You are here

Home

KJC3_008856-T2, KJC3_008856-T2 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_008856-T2
Unique NameKJC3_008856-T2
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:3257495..3259601+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_008856-T2 ID=KJC3_008856-T2|Name=KJC3_008856-T2|organism=Aspergillus niger KJC3|type=mRNA|length=2107bp|location=Sequence derived from alignment at ch6:3257495..3259601+ (Aspergillus niger KJC3)
GTCTTTACCAAGCCCGTCATCACCAGACTTCGAGAAATATTCTCCGTTTG
TTTGGAAGGATAATGCTTGGAGACGGGCAGAGAAATACCAGTGTAAGTGA
CTCCTTTGGGGTTATAGAATATGACTGTGGGCAACAGCGATTGTGGTACT
TTGTTATGAAAGAGGTGGAGAGATCCTTTGTTTTTCAACCCAGAAGATCT
ATGATACCATATCTTTGCCACATATTCCATCATCTAATCAGTAAGGCTAC
CGACTAGCGGCACTAACCCTTCATGCCTCTACCGTGAACTTGGCTTACAG
CATATGTCAACTAACTGTTGGATTTGACTTATAGGGATGGTTGTACCAAA
GGAGGGTGAGAGGGTGGTCCCGAACCGCCCTTTTCGCATCCTGGATGCTC
CCCTCCTCCGAGACGATTTCTATTGTTCGACATTAGCATACTCATCCACG
TCCGGCATACTTGCTGTCGGCCTTGGCCATCGAGTCTATCTATGGTCTGA
GCATCTGGGTGTGCAGCATCCGCCACTCAGTGACCAACACCCCTCAAACT
ACGTGACATCACTTGCGTTCTCCTCGGAGAACGGTGGAAAAAGCATTCTG
GCCGTTGGGAGACAGTCGGGTATGTTATCTCTTTGGAGTACATTCGATTC
TGATGTCCGTTTCGAGATAAGCCATCCAGATTCTATAACTTGTCTGGCAT
TCCGGCCAACAAAATCCCGGAGGTTATCAGAGAGACTTCGCCACCTTGAG
GTCGATGTTGAGGACCTCGCTGTAGGTGACGATCTTGGGAATATCTGGTA
CTACTCTGTGGAATGGCCTGATAATGAAGAATGGGATGAATACGACTTCA
ATGGATCCATGACTTTACTCGCCAAGATTACGGCCCATACGCAGCAAATC
TGCGGCATTACTTGGTCCCCTGAAGGGTCCTATCTTGCAACGGGAGGGAA
TGACAACTGCTGCTTGCTCTTCGACCTCCATGATATTCTTCCTCCACGGG
AGCACAAGCCTTCGTCCCAGGATCACACACCACATCAGTCGCGTCAATCG
GAAGGCACAGAGTGTACAGGCACGTTTACTTGCTTTGCTGCGAGTGCTAG
CAAACGGCTTTTTCGAAGGCGCAGTCTTATTAGTCACCTACTTCCGCCCT
GGGCTTTTTCCAGCGCGAAGCCACTGTATTCTTCTCTCCTCAATCATACT
GGGTCATTGATCTCCGGTGGTGATCGAACCGTCCTGGTCCCGTCCAACCG
TCAAAGACATCGGCTGGTCCATGGCGCCGCGGTCAAGGCTATTGCATTTG
CCCCTTGGCAGCCGTCTCTTTTGGCTACCGGAGGCGGGTCAAACGACCGA
GCCATTCATTTCTACCACGCCCCGACGGGCGCCTGTCTGGCCACGATCAA
TGTGTATGCCCAGGTGACCAGCTTGATTTGGAGTCGTACCCGACGGGAAA
TTGTTGCCACATTCGGATTCGCACAGCCTGAGCATCCGTTCCGCATCGCA
GTATTCGCCTGGCCGAGCTGTGAGCAGATCGCCGCGATTCCTTGGGGGCC
GCATGGGAGTAGTTGGGACAGCCCTGAAAGCGACATGATTGACTGTGGGC
GTGCACTCTGCGCTGTGAGTTATCCCGGCCGTCCTCGCGACTGCGAAGAC
CACAGACCGGATCAAGAAAGCCGTTCTCCCACATCGATGGTGATGCACGA
CCGACTAGCTGAGCAGAGTCGGAGCGAGCCCGGCCGACGGAGCACCGTTC
GGGAAGTTGTACGACCTCGCGCCAGAGAGGGGGGTCTCTGGTGTTCGCGC
ACGGTGCAGGAAGGCTGCATCATTGTGGCTTCCAGCGACCAGAGTGTCAA
ATTCCATGAAGTATGGAGCGGACCTAAACGAGGCGCGGCAGTTGTGGCCG
GACCTCTGGGAGGCAGTGGCATTCTCGAAGGGCTCGAAGGGCTGGAGATC
ATTGGGGACGAAATCATCCGTTAATATGCATTGCAGCGCGCACATATCAT
TATCGATATTAATTAGGTTGAGACTTCGAAGGACTCGACTATTACTATTA
CACGAAAGCCAGGTGTACCTAGATACTTAGTTGCATTGTTAGATTTCAAC
AATAGAC
back to top

Coding sequence (CDS) from alignment at ch6:3257495..3259601+

>KJC3_008856-T2 ID=KJC3_008856-T2|Name=KJC3_008856-T2|organism=Aspergillus niger KJC3|type=CDS|length=3636bp|location=Sequence derived from alignment at ch6:3257495..3259601+ (Aspergillus niger KJC3)
ATGCTTGGAGACGGGCAGAGAAATACCAGTGTAAGTGACTCCTTTGGGGT
TATAGAATATGACTGTGGGCAACAGCGATTGTGGTACTTTGTTATGAAAG
AGGTGGAGAGATCCTTTGTTTTTCAACCCAGAAGATCTATGATACCATAT
CTTTGCCACATATTCCATCATCTAATCAGGATGGTTGTACCAAAGGAGGG
TGAGAGGGTGGTCCCGAACCGCCCTTTTCGCATCCTGGATGCTCCCCTCC
TCCGAGACGATTTCTATTGTTCGACATTAGCATACTCATCCACGTCCGGC
ATACTTGCTGTCGGCCTTGGCCATCGAGTCTATCTATGGTCTGAGCATCT
GGGTGTGCAGCATCCGCCACTCAGTGACCAACACCCCTCAAACTACGTGA
CATCACTTGCGTTCTCCTCGGAGAACGGTGGAAAAAGCATTCTGGCCGTT
GGGAGACAGTCGGGTATGTTATCTCTTTGGAGTACATTCGATTCTGATGT
CCGTTTCGAGATAAGCCATCCAGATTCTATAACTTGTCTGGCATTCCGGC
CAACAAAATCCCGGAGGTTATCAGAGAGACTTCGCCACCTTGAGGTCGAT
GTTGAGGACCTCGCTGTAGGTGACGATCTTGGGAATATCTGGTACTACTC
TGTGGAATGGCCTGATAATGAAGAATGGGATGAATACGACTTCAATGGAT
CCATGACTTTACTCGCCAAGATTACGGCCCATACGCAGCAAATCTGCGGC
ATTACTTGGTCCCCTGAAGGGTCCTATCTTGCAACGGGAGGGAATGACAA
CTGCTGCTTGCTCTTCGACCTCCATGATATTCTTCCTCCACGGGAGCACA
AGCCTTCGTCCCAGGATCACACACCACATCAGTCGCGTCAATCGGAAGGC
ACAGAGTGTACAGGCACGTTTACTTGCTTTGCTGCGAGTGCTAGCAAACG
GCTTTTTCGAAGGCGCAGTCTTATTAGTCACCTACTTCCGCCCTGGGCTT
TTTCCAGCGCGAAGCCACTGTATTCTTCTCTCCTCAATCATACTGGGTCA
TTGATCTCCGGTGGTGATCGAACCGTCCTGGTCCCGTCCAACCGTCAAAG
ACATCGGCTGGTCCATGGCGCCGCGGTCAAGGCTATTGCATTTGCCCCTT
GGCAGCCGTCTCTTTTGGCTACCGGAGGCGGGTCAAACGACCGAGCCATT
CATTTCTACCACGCCCCGACGGGCGCCTGTCTGGCCACGATCAATGTGTA
TGCCCAGGTGACCAGCTTGATTTGGAGTCGTACCCGACGGGAAATTGTTG
CCACATTCGGATTCGCACAGCCTGAGCATCCGTTCCGCATCGCAGTATTC
GCCTGGCCGAGCTGTGAGCAGATCGCCGCGATTCCTTGGGGGCCGCATGG
GAGTAGTTGGGACAGCCCTGAAAGCGACATGATTGACTGTGGGCGTGCAC
TCTGCGCTGTGAGTTATCCCGGCCGTCCTCGCGACTGCGAAGACCACAGA
CCGGATCAAGAAAGCCGTTCTCCCACATCGATGGTGATGCACGACCGACT
AGCTGAGCAGAGTCGGAGCGAGCCCGGCCGACGGAGCACCGTTCGGGAAG
TTGTACGACCTCGCGCCAGAGAGGGGGGTCTCTGGTGTTCGCGCACGGTG
CAGGAAGGCTGCATCATTGTGGCTTCCAGCGACCAGAGTGTCAAATTCCA
TGAAGTATGGAGCGGACCTAAACGAGGCGCGGCAGTTGTGGCCGGACCTC
TGGGAGGCAGTGGCATTCTCGAAGGGCTCGAAGGGCTGGAGATCATTGGG
GACGAAATCATCCGTTAAATGCTTGGAGACGGGCAGAGAAATACCAGTGT
AAGTGACTCCTTTGGGGTTATAGAATATGACTGTGGGCAACAGCGATTGT
GGTACTTTGTTATGAAAGAGGTGGAGAGATCCTTTGTTTTTCAACCCAGA
AGATCTATGATACCATATCTTTGCCACATATTCCATCATCTAATCAGGAT
GGTTGTACCAAAGGAGGGTGAGAGGGTGGTCCCGAACCGCCCTTTTCGCA
TCCTGGATGCTCCCCTCCTCCGAGACGATTTCTATTGTTCGACATTAGCA
TACTCATCCACGTCCGGCATACTTGCTGTCGGCCTTGGCCATCGAGTCTA
TCTATGGTCTGAGCATCTGGGTGTGCAGCATCCGCCACTCAGTGACCAAC
ACCCCTCAAACTACGTGACATCACTTGCGTTCTCCTCGGAGAACGGTGGA
AAAAGCATTCTGGCCGTTGGGAGACAGTCGGGTATGTTATCTCTTTGGAG
TACATTCGATTCTGATGTCCGTTTCGAGATAAGCCATCCAGATTCTATAA
CTTGTCTGGCATTCCGGCCAACAAAATCCCGGAGGTTATCAGAGAGACTT
CGCCACCTTGAGGTCGATGTTGAGGACCTCGCTGTAGGTGACGATCTTGG
GAATATCTGGTACTACTCTGTGGAATGGCCTGATAATGAAGAATGGGATG
AATACGACTTCAATGGATCCATGACTTTACTCGCCAAGATTACGGCCCAT
ACGCAGCAAATCTGCGGCATTACTTGGTCCCCTGAAGGGTCCTATCTTGC
AACGGGAGGGAATGACAACTGCTGCTTGCTCTTCGACCTCCATGATATTC
TTCCTCCACGGGAGCACAAGCCTTCGTCCCAGGATCACACACCACATCAG
TCGCGTCAATCGGAAGGCACAGAGTGTACAGGCACGTTTACTTGCTTTGC
TGCGAGTGCTAGCAAACGGCTTTTTCGAAGGCGCAGTCTTATTAGTCACC
TACTTCCGCCCTGGGCTTTTTCCAGCGCGAAGCCACTGTATTCTTCTCTC
CTCAATCATACTGGGTCATTGATCTCCGGTGGTGATCGAACCGTCCTGGT
CCCGTCCAACCGTCAAAGACATCGGCTGGTCCATGGCGCCGCGGTCAAGG
CTATTGCATTTGCCCCTTGGCAGCCGTCTCTTTTGGCTACCGGAGGCGGG
TCAAACGACCGAGCCATTCATTTCTACCACGCCCCGACGGGCGCCTGTCT
GGCCACGATCAATGTGTATGCCCAGGTGACCAGCTTGATTTGGAGTCGTA
CCCGACGGGAAATTGTTGCCACATTCGGATTCGCACAGCCTGAGCATCCG
TTCCGCATCGCAGTATTCGCCTGGCCGAGCTGTGAGCAGATCGCCGCGAT
TCCTTGGGGGCCGCATGGGAGTAGTTGGGACAGCCCTGAAAGCGACATGA
TTGACTGTGGGCGTGCACTCTGCGCTGTGAGTTATCCCGGCCGTCCTCGC
GACTGCGAAGACCACAGACCGGATCAAGAAAGCCGTTCTCCCACATCGAT
GGTGATGCACGACCGACTAGCTGAGCAGAGTCGGAGCGAGCCCGGCCGAC
GGAGCACCGTTCGGGAAGTTGTACGACCTCGCGCCAGAGAGGGGGGTCTC
TGGTGTTCGCGCACGGTGCAGGAAGGCTGCATCATTGTGGCTTCCAGCGA
CCAGAGTGTCAAATTCCATGAAGTATGGAGCGGACCTAAACGAGGCGCGG
CAGTTGTGGCCGGACCTCTGGGAGGCAGTGGCATTCTCGAAGGGCTCGAA
GGGCTGGAGATCATTGGGGACGAAATCATCCGTTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_008856KJC3_008856Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008856-T2.utr5p1KJC3_008856-T2.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008856-T2.exon1KJC3_008856-T2.exon1Aspergillus niger KJC3exon
KJC3_008856-T2.exon2KJC3_008856-T2.exon2Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008856-T2.cdsKJC3_008856-T2.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008856-T2.utr3p1KJC3_008856-T2.utr3p1Aspergillus niger KJC3three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008856-T2KJC3_008856-T2-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR036322
DBxrefInterPro:IPR017986
DBxrefInterPro:IPR015943
DBxrefInterPro:IPR001680
DBxrefPFAM:PF00400
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:3257495..3259601 +
Powered by Drupal