAAAATCTACAACCCCCAAGCAGGGCAAACGGGGCAGGCCA AGGAAGAACCCGATCGAGAATGGAACCGAACCTACCTCATCAACAACGAA ACCAGAGACGATCGATACCACATCCTTCGAAGGACGCTCATACTGGTTGA TGAAGGCTGAACCGGAATCGCGATTAGAGAAAGGTGTTGATGTAAAATTC TCCGTTGATGACTTGGCTTCTCGCAAGGAGCCGGAGCCATGGGACGGTGT GCGTAACCCTGTTGCACAAAAACATATCCGTGACATGAAGAAGGGTGATC TCGCCTTCTTCTACCACTCCAACTGCAAAGTACCAGGCATTGCGGGTATC ATGGAGATTGTCCAGGAGCATTCACCAGATGAGTCAGCCTTCGACCCCGC CCACCCATACTACGACGAAAAGTCGAACCGAGACGATCCCAAGTGGCAGG TTGTGCACGTAGAGTTCCGGCGCAAGTTCAACAAAATGATTACGCTGAAC GATCTCAAATCATATGCACAGTCCGAGCGGGCTCTTGAAAATATGCAGGT GCTGAAGCAGTCCCGGCTGAGTGTGACGCCAGTAAGCGTCACAGAATGGG CGTTTATCATGCGGGTAGCGGACGAAAACGAGGCCAAGGCAAATGCCGAA GCTTCCAAGGATGACAGTGCCGAGGGCGACGAGCCCGAATCAAGCGAGTA AATGATAGGAAGCATCGATGTTACATCCAATGCCGCGCCCGACACACCGG CTACCGGAGAAAAGAGAAAGAGGGGTCGTCCCAGGAAATATCCTGAGGGT AGTACTCCCAAGCGCCCTGACGGCCCCAAAAGAGGCCGTGGCCGTCCTCG TAAAGATCCGAATGCCCCTACTCCCGCAAAATCTACAACCCCCAAGCAGG GCAAACGGGGCAGGCCAAGGAAGAACCCGATCGAGAATGGAACCGAACCT ACCTCATCAACAACGAAACCAGAGACGATCGATACCACATCCTTCGAAGG ACGCTCATACTGGTTGATGAAGGCTGAACCGGAATCGCGATTAGAGAAAG GTGTTGATGTAAAATTCTCCGTTGATGACTTGGCTTCTCGCAAGGAGCCG GAGCCATGGGACGGTGTGCGTAACCCTGTTGCACAAAAACATATCCGTGA CATGAAGAAGGGTGATCTCGCCTTCTTCTACCACTCCAACTGCAAAGTAC CAGGCATTGCGGGTATCATGGAGATTGTCCAGGAGCATTCACCAGATGAG TCAGCCTTCGACCCCGCCCACCCATACTACGACGAAAAGTCGAACCGAGA CGATCCCAAGTGGCAGGTTGTGCACGTAGAGTTCCGGCGCAAGTTCAACA AAATGATTACGCTGAACGATCTCAAATCATATGCACAGTCCGAGCGGGCT CTTGAAAATATGCAGGTGCTGAAGCAGTCCCGGCTGAGTGTGACGCCAGT AAGCGTCACAGAATGGGCGTTTATCATGCGGGTAGCGGACGAAAACGAGG CCAAGGCAAATGCCGAAGCTTCCAAGGATGACAGTGCCGAGGGCGACGAG CCCGAATCAAGCGAGTAAATGATAGGAAGCATCGATGTTACATCCAATGC CGCGCCCGACACACCGGCTACCGGAGAAAAGAGAAAGAGGGGTCGTCCCA GGAAATATCCTGAGGGTAGTACTCCCAAGCGCCCTGACGGCCCCAAAAGA GGCCGTGGCCGTCCTCGTAAAGATCCGAATGCCCCTACTCCCGCAAAATC TACAACCCCCAAGCAGGGCAAACGGGGCAGGCCAAGGAAGAACCCGATCG AGAATGGAACCGAACCTACCTCATCAACAACGAAACCAGAGACGATCGAT ACCACATCCTTCGAAGGACGCTCATACTGGTTGATGAAGGCTGAACCGGA ATCGCGATTAGAGAAAGGTGTTGATGTAAAATTCTCCGTTGATGACTTGG CTTCTCGCAAGGAGCCGGAGCCATGGGACGGTGTGCGTAACCCTGTTGCA CAAAAACATATCCGTGACATGAAGAAGGGTGATCTCGCCTTCTTCTACCA CTCCAACTGCAAAGTACCAGGCATTGCGGGTATCATGGAGATTGTCCAGG AGCATTCACCAGATGAGTCAGCCTTCGACCCCGCCCACCCATACTACGAC GAAAAGTCGAACCGAGACGATCCCAAGTGGCAGGTTGTGCACGTAGAGTT CCGGCGCAAGTTCAACAAAATGATTACGCTGAACGATCTCAAATCATATG CACAGTCCGAGCGGGCTCTTGAAAATATGCAGGTGCTGAAGCAGTCCCGG CTGAGTGTGACGCCAGTAAGCGTCACAGAATGGGCGTTTATCATGCGGGT AGCGGACGAAAACGAGGCCAAGGCAAATGCCGAAGCTTCCAAGGATGACA GTGCCGAGGGCGACGAGCCCGAATCAAGCGAGTAAATGATAGGAAGCATC GATGTTACATCCAATGCCGCGCCCGACACACCGGCTACCGGAGAAAAGAG AAAGAGGGGTCGTCCCAGGAAATATCCTGAGGGTAGTACTCCCAAGCGCC CTGACGGCCCCAAAAGAGGCCGTGGCCGTCCTCGTAAAGATCCGAATGCC CCTACTCCCGCAAAATCTACAACCCCCAAGCAGGGCAAACGGGGCAGGCC AAGGAAGAACCCGATCGAGAATGGAACCGAACCTACCTCATCAACAACGA AACCAGAGACGATCGATACCACATCCTTCGAAGGACGCTCATACTGGTTG ATGAAGGCTGAACCGGAATCGCGATTAGAGAAAGGTGTTGATGTAAAATT CTCCGTTGATGACTTGGCTTCTCGCAAGGAGCCGGAGCCATGGGACGGTG TGCGTAACCCTGTTGCACAAAAACATATCCGTGACATGAAGAAGGGTGAT CTCGCCTTCTTCTACCACTCCAACTGCAAAGTACCAGGCATTGCGGGTAT CATGGAGATTGTCCAGGAGCATTCACCAGATGAGTCAGCCTTCGACCCCG CCCACCCATACTACGACGAAAAGTCGAACCGAGACGATCCCAAGTGGCAG GTTGTGCACGTAGAGTTCCGGCGCAAGTTCAACAAAATGATTACGCTGAA CGATCTCAAATCATATGCACAGTCCGAGCGGGCTCTTGAAAATATGCAGG TGCTGAAGCAGTCCCGGCTGAGTGTGACGCCAGTAAGCGTCACAGAATGG GCGTTTATCATGCGGGTAGCGGACGAAAACGAGGCCAAGGCAAATGCCGA AGCTTCCAAGGATGACAGTGCCGAGGGCGACGAGCCCGAATCAAGCGAGT AA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
Term | Definition |
GO:0000785 | chromatin |
GO:0005634 | nucleus |
Vocabulary: Biological Process
Term | Definition |
GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
Term | Definition |
GO:0003677 | DNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_008640-T2.utr3p1 | KJC3_008640-T2.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
Property Name | Value |
DBxref | InterPro:IPR015947 |
DBxref | InterPro:IPR002740 |
DBxref | InterPro:IPR017956 |
DBxref | InterPro:IPR000116 |
DBxref | PFAM:PF01878 |
DBxref | PFAM:PF02178 |
Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
ch6 | supercontig | ch6:2584363..2587000 + |
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