You are here

Home

KJC3_008668-T1, KJC3_008668-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_008668-T1
Unique NameKJC3_008668-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:2669686..2670909-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_008668-T1 ID=KJC3_008668-T1|Name=KJC3_008668-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1224bp|location=Sequence derived from alignment at ch6:2669686..2670909- (Aspergillus niger KJC3)
TGAATACCTTCATCATATCCTCCAACCATCATCATGGATCGCTCCAACAA
GCCTGCCGCCATCGGCGTCGGTGCCTCTCTTCCCCAACCCACCATCTCCC
TCCGCGACAACACCGTTGAAGCTACCCTCCCCACCGGCGAGTCCGTCACT
GTCCACCTCTACGGAGCCACCGTCACCTCCTGGAAGCTCGCCAATGGCAA
GGAACAGCTCTTCGTGAGCGAGAAGGCTCATCTAGATGGCTCCAAACCTA
TCCGGGGTGGTATTCCCGTCGTATTCCCGGTATGTCCCCTTCAAGCCAAT
GACTACTGAACCGCCAGCTTGCTTTCTACACCTCGCTCCAAGCATCCCAC
TGAAAGGCAAACAAACTAACTCCTATCTCCATCAAATCAGGTCTTCGGTC
CTCCTCCCTCCAATCACGCCACCTCTGCACTCCCTCAACACGGCTTTGCC
CGGAACTCGAACTGGGAATTCCTCGGCAAATCCTCGTCCGAAGCGTTCGG
CCGCGACCGGAAAGAAGGCGAAGACGCTGTGAAGTTGGACTTCGGATTGT
CGCATCCTATGCTGAGCGAGGAATTCCAGAAGGCCTGGCCGTATCAGTTT
GGATTGGTGTATAGCGTAACTTTGACAAAGGGGAGCCTGGAGACTTCTCT
GCAGGTGCAGAACCAGGGCGAGCAGAATTTCGATTTCCAGGTGTTGATGC
ACACGTATTTGAGTGTTGAGGTATGTCACAACCCAACTTCCGGGCTGTGG
TTAGGCTAATGAGGCATGGCAGGACATCTCCAACATCCGCGTTAAGAACC
TCCAGCAAAAGGAATACTTGGACAAGACACAGGGCGGTGCAGCTATCACG
GAGACTTCGGAGGCAGTGGAGATCAACAAGGAAACGGACCGTGTGTACAA
GGCATTGGATCCGAAGGTGCCGATTATCGTGTCCACGGTGTCGGATGATC
AGCCTCTGTTCTCGATCACAAGGGAGGCCTTGACGGATGTGGTGGTGTGG
AACCCCTGGATCGAGAAGGCCAAGGGTATGGCGGACTTTGGTCCCGATGA
GGCATACAAGAACATGCTTTGTGTCGAGGCCGGTTCTGTTGCTGGATGGC
AGACCCTGGAGGCAGGCGAATCTTGGGAAGGTGGACAGACTATCCGGCCC
CGGCTGTAGGTGGCATAGCAGGGTAGGATAAGTTTAACTTTACGTGAATA
ATCATGCAGTGACGATGAATGCCT
back to top

Coding sequence (CDS) from alignment at ch6:2669686..2670909-

>KJC3_008668-T1 ID=KJC3_008668-T1|Name=KJC3_008668-T1|organism=Aspergillus niger KJC3|type=CDS|length=2889bp|location=Sequence derived from alignment at ch6:2669686..2670909- (Aspergillus niger KJC3)
GACATCTCCAACATCCGCGTTAAGAACCTCCAGCAAAAGGAATACTTGGA
CAAGACACAGGGCGGTGCAGCTATCACGGAGACTTCGGAGGCAGTGGAGA
TCAACAAGGAAACGGACCGTGTGTACAAGGCATTGGATCCGAAGGTGCCG
ATTATCGTGTCCACGGTGTCGGATGATCAGCCTCTGTTCTCGATCACAAG
GGAGGCCTTGACGGATGTGGTGGTGTGGAACCCCTGGATCGAGAAGGCCA
AGGGTATGGCGGACTTTGGTCCCGATGAGGCATACAAGAACATGCTTTGT
GTCGAGGCCGGTTCTGTTGCTGGATGGCAGACCCTGGAGGCAGGCGAATC
TTGGGAAGGTGGACAGACTATCCGGCCCCGGCTGTAGGTCTTCGGTCCTC
CTCCCTCCAATCACGCCACCTCTGCACTCCCTCAACACGGCTTTGCCCGG
AACTCGAACTGGGAATTCCTCGGCAAATCCTCGTCCGAAGCGTTCGGCCG
CGACCGGAAAGAAGGCGAAGACGCTGTGAAGTTGGACTTCGGATTGTCGC
ATCCTATGCTGAGCGAGGAATTCCAGAAGGCCTGGCCGTATCAGTTTGGA
TTGGTGTATAGCGTAACTTTGACAAAGGGGAGCCTGGAGACTTCTCTGCA
GGTGCAGAACCAGGGCGAGCAGAATTTCGATTTCCAGGTGTTGATGCACA
CGTATTTGAGTGTTGAGATGGATCGCTCCAACAAGCCTGCCGCCATCGGC
GTCGGTGCCTCTCTTCCCCAACCCACCATCTCCCTCCGCGACAACACCGT
TGAAGCTACCCTCCCCACCGGCGAGTCCGTCACTGTCCACCTCTACGGAG
CCACCGTCACCTCCTGGAAGCTCGCCAATGGCAAGGAACAGCTCTTCGTG
AGCGAGAAGGCTCATCTAGATGGCTCCAAACCTATCCGGGGTGGTATTCC
CGTCGTATTCCCGGACATCTCCAACATCCGCGTTAAGAACCTCCAGCAAA
AGGAATACTTGGACAAGACACAGGGCGGTGCAGCTATCACGGAGACTTCG
GAGGCAGTGGAGATCAACAAGGAAACGGACCGTGTGTACAAGGCATTGGA
TCCGAAGGTGCCGATTATCGTGTCCACGGTGTCGGATGATCAGCCTCTGT
TCTCGATCACAAGGGAGGCCTTGACGGATGTGGTGGTGTGGAACCCCTGG
ATCGAGAAGGCCAAGGGTATGGCGGACTTTGGTCCCGATGAGGCATACAA
GAACATGCTTTGTGTCGAGGCCGGTTCTGTTGCTGGATGGCAGACCCTGG
AGGCAGGCGAATCTTGGGAAGGTGGACAGACTATCCGGCCCCGGCTGTAG
GTCTTCGGTCCTCCTCCCTCCAATCACGCCACCTCTGCACTCCCTCAACA
CGGCTTTGCCCGGAACTCGAACTGGGAATTCCTCGGCAAATCCTCGTCCG
AAGCGTTCGGCCGCGACCGGAAAGAAGGCGAAGACGCTGTGAAGTTGGAC
TTCGGATTGTCGCATCCTATGCTGAGCGAGGAATTCCAGAAGGCCTGGCC
GTATCAGTTTGGATTGGTGTATAGCGTAACTTTGACAAAGGGGAGCCTGG
AGACTTCTCTGCAGGTGCAGAACCAGGGCGAGCAGAATTTCGATTTCCAG
GTGTTGATGCACACGTATTTGAGTGTTGAGATGGATCGCTCCAACAAGCC
TGCCGCCATCGGCGTCGGTGCCTCTCTTCCCCAACCCACCATCTCCCTCC
GCGACAACACCGTTGAAGCTACCCTCCCCACCGGCGAGTCCGTCACTGTC
CACCTCTACGGAGCCACCGTCACCTCCTGGAAGCTCGCCAATGGCAAGGA
ACAGCTCTTCGTGAGCGAGAAGGCTCATCTAGATGGCTCCAAACCTATCC
GGGGTGGTATTCCCGTCGTATTCCCGGACATCTCCAACATCCGCGTTAAG
AACCTCCAGCAAAAGGAATACTTGGACAAGACACAGGGCGGTGCAGCTAT
CACGGAGACTTCGGAGGCAGTGGAGATCAACAAGGAAACGGACCGTGTGT
ACAAGGCATTGGATCCGAAGGTGCCGATTATCGTGTCCACGGTGTCGGAT
GATCAGCCTCTGTTCTCGATCACAAGGGAGGCCTTGACGGATGTGGTGGT
GTGGAACCCCTGGATCGAGAAGGCCAAGGGTATGGCGGACTTTGGTCCCG
ATGAGGCATACAAGAACATGCTTTGTGTCGAGGCCGGTTCTGTTGCTGGA
TGGCAGACCCTGGAGGCAGGCGAATCTTGGGAAGGTGGACAGACTATCCG
GCCCCGGCTGTAGGTCTTCGGTCCTCCTCCCTCCAATCACGCCACCTCTG
CACTCCCTCAACACGGCTTTGCCCGGAACTCGAACTGGGAATTCCTCGGC
AAATCCTCGTCCGAAGCGTTCGGCCGCGACCGGAAAGAAGGCGAAGACGC
TGTGAAGTTGGACTTCGGATTGTCGCATCCTATGCTGAGCGAGGAATTCC
AGAAGGCCTGGCCGTATCAGTTTGGATTGGTGTATAGCGTAACTTTGACA
AAGGGGAGCCTGGAGACTTCTCTGCAGGTGCAGAACCAGGGCGAGCAGAA
TTTCGATTTCCAGGTGTTGATGCACACGTATTTGAGTGTTGAGATGGATC
GCTCCAACAAGCCTGCCGCCATCGGCGTCGGTGCCTCTCTTCCCCAACCC
ACCATCTCCCTCCGCGACAACACCGTTGAAGCTACCCTCCCCACCGGCGA
GTCCGTCACTGTCCACCTCTACGGAGCCACCGTCACCTCCTGGAAGCTCG
CCAATGGCAAGGAACAGCTCTTCGTGAGCGAGAAGGCTCATCTAGATGGC
TCCAAACCTATCCGGGGTGGTATTCCCGTCGTATTCCCG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0030246carbohydrate binding
GO:0016853isomerase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_008668KJC3_008668Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008668-T1KJC3_008668-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008668-T1.cdsKJC3_008668-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008668-T1.utr3p1KJC3_008668-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008668-T1.exon3KJC3_008668-T1.exon3Aspergillus niger KJC3exon
KJC3_008668-T1.exon2KJC3_008668-T1.exon2Aspergillus niger KJC3exon
KJC3_008668-T1.exon1KJC3_008668-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008668-T1.utr5p1KJC3_008668-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR011013
DBxrefInterPro:IPR025532
DBxrefInterPro:IPR014718
DBxrefInterPro:IPR008183
DBxrefPFAM:PF01263
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:2669686..2670909 -
Powered by Drupal