|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:3093439..3095665+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008803-T1 ID=KJC3_008803-T1|Name=KJC3_008803-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2227bp|location=Sequence derived from alignment at ch6:3093439..3095665+ (Aspergillus niger KJC3) GCTCGATTTCCATGGCCGCCACTGGGAGCTGCTCTGCACCCAGCTTGCTG
GCAGCGCTTCTTCTACGATTCTAATGACTAACCGCCATCATGGTGTCTTG
TCCCATCTGCAGCCAGTCCGTCTCGTCCCTAAAGATTAACGACCACATCG
ATTCCGACTGCCAGAACTTTATCGAAGAGCCGCCCAGCTCGGGGGAGACT
CCCGCCACTCAGAAAGCTCCGGTTCCCAGCTTCTTCCAGCCAGCCTCTGC
TAAGAAAGCTTCTGCCCAGTCTGCTCAGGCAAATGGACAGCGAGATCAAA
ATGTGACTTCCTCCCCACTGCGCAATGTCAACGGCAAACGGGCGACGCCG
CACGATGCCAACTCATCGGAGGTATACGAGAGATCCGGGCCCAGCCAACC
GTCGAGCGAACCAAAGAAGCCAAAAGTTAGCGCCTTGCAAAAGGCTGCGC
CTTTACCGGAACGCATGCGTCCTCGGACTCTTGACGATGTCTGCGGACAA
GAGCTTGTAGGGCCAAACGGAGTGCTTCGGGGCTTGATTGAGCAAGATCG
GGTTCCGAGTATGATTCTTTGGGGTGGTCCAGGAACAGGAAAAACAACCA
TTGCTCGCGTGATTGCTTCGATGGTTGGTAGCCGCTTCGTTGAGATCAAC
AGTACCAGTTCGGGAGTTGCGGAGTGCAAGAAAATCTTCTCCGATGCGAA
AAGTGAGCTCGGTCTGACGGGACGGAAGACCATCATTTTCTGTGACGAGA
TTCATCGATTCTCCAAGTCTCAACAAGACGTATTTCTGGGACCAGTAGAA
AGTGGGCAGGTAACGCTTATTGGTGCTACCACGGAGAACCCTTCTTTCAA
GGTGCAGAACGCTCTGCTGTCCCGGTGTCGGACTTTTACTCTTTCCAAAC
TTACAGACGAAGATATCAAATCGATCCTTCATCGAGCACTACGGCTGGAG
GGGCCGAACTATTCGCCTTCGGAATTGGTCGATGAAGAATTGATTGATTA
CTTGGCCAGGTTCGCCGATGGCGACGCGCGGACGTCCCTTAATCTTCTAG
AGCTCGCCATGGATCTGTCGAAACGGCCTGGAATGACCAAGGATGAGATC
AAGCGGTCATTGACTAAGACCCTTGTCTATGATCGGGCCGGGGATCAACA
CTACGATACCATTTCCGCTTTTCACAAATCCATCCGGGGGAGCGATCCGG
ATGCGGCGCTTTACTATCTTGCTCGCATGATCCAGTCGGGAGAAGACCCC
CTCTATATCGCTCGACGTCTCATCGTCGTCGCTTCGGAGGACATTGGGCT
TGCGGACAACAGCATGCTCACGCTAGCCATCTCGACCCACGCGGCTGTGG
AAAAGATCGGCCTACCGGAGGCACGGATCAATCTGGCACATGCGACCGTT
GCCATGGCACTCTCAAAGAAGAGCACGCGGTCGTACCGCGGCCTGAACAA
TGCATTTGCTGCGCTAGCAGAGCCCGGCGTTGCTGGGCTGCCTGTTCCGA
TCCATCTGCGCAATGCGCCGACTCGGTTGATGAAGGAGCTCGGATACGGC
AAGGAATACAAGTATAATCCTAACTATGTCGACGGGGAGGTCGTCCAGGA
CTATCTCCCGGAAAAGATTTTGGGACGGAAGTTCTTGGAGGATCACGATC
TAGGACATCAGGTGGACCCAGATCTCATGAGGTAGACTACTCATGTTCAT
GTCAATGAGGCAGTATAAACCTGCCAATGCCATTGGCTCGCCCTCGATCA
TCACACAAGGCCACGCAGAGCCAGCGTGTGCCTGATGGCACAAATATGCT
TGCATGAAAGCACCTCGATCGCCTCCACCATTGGCAGCATGCCAATGTCA
GATATGGGGCGTAAAAGACATCTGCTGGATCAGACGGAGCCCATCAAACT
TGTACAGGCGCTTACCAGAAAAAGCTTTTCCCCTGTCCAGGCACAGGAAA
CTGCGCATTGGGCGGTTGGGTAGGAGTATGACGGAGTAACCACGGCCAGT
TGCCAGGAGTACATGCCAGGGACAGCCTCACGCATACTTTCTACCGAAAG
ATATAGACCATGGTAGATACAATTGAGTACATAGGACAGATAACTGCTTC
CTACATTTTAGACTTCTAGTCTACCAACTAATCGGTACCAAGTTAGTAGG
ATGTTCAAACCAAACGTGTTCCAGGTTAGACTCCGCCGCCAATCAAACAG
CCGCCTCGCGTCTCCATCGCGTCTCCA back to topCoding sequence (CDS) from alignment at ch6:3093439..3095665+ >KJC3_008803-T1 ID=KJC3_008803-T1|Name=KJC3_008803-T1|organism=Aspergillus niger KJC3|type=CDS|length=1596bp|location=Sequence derived from alignment at ch6:3093439..3095665+ (Aspergillus niger KJC3) ATGGTGTCTTGTCCCATCTGCAGCCAGTCCGTCTCGTCCCTAAAGATTAA CGACCACATCGATTCCGACTGCCAGAACTTTATCGAAGAGCCGCCCAGCT CGGGGGAGACTCCCGCCACTCAGAAAGCTCCGGTTCCCAGCTTCTTCCAG CCAGCCTCTGCTAAGAAAGCTTCTGCCCAGTCTGCTCAGGCAAATGGACA GCGAGATCAAAATGTGACTTCCTCCCCACTGCGCAATGTCAACGGCAAAC GGGCGACGCCGCACGATGCCAACTCATCGGAGGTATACGAGAGATCCGGG CCCAGCCAACCGTCGAGCGAACCAAAGAAGCCAAAAGTTAGCGCCTTGCA AAAGGCTGCGCCTTTACCGGAACGCATGCGTCCTCGGACTCTTGACGATG TCTGCGGACAAGAGCTTGTAGGGCCAAACGGAGTGCTTCGGGGCTTGATT GAGCAAGATCGGGTTCCGAGTATGATTCTTTGGGGTGGTCCAGGAACAGG AAAAACAACCATTGCTCGCGTGATTGCTTCGATGGTTGGTAGCCGCTTCG TTGAGATCAACAGTACCAGTTCGGGAGTTGCGGAGTGCAAGAAAATCTTC TCCGATGCGAAAAGTGAGCTCGGTCTGACGGGACGGAAGACCATCATTTT CTGTGACGAGATTCATCGATTCTCCAAGTCTCAACAAGACGTATTTCTGG GACCAGTAGAAAGTGGGCAGGTAACGCTTATTGGTGCTACCACGGAGAAC CCTTCTTTCAAGGTGCAGAACGCTCTGCTGTCCCGGTGTCGGACTTTTAC TCTTTCCAAACTTACAGACGAAGATATCAAATCGATCCTTCATCGAGCAC TACGGCTGGAGGGGCCGAACTATTCGCCTTCGGAATTGGTCGATGAAGAA TTGATTGATTACTTGGCCAGGTTCGCCGATGGCGACGCGCGGACGTCCCT TAATCTTCTAGAGCTCGCCATGGATCTGTCGAAACGGCCTGGAATGACCA AGGATGAGATCAAGCGGTCATTGACTAAGACCCTTGTCTATGATCGGGCC GGGGATCAACACTACGATACCATTTCCGCTTTTCACAAATCCATCCGGGG GAGCGATCCGGATGCGGCGCTTTACTATCTTGCTCGCATGATCCAGTCGG GAGAAGACCCCCTCTATATCGCTCGACGTCTCATCGTCGTCGCTTCGGAG GACATTGGGCTTGCGGACAACAGCATGCTCACGCTAGCCATCTCGACCCA CGCGGCTGTGGAAAAGATCGGCCTACCGGAGGCACGGATCAATCTGGCAC ATGCGACCGTTGCCATGGCACTCTCAAAGAAGAGCACGCGGTCGTACCGC GGCCTGAACAATGCATTTGCTGCGCTAGCAGAGCCCGGCGTTGCTGGGCT GCCTGTTCCGATCCATCTGCGCAATGCGCCGACTCGGTTGATGAAGGAGC TCGGATACGGCAAGGAATACAAGTATAATCCTAACTATGTCGACGGGGAG GTCGTCCAGGACTATCTCCCGGAAAAGATTTTGGGACGGAAGTTCTTGGA GGATCACGATCTAGGACATCAGGTGGACCCAGATCTCATGAGGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
Term | Definition |
GO:0006260 | DNA replication |
GO:0006281 | DNA repair |
Vocabulary: Molecular Function
Term | Definition |
GO:0005524 | ATP binding |
GO:0003677 | DNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_008803-T1.utr5p1 | KJC3_008803-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_008803-T1.utr3p1 | KJC3_008803-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
Property Name | Value |
Note | BUSCO:EOG09261W2O |
DBxref | InterPro:IPR008921 |
DBxref | InterPro:IPR027417 |
DBxref | InterPro:IPR003959 |
DBxref | InterPro:IPR021886 |
DBxref | InterPro:IPR032423 |
DBxref | InterPro:IPR003593 |
DBxref | InterPro:IPR006642 |
DBxref | PFAM:PF05496 |
DBxref | PFAM:PF12002 |
DBxref | PFAM:PF16193 |
DBxref | PFAM:PF07726 |
DBxref | PFAM:PF00004 |
Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
ch6 | supercontig | ch6:3093439..3095665 + |
|