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KJC3_008674-T1, KJC3_008674-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_008674-T1
Unique NameKJC3_008674-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:2682022..2683278-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_008674-T1 ID=KJC3_008674-T1|Name=KJC3_008674-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1257bp|location=Sequence derived from alignment at ch6:2682022..2683278- (Aspergillus niger KJC3)
ATGCCTCCTGCTCGTGATATCATGGCTCACCGGGGGGATGACGACGGTGA
GTCTATTGCTAATGACACTTGAATATTCACTGACTGCCAGCAGAGGTGTG
CCCTGTCTGCAAATCCTCCCGTTACCTGAACCCAGACATGCGATTTCTCA
TCAATCCCGAATGCTACCACAAGATGTGCGAGTCCTGCGTGGACCGAATC
TTCTCCTCAGGCCCTGCGAACTGTCCCGTGGCGGGCTGTCACAAGACCCT
GCGCAAGAACCGATTTCGCAAGCAGACATTCGAGGATATTAATGTGGAAA
GAGAGGTGGACATTCGGCGCAGAGTAATGCAAATGTATGCCAATATCAAA
TTTGCTAGACCCTGGAATAAGCCACTAATCTTCCTCTAGTCTTAACCGCC
GCGAAGAAGAGTTTGATTCGAAACGAGCCTATGATGACTTCCTCGAACAA
CGCGAAGAGATAATAGCGAACCTTGTCCATGGCACAGATGTGGCGAAGAC
AGAAAGCGACCTACAAAGATATGCTGCAGACAACATGCGGTCGATTCGCG
CCAATCAAGCCCTCGAAGCGCAAGAGGCCTCATCCTTCCGAGAACAACAA
ACACACGAACAAGAACTGGCACGTCTTCGGCGAGAGGCAGCTAGACTGGA
ATATGAGAACGAACGGAAGGAGATGCTTGCCGGCCGGGAAGACGTTCTCA
GCCGTCTTGCGGCAGGTCGACCTGGCGACGCAGCGGCTATCGCCCGCGAA
GGTCACAAGGTGCTGCTTAAGAAATCTTCTGCTCGCCGCAGTGAAGAAGA
CCGGATTCGACAGAAGCAGGCTGCTTTGCGCAGCTCAGATGCCAGGAAAG
CTGGGCAGGGCGCCCTTACCACGGCGGACAGGGCGGATGACAGTGGTGAT
TCTGGCTTGATCAAGGGTCTTAAGAAGATTGTGACGCCCGAGCCTGAGAA
GCCTTATGATCCTTTTGGTGGCCTTGTTCCCAACAAGAGGGACTACTATA
CTCTGCGCGACTATTACCCGAACAGCTATCTCGACCCCATTCGCCAGGAC
ACTCGTATGCAGGCTGGTGGATACGACCTTCAGGAATACTACTCGCGTAC
TTTGATGGAGGCCTTTGCGGGTTTGGGTTGCTTCATCGATGAGGAGGTGT
CTAAGCGAGAGGTTACAAGTACGATGGGTATCTCTAGACCCGTCGCTACA
GAAGGGGCTGCCTTGGCGGCTGTTTCAAGTGCAGGCGCCCCAGAAGCCAG
CTCGTGA
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Coding sequence (CDS) from alignment at ch6:2682022..2683278-

>KJC3_008674-T1 ID=KJC3_008674-T1|Name=KJC3_008674-T1|organism=Aspergillus niger KJC3|type=CDS|length=3465bp|location=Sequence derived from alignment at ch6:2682022..2683278- (Aspergillus niger KJC3)
TCTTAACCGCCGCGAAGAAGAGTTTGATTCGAAACGAGCCTATGATGACT
TCCTCGAACAACGCGAAGAGATAATAGCGAACCTTGTCCATGGCACAGAT
GTGGCGAAGACAGAAAGCGACCTACAAAGATATGCTGCAGACAACATGCG
GTCGATTCGCGCCAATCAAGCCCTCGAAGCGCAAGAGGCCTCATCCTTCC
GAGAACAACAAACACACGAACAAGAACTGGCACGTCTTCGGCGAGAGGCA
GCTAGACTGGAATATGAGAACGAACGGAAGGAGATGCTTGCCGGCCGGGA
AGACGTTCTCAGCCGTCTTGCGGCAGGTCGACCTGGCGACGCAGCGGCTA
TCGCCCGCGAAGGTCACAAGGTGCTGCTTAAGAAATCTTCTGCTCGCCGC
AGTGAAGAAGACCGGATTCGACAGAAGCAGGCTGCTTTGCGCAGCTCAGA
TGCCAGGAAAGCTGGGCAGGGCGCCCTTACCACGGCGGACAGGGCGGATG
ACAGTGGTGATTCTGGCTTGATCAAGGGTCTTAAGAAGATTGTGACGCCC
GAGCCTGAGAAGCCTTATGATCCTTTTGGTGGCCTTGTTCCCAACAAGAG
GGACTACTATACTCTGCGCGACTATTACCCGAACAGCTATCTCGACCCCA
TTCGCCAGGACACTCGTATGCAGGCTGGTGGATACGACCTTCAGGAATAC
TACTCGCGTACTTTGATGGAGGCCTTTGCGGGTTTGGGTTGCTTCATCGA
TGAGGAGGTGTCTAAGCGAGAGGTTACAAGTACGATGGGTATCTCTAGAC
CCGTCGCTACAGAAGGGGCTGCCTTGGCGGCTGTTTCAAGTGCAGGCGCC
CCAGAAGCCAGCTCGTGAAGGTGTGCCCTGTCTGCAAATCCTCCCGTTAC
CTGAACCCAGACATGCGATTTCTCATCAATCCCGAATGCTACCACAAGAT
GTGCGAGTCCTGCGTGGACCGAATCTTCTCCTCAGGCCCTGCGAACTGTC
CCGTGGCGGGCTGTCACAAGACCCTGCGCAAGAACCGATTTCGCAAGCAG
ACATTCGAGGATATTAATGTGGAAAGAGAGGTGGACATTCGGCGCAGAGT
AATGCAAATATGCCTCCTGCTCGTGATATCATGGCTCACCGGGGGGATGA
CGACGTCTTAACCGCCGCGAAGAAGAGTTTGATTCGAAACGAGCCTATGA
TGACTTCCTCGAACAACGCGAAGAGATAATAGCGAACCTTGTCCATGGCA
CAGATGTGGCGAAGACAGAAAGCGACCTACAAAGATATGCTGCAGACAAC
ATGCGGTCGATTCGCGCCAATCAAGCCCTCGAAGCGCAAGAGGCCTCATC
CTTCCGAGAACAACAAACACACGAACAAGAACTGGCACGTCTTCGGCGAG
AGGCAGCTAGACTGGAATATGAGAACGAACGGAAGGAGATGCTTGCCGGC
CGGGAAGACGTTCTCAGCCGTCTTGCGGCAGGTCGACCTGGCGACGCAGC
GGCTATCGCCCGCGAAGGTCACAAGGTGCTGCTTAAGAAATCTTCTGCTC
GCCGCAGTGAAGAAGACCGGATTCGACAGAAGCAGGCTGCTTTGCGCAGC
TCAGATGCCAGGAAAGCTGGGCAGGGCGCCCTTACCACGGCGGACAGGGC
GGATGACAGTGGTGATTCTGGCTTGATCAAGGGTCTTAAGAAGATTGTGA
CGCCCGAGCCTGAGAAGCCTTATGATCCTTTTGGTGGCCTTGTTCCCAAC
AAGAGGGACTACTATACTCTGCGCGACTATTACCCGAACAGCTATCTCGA
CCCCATTCGCCAGGACACTCGTATGCAGGCTGGTGGATACGACCTTCAGG
AATACTACTCGCGTACTTTGATGGAGGCCTTTGCGGGTTTGGGTTGCTTC
ATCGATGAGGAGGTGTCTAAGCGAGAGGTTACAAGTACGATGGGTATCTC
TAGACCCGTCGCTACAGAAGGGGCTGCCTTGGCGGCTGTTTCAAGTGCAG
GCGCCCCAGAAGCCAGCTCGTGAAGGTGTGCCCTGTCTGCAAATCCTCCC
GTTACCTGAACCCAGACATGCGATTTCTCATCAATCCCGAATGCTACCAC
AAGATGTGCGAGTCCTGCGTGGACCGAATCTTCTCCTCAGGCCCTGCGAA
CTGTCCCGTGGCGGGCTGTCACAAGACCCTGCGCAAGAACCGATTTCGCA
AGCAGACATTCGAGGATATTAATGTGGAAAGAGAGGTGGACATTCGGCGC
AGAGTAATGCAAATATGCCTCCTGCTCGTGATATCATGGCTCACCGGGGG
GATGACGACGTCTTAACCGCCGCGAAGAAGAGTTTGATTCGAAACGAGCC
TATGATGACTTCCTCGAACAACGCGAAGAGATAATAGCGAACCTTGTCCA
TGGCACAGATGTGGCGAAGACAGAAAGCGACCTACAAAGATATGCTGCAG
ACAACATGCGGTCGATTCGCGCCAATCAAGCCCTCGAAGCGCAAGAGGCC
TCATCCTTCCGAGAACAACAAACACACGAACAAGAACTGGCACGTCTTCG
GCGAGAGGCAGCTAGACTGGAATATGAGAACGAACGGAAGGAGATGCTTG
CCGGCCGGGAAGACGTTCTCAGCCGTCTTGCGGCAGGTCGACCTGGCGAC
GCAGCGGCTATCGCCCGCGAAGGTCACAAGGTGCTGCTTAAGAAATCTTC
TGCTCGCCGCAGTGAAGAAGACCGGATTCGACAGAAGCAGGCTGCTTTGC
GCAGCTCAGATGCCAGGAAAGCTGGGCAGGGCGCCCTTACCACGGCGGAC
AGGGCGGATGACAGTGGTGATTCTGGCTTGATCAAGGGTCTTAAGAAGAT
TGTGACGCCCGAGCCTGAGAAGCCTTATGATCCTTTTGGTGGCCTTGTTC
CCAACAAGAGGGACTACTATACTCTGCGCGACTATTACCCGAACAGCTAT
CTCGACCCCATTCGCCAGGACACTCGTATGCAGGCTGGTGGATACGACCT
TCAGGAATACTACTCGCGTACTTTGATGGAGGCCTTTGCGGGTTTGGGTT
GCTTCATCGATGAGGAGGTGTCTAAGCGAGAGGTTACAAGTACGATGGGT
ATCTCTAGACCCGTCGCTACAGAAGGGGCTGCCTTGGCGGCTGTTTCAAG
TGCAGGCGCCCCAGAAGCCAGCTCGTGAAGGTGTGCCCTGTCTGCAAATC
CTCCCGTTACCTGAACCCAGACATGCGATTTCTCATCAATCCCGAATGCT
ACCACAAGATGTGCGAGTCCTGCGTGGACCGAATCTTCTCCTCAGGCCCT
GCGAACTGTCCCGTGGCGGGCTGTCACAAGACCCTGCGCAAGAACCGATT
TCGCAAGCAGACATTCGAGGATATTAATGTGGAAAGAGAGGTGGACATTC
GGCGCAGAGTAATGCAAATATGCCTCCTGCTCGTGATATCATGGCTCACC
GGGGGGATGACGACG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005675transcription factor TFIIH holo complex
Vocabulary: Molecular Function
TermDefinition
GO:0061575cyclin-dependent protein serine/threonine kinase activator activity
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
GO:0045737positive regulation of cyclin-dependent protein serine/threonine kinase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_008674KJC3_008674Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008674-T1KJC3_008674-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008674-T1.cdsKJC3_008674-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008674-T1.exon3KJC3_008674-T1.exon3Aspergillus niger KJC3exon
KJC3_008674-T1.exon2KJC3_008674-T1.exon2Aspergillus niger KJC3exon
KJC3_008674-T1.exon1KJC3_008674-T1.exon1Aspergillus niger KJC3exon


Properties
Property NameValue
NoteBUSCO:EOG092649XV
DBxrefInterPro:IPR017907
DBxrefInterPro:IPR001841
DBxrefInterPro:IPR004575
DBxrefInterPro:IPR015877
DBxrefInterPro:IPR013083
DBxrefPFAM:PF17121
DBxrefPFAM:PF06391
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:2682022..2683278 -
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