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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:3264222..3269881+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008859-T1 ID=KJC3_008859-T1|Name=KJC3_008859-T1|organism=Aspergillus niger KJC3|type=mRNA|length=5660bp|location=Sequence derived from alignment at ch6:3264222..3269881+ (Aspergillus niger KJC3)
GCGGTTCTCTCCCCCTCAAAGTGCACAGAACTCTCTCCTCTTCCTTCGAC
GTCGATCGAACAGCGCCCTCTTCTAGTCTTCCAATGCAACAGTTCTCTTC
ACCTATCTGTCTGTCTGACTGATTGACTGACTGACTTGTCCTGACCTGCT
CACATTTACCTCATACTTCACATGAATCAATGTTCCTTGCAGAGTGCTTC
AGGTCCACTTGCTACAATGGCTCTGATCACCACGAGATTCACAGACGCCC
ACTGGGCAACATTCAGAATGGTTGACCCCGCGTCTTCTACAATCAACTAA
CCACTGCTGCAATATTTCTCCTGATTTCACCACTCATCCTTCGCTCCACA
TCCAGTTTCGTTGGGTGGTGACAATAGGTTTGTCAAGGATTTTCACCACA
ATTTCTCTTTCACATGATTGCTCGCAACTATAATTTCATTCTTTGATGAT
TCCTTTCCATGGTTCCATCTAGCTTATCCCTCACAGAGGGGGTGGCATGT
TGGGTGCACTTGATCTTGTTAATAATTATACGAAGAATGACTCACACTTC
ATCCGGACATATCCTGCTACCTATGCAGGTATCCACGTCTTGATCCACAA
AAAGTTAGGGGCTCTGGCTGAGGCAAGACATATCCGAGATGATGGAGCAC
ACTTGGGGTAGTCTCTGATTGCGACCAACAGAACAAGGAGTGGCAGCAGG
CGCCACCGTTACTCTACGGCTGCCTAGACGAGTCATCCAGTCAACCCAGC
AATATTGTGAGCAAGGTAACTCATCAAACGCCAGTTGGAAATGCCGCAGC
CACAGCAGCCGCCACTCTTACAGCTCTTATACGTGATACCTTTCACTGGT
ATGCGGGCCAGCTCGCGAAATGGTGTTGTCACTCGGAGTCGGAATCGGAG
CTCTGGCCCGGAGTGGTTGGTTACATCAGCAGGTACACCCAACCTAGTCC
GGATCCGATGCAAGGGAGGGTTCAGGGCCTAACCCTGGGGTTTCATCAGG
TCTGGTGACCTCCACAGCCTGGCTCGGCGTCCAGCTCAACAGGCTTCACC
CCGAATCCATGATGCACTTCTTATACCGCTTGAATGCCTGACAGATTTTT
GGGTATGTCATATCTGACCTGACTCACTTCCAGTATCATCACGATGCATC
TTGTCGATGAAATGGGATGATGGGGGCTCTGTGCCGATCGTTATTCCTCC
AAGGTTTGGAAGGTTGTGGAATGCCTGGTTGCATTTTCAGCTCATGTTGT
TGTCTTCACCACCACCTGAAGACTTTTTTTTTTTTTTTTTGCTCACACCT
CTCTTGTTGTTTTCGATGTTTCCGACAAAGGGAACTTCTGGTACCCGGAA
CCTGGGTCCACCGTCCAGGGTTGGTTACAGCCAATAACAACTCGTATCTC
GTAGAACGCGTCATCCCTGGACCAATCAGCGGCTGCGGAATGGCTTGAAC
TAGAATAATTGGGACTAGCGTGGCCGATGGAGTTAGCGGCAGAGGACGGA
CGGGCGCAACGCGACCGTTCGTACTTAAGGATTCTAGCACCCCCTCCGAC
TTTCTCAGTCTCTGTTTCTGGAGCTGAGCTGAGAGCTGCTGCGCGCCGGT
CACGCTTTCCTTTTACCCTGCCATTCACGCCCCCTCCGACCGCCCTTTGT
GTCCTCGGCTGCCCCTGGACTGCGCTCCATCTCTCCTTCCTTCATAACAC
GCTATTCACGCGTCATTCGCGTCGCGCGCTTGCTCGATCCCAGCCACAGC
TACTGCAGCTGCTTATTTGGGTTCCAATTTTATTTTTTGGCCCGCCCCTT
TCCCCTTTTTTTCTTCTAATATTATTAGCAACGACTCCATCGCGTTGCCG
ACAACACGGACTTTACTTCACTGTATCTTCCTCATCGCTTCTTCCCCCCC
AATCCCTTTCAGCTCTTACTCCAGGCACCAACACCTGGTTTCTGGCCTCA
GGCAGCCATCGCGGCTTGGCACGTGCAGATTGTGGATTGACGAGCATTTG
AGCTCCAACTGACATTCTCCTTATCTCGTCTTCTCTCACCTGCTGCTTTC
CCCCTAGTCCCTTTCTTTCATTGAATTCCGTCTTTTTCCCTCTTCGGTCT
GGCGACTTTTTATTTGCCTCCCGCTTAGTCACCGGTACTTGCCGCACCAC
GTGACTGCAGGCTATCTTCCGCCCGCCGCCCTCTTGGCAATATAAATATT
CCTCCTTCCTGTCGCATTCTCCACCCCCCTCCGGCCCGCGCTAATCTTCC
ATCCTTTCTTGTATCTCTTGCAACTTCCGTGGCGTCGCATACCATCTGTG
GCCTGCGCAAGACACCCGTCTGCCCTTGTGTGTCTTCTGTCATCTAATCA
GCTGTTGTCGCTCGCCGATTACCGAAAATCCATACATTAGTCTGTGTTAG
CGCAGAGAGTACCTATTCAGTTGATTTGTGTTACTGCCGCTCCCTAAACT
TTCCGATTCCAGTGACCAGCTCCTGCGACCAGAATCGCTGCCTGTTAGAT
TCTTTTGTACCCCCGGTCCCGTCGGAGGACATAATCGAAAATTCAGCGAC
CTCAAATGGCGACGCCGCCTCCCGAGGCTCCCTCTGCGATCAAAGAGGAG
AAGCCTCAATTGCCGCCGTCGCCCAATGGAGTTTCGCCTGCTGATACCGG
TCGCACAGGGTATGCTCCGCTTTGAGCGTTTTGTGTATACGCCATCTGTT
TGCTAATGTCTTCACAGAGTCCAAGATGCTGTAGTCAACGCTAAATCGGA
CGCGCCCGTCAATGGTGCAGAGAAGCCGATAGAGGAGACCAAGTCCGCCA
CGGCAAACGGAACGACTGCCGAGTCTACCTCCAACACAAACGGCGTAGCC
GCGACCGCATCCCCGCCTAAGAGTCCATCCTTGCCGACCGCAGATACTTC
CGCACAACCAGCCGTCGCGTCCGAAGAAGCCAAACCTTCAAATGTGGATT
CCGCTGCGACTGGGGAGAAGGAAACCGCTAGTGAAAAGACGTCTGCGGCT
GCACAGGCTAGTGGCGAAGGTGCGAGTGGCGCCAAGTCCAAAGACACACA
GGCGCTTCAGGATGCATCAAAGCCATCAACTGATGCGCCGTCCGACGCTA
AAGTGGAGAGCACTGCCCAGCCATCACAAGATACTGCCGCTGTGAAAACC
GAATTGCCTCACCATCCTTCGAATGCGAAGCCAGAGAGCACAATGCAGAC
AGAGGCTGCCAGTACGGCTCCGTCGGTGCCGCCACTGCAGAACGTGGATC
AGGAGATGCGTGACGCGCCCGATGTTCCGGCCTCCCCGACAAAGATTTCG
AGGGAGCGCGAACGCGATCCCAGCGATGAGCCCGCCGCCAAGCGTACCAA
GATCGGAGGTGAAGGTGCGGCGGCGTCCGCCGACTTCAAGGTTCCCGATT
TGCCTACACCTACCGAGTCGCGCTCGGAACGGGCTACAAATGGAGAAACA
ACCATGACCAAGGTTCAGCACAAGTTCCTGTCCAAGTCCATCCAGAGCCT
GAAGCGGATGCACGATTCCCGCTTCTACAGAGAGCCTGTGGATCCCATCA
AGCTGAATGTCCCCCACTACCCGCAGTTCATCAAACGGCCTATGGACCTT
GGAACCATTGAGAAAAAGTTGAAAAACAACGTGTATCGGACTGCACAGGC
CGTTATTGATGATTTCAACCTCATGGTTCAGAATGCGTTGACATTCAACG
GTCCCGACCACCTTGTCGCTCAAGAGGGGCAGAAGCTCAAGATCACGTTC
GATAAGCAGATGGCCAATTTACCTCGAGCCGATGAAGTGGAGGAGAAGAA
GCCGAAGAAGTCTGTTGCTAAGCCCTCGACAGCAATCCGTCGAGATCACC
GACCCGCCCCAAGTCCTAGCACAGCACGCGCCACCGGCGCTTCTCCCCAG
GCGACAACCTTTGCCCTGGGCCCGGAAGGCCTTCCTTTGATCCGCCGTGA
TTCTGCTAATGCCGATGGGCGTCCTAAGCGTTCCATCCACCCCCCTAAAC
GCGATCTCCCGTACTCCACGAAACCGAAGAAGAAGAAATATCAGTGGGAG
CTGAGATTCTGCCAGGAGGTGCTGGATGAGCTGCACAAGCCCAAGCACTA
CACCTACGCGATGCCTTTCTACCATCCCGTTGACCCTGTTGCGCTCAACA
TCCCTACGTATCACAGCATTATCAAGAAGCCCATGGATTTCTCTACTGTG
CAAAGCAAATTGAGGGCCGGCCAGTATGAGAATGCCAAGGAGTTTGAACT
TGATATGCGCCTCATCTTGAAGAACTGTTTCAAATTCAACATTCCAGGTG
ACCCGACCTACATGGCGGGCCAGCGGCTGGAGGAAGAATTTAACAAGAAA
TGGGCCCAGAAGACACGGTATCTGGAGCAGCATGAACCGCATGTCGAGCA
TCACAGCGCCGAGTCGTCCGAAGAAGAGAGCGAGGAGGACGCCGAAGAAA
GCGACTATGATGCCGAGAAGCTCAGCCTGCTGCAGAAGCAGATGGAAGAG
ATGACCCGCCAGATCGAAGCTATTACGAAGAAGAAGAAGACCCCCCCTGG
AAGCAAAAAGCTCGGAAAGACCAAGCCGGGGAAGAAGGAGAGCAAGAAGC
CTAGCACTATGGGGCTCGCTAAGAAGGAGAGCAAGAAGAGCACCACCAAG
GTTTCAGCCAAACCGGAGAAGCAGCACTGGGTCACCTACCATGAGAAGCA
GATTATTTCCAACGGGATTAGTAGCCTTCCTGATAAGAAGATGCAGGAGG
CTCTCAAAATCATCCAGACTAATGTCCCGGCCCTCAAGGTAAGTTGTTTG
CTTAATGTGATCTTACTCTCGATGCAAGGCCTAACAAGTTCTGCAGGGTA
CCCAAGAGGCTGAGATCGAGCTCGACATTGATGAGCTTCCTAACGATGTT
CTCCTTATGCTACTTCGGTTCGTCAAGAAGAACGCGCCGCATGTGGTAGA
GGAAGACCCTGCCTCTGCGGCCGCGGCGAACGCAGCCGCCCCGAAGCCGA
AGAAGAATAAGCCCATGAGCAAGTACGAGCAAGAAGCTCAGATTAACATG
CTCGAAAGCAACCTGTCTCGGTTCCAGGGTGGTGGCGGTGGCCGTTCTCC
AGACCCTATGCCCTCCGTCGAAGCCAACGAGAGCAGCGACGACTCTGAAG
ATGACTCGGAGGAGAGCGAGGAGGAGTAAATGATCGCTGCCTCTGGCAAG
CCATGTTGTTCTTCTGTTTGCTGGGCCTGTGCCTCATGACTTCAGTAGTT
AATTCCCACCGCGTGTTACGCCATGGTCTTTTCTTCTACCCACTAATGAG
CTTTGTTTTATTTTCCGTCACTCTACTTCTGTTCCTAGCGATCGTGTTTT
CATTTCCTTTTCCTTACTTTTTTCTTTTCTCTATTTTCCATGTTGGAGGA
CAGTGCGACCGGCAGTGAGCCGCGCACTTGTACATATGGTACGATTTGGG
GAGATTTGGAGAACGTTTGACGACCAGCAGCGCAATCGGATGATCCCTTT
GATGAGTTTGCGTTGGATCTCTGTTGAGCTGAGGGACGTCGAGTTCATCA
GCAGCGGTGATCGGGGTCGGATGCGAGAGAAGCATGCTGGAAAGGCTAGG
TGCGTGTATGATTACGAAAGAAATGTGAAAACGGAAGCGCAAATTCAGCA
TTGTATTATG back to topCoding sequence (CDS) from alignment at ch6:3264222..3269881+ >KJC3_008859-T1 ID=KJC3_008859-T1|Name=KJC3_008859-T1|organism=Aspergillus niger KJC3|type=CDS|length=4500bp|location=Sequence derived from alignment at ch6:3264222..3269881+ (Aspergillus niger KJC3)
ATGGCGACGCCGCCTCCCGAGGCTCCCTCTGCGATCAAAGAGGAGAAGCC
TCAATTGCCGCCGTCGCCCAATGGAGTTTCGCCTGCTGATACCGGTCGCA
CAGGAGTCCAAGATGCTGTAGTCAACGCTAAATCGGACGCGCCCGTCAAT
GGTGCAGAGAAGCCGATAGAGGAGACCAAGTCCGCCACGGCAAACGGAAC
GACTGCCGAGTCTACCTCCAACACAAACGGCGTAGCCGCGACCGCATCCC
CGCCTAAGAGTCCATCCTTGCCGACCGCAGATACTTCCGCACAACCAGCC
GTCGCGTCCGAAGAAGCCAAACCTTCAAATGTGGATTCCGCTGCGACTGG
GGAGAAGGAAACCGCTAGTGAAAAGACGTCTGCGGCTGCACAGGCTAGTG
GCGAAGGTGCGAGTGGCGCCAAGTCCAAAGACACACAGGCGCTTCAGGAT
GCATCAAAGCCATCAACTGATGCGCCGTCCGACGCTAAAGTGGAGAGCAC
TGCCCAGCCATCACAAGATACTGCCGCTGTGAAAACCGAATTGCCTCACC
ATCCTTCGAATGCGAAGCCAGAGAGCACAATGCAGACAGAGGCTGCCAGT
ACGGCTCCGTCGGTGCCGCCACTGCAGAACGTGGATCAGGAGATGCGTGA
CGCGCCCGATGTTCCGGCCTCCCCGACAAAGATTTCGAGGGAGCGCGAAC
GCGATCCCAGCGATGAGCCCGCCGCCAAGCGTACCAAGATCGGAGGTGAA
GGTGCGGCGGCGTCCGCCGACTTCAAGGTTCCCGATTTGCCTACACCTAC
CGAGTCGCGCTCGGAACGGGCTACAAATGGAGAAACAACCATGACCAAGG
TTCAGCACAAGTTCCTGTCCAAGTCCATCCAGAGCCTGAAGCGGATGCAC
GATTCCCGCTTCTACAGAGAGCCTGTGGATCCCATCAAGCTGAATGTCCC
CCACTACCCGCAGTTCATCAAACGGCCTATGGACCTTGGAACCATTGAGA
AAAAGTTGAAAAACAACGTGTATCGGACTGCACAGGCCGTTATTGATGAT
TTCAACCTCATGGTTCAGAATGCGTTGACATTCAACGGTCCCGACCACCT
TGTCGCTCAAGAGGGGCAGAAGCTCAAGATCACGTTCGATAAGCAGATGG
CCAATTTACCTCGAGCCGATGAAGTGGAGGAGAAGAAGCCGAAGAAGTCT
GTTGCTAAGCCCTCGACAGCAATCCGTCGAGATCACCGACCCGCCCCAAG
TCCTAGCACAGCACGCGCCACCGGCGCTTCTCCCCAGGCGACAACCTTTG
CCCTGGGCCCGGAAGGCCTTCCTTTGATCCGCCGTGATTCTGCTAATGCC
GATGGGCGTCCTAAGCGTTCCATCCACCCCCCTAAACGCGATCTCCCGTA
CTCCACGAAACCGAAGAAGAAGAAATATCAGTGGGAGCTGAGATTCTGCC
AGGAGGTGCTGGATGAGCTGCACAAGCCCAAGCACTACACCTACGCGATG
CCTTTCTACCATCCCGTTGACCCTGTTGCGCTCAACATCCCTACGTATCA
CAGCATTATCAAGAAGCCCATGGATTTCTCTACTGTGCAAAGCAAATTGA
GGGCCGGCCAGTATGAGAATGCCAAGGAGTTTGAACTTGATATGCGCCTC
ATCTTGAAGAACTGTTTCAAATTCAACATTCCAGGTGACCCGACCTACAT
GGCGGGCCAGCGGCTGGAGGAAGAATTTAACAAGAAATGGGCCCAGAAGA
CACGGTATCTGGAGCAGCATGAACCGCATGTCGAGCATCACAGCGCCGAG
TCGTCCGAAGAAGAGAGCGAGGAGGACGCCGAAGAAAGCGACTATGATGC
CGAGAAGCTCAGCCTGCTGCAGAAGCAGATGGAAGAGATGACCCGCCAGA
TCGAAGCTATTACGAAGAAGAAGAAGACCCCCCCTGGAAGCAAAAAGCTC
GGAAAGACCAAGCCGGGGAAGAAGGAGAGCAAGAAGCCTAGCACTATGGG
GCTCGCTAAGAAGGAGAGCAAGAAGAGCACCACCAAGGTTTCAGCCAAAC
CGGAGAAGCAGCACTGGGTCACCTACCATGAGAAGCAGATTATTTCCAAC
GGGATTAGTAGCCTTCCTGATAAGAAGATGCAGGAGGCTCTCAAAATCAT
CCAGACTAATGTCCCGGCCCTCAAGGTAAGTTGTTTGCTTAATGTGATCT
TACTCTCGATGCAAGGCCTAACAAGTTCTGCAGGGTACCCAAGAGGCTGA
ATGGCGACGCCGCCTCCCGAGGCTCCCTCTGCGATCAAAGAGGAGAAGCC
TCAATTGCCGCCGTCGCCCAATGGAGTTTCGCCTGCTGATACCGGTCGCA
CAGGAGTCCAAGATGCTGTAGTCAACGCTAAATCGGACGCGCCCGTCAAT
GGTGCAGAGAAGCCGATAGAGGAGACCAAGTCCGCCACGGCAAACGGAAC
GACTGCCGAGTCTACCTCCAACACAAACGGCGTAGCCGCGACCGCATCCC
CGCCTAAGAGTCCATCCTTGCCGACCGCAGATACTTCCGCACAACCAGCC
GTCGCGTCCGAAGAAGCCAAACCTTCAAATGTGGATTCCGCTGCGACTGG
GGAGAAGGAAACCGCTAGTGAAAAGACGTCTGCGGCTGCACAGGCTAGTG
GCGAAGGTGCGAGTGGCGCCAAGTCCAAAGACACACAGGCGCTTCAGGAT
GCATCAAAGCCATCAACTGATGCGCCGTCCGACGCTAAAGTGGAGAGCAC
TGCCCAGCCATCACAAGATACTGCCGCTGTGAAAACCGAATTGCCTCACC
ATCCTTCGAATGCGAAGCCAGAGAGCACAATGCAGACAGAGGCTGCCAGT
ACGGCTCCGTCGGTGCCGCCACTGCAGAACGTGGATCAGGAGATGCGTGA
CGCGCCCGATGTTCCGGCCTCCCCGACAAAGATTTCGAGGGAGCGCGAAC
GCGATCCCAGCGATGAGCCCGCCGCCAAGCGTACCAAGATCGGAGGTGAA
GGTGCGGCGGCGTCCGCCGACTTCAAGGTTCCCGATTTGCCTACACCTAC
CGAGTCGCGCTCGGAACGGGCTACAAATGGAGAAACAACCATGACCAAGG
TTCAGCACAAGTTCCTGTCCAAGTCCATCCAGAGCCTGAAGCGGATGCAC
GATTCCCGCTTCTACAGAGAGCCTGTGGATCCCATCAAGCTGAATGTCCC
CCACTACCCGCAGTTCATCAAACGGCCTATGGACCTTGGAACCATTGAGA
AAAAGTTGAAAAACAACGTGTATCGGACTGCACAGGCCGTTATTGATGAT
TTCAACCTCATGGTTCAGAATGCGTTGACATTCAACGGTCCCGACCACCT
TGTCGCTCAAGAGGGGCAGAAGCTCAAGATCACGTTCGATAAGCAGATGG
CCAATTTACCTCGAGCCGATGAAGTGGAGGAGAAGAAGCCGAAGAAGTCT
GTTGCTAAGCCCTCGACAGCAATCCGTCGAGATCACCGACCCGCCCCAAG
TCCTAGCACAGCACGCGCCACCGGCGCTTCTCCCCAGGCGACAACCTTTG
CCCTGGGCCCGGAAGGCCTTCCTTTGATCCGCCGTGATTCTGCTAATGCC
GATGGGCGTCCTAAGCGTTCCATCCACCCCCCTAAACGCGATCTCCCGTA
CTCCACGAAACCGAAGAAGAAGAAATATCAGTGGGAGCTGAGATTCTGCC
AGGAGGTGCTGGATGAGCTGCACAAGCCCAAGCACTACACCTACGCGATG
CCTTTCTACCATCCCGTTGACCCTGTTGCGCTCAACATCCCTACGTATCA
CAGCATTATCAAGAAGCCCATGGATTTCTCTACTGTGCAAAGCAAATTGA
GGGCCGGCCAGTATGAGAATGCCAAGGAGTTTGAACTTGATATGCGCCTC
ATCTTGAAGAACTGTTTCAAATTCAACATTCCAGGTGACCCGACCTACAT
GGCGGGCCAGCGGCTGGAGGAAGAATTTAACAAGAAATGGGCCCAGAAGA
CACGGTATCTGGAGCAGCATGAACCGCATGTCGAGCATCACAGCGCCGAG
TCGTCCGAAGAAGAGAGCGAGGAGGACGCCGAAGAAAGCGACTATGATGC
CGAGAAGCTCAGCCTGCTGCAGAAGCAGATGGAAGAGATGACCCGCCAGA
TCGAAGCTATTACGAAGAAGAAGAAGACCCCCCCTGGAAGCAAAAAGCTC
GGAAAGACCAAGCCGGGGAAGAAGGAGAGCAAGAAGCCTAGCACTATGGG
GCTCGCTAAGAAGGAGAGCAAGAAGAGCACCACCAAGGTTTCAGCCAAAC
CGGAGAAGCAGCACTGGGTCACCTACCATGAGAAGCAGATTATTTCCAAC
GGGATTAGTAGCCTTCCTGATAAGAAGATGCAGGAGGCTCTCAAAATCAT
CCAGACTAATGTCCCGGCCCTCAAGGTAAGTTGTTTGCTTAATGTGATCT
TACTCTCGATGCAAGGCCTAACAAGTTCTGCAGGGTACCCAAGAGGCTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008859-T1.utr3p1 | KJC3_008859-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR018359 |
| DBxref | InterPro:IPR027353 |
| DBxref | InterPro:IPR036427 |
| DBxref | InterPro:IPR001487 |
| DBxref | PFAM:PF00439 |
| DBxref | PFAM:PF17035 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:3264222..3269881 + |
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