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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:3305733..3308028- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008873-T1 ID=KJC3_008873-T1|Name=KJC3_008873-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2296bp|location=Sequence derived from alignment at ch6:3305733..3308028- (Aspergillus niger KJC3) CACTCACCATGTCCCGGGGCATCCCCCCGTCATCGCCTGGCCTCCCACCT
TGATATAGTTGGTTTGTGGAGTGAGCGATCCCTCCGCCGCCATGGATAAA
TTAACCAGGAATGACCCGCTGGGCGAGTTTGTCTGTCGCTTCCCCAACTG
TGATGCCCGATACCGGCGTAAAGAGCACCTCCGCCGCCATGAGGCCAAAC
ATATCCAAGATCGGACATATCCCTGTTCCATCTGTGGTCAGGAATTCGGA
CGAAAGTATAAACCGAGATAGCTTGCAGCGCGCAAGGATCCTACGTGCTT
GTTGTTCTGTCATTAGTAACGTGCGTTAGTGACACACTGCGTCGACATCT
ACGAGTGAAACATCAGTTGAATGAACCTGTCCACCGAGCACGACGCGCCT
GTTCCAACTGTCGGGCCATCAAGGCTCGATGTGAAGGGAAGCCCGTTTGC
ACAGAATGTCAGCATCGGGGCATTCGCTGCTCTCTCCGCGAGGCTGAAGA
CTCGCCGGCGCCCGAACCCCGACCAGCGTCCGTGAGCCCGCGGCCAGCGG
TGTCCAGAGAAGAACAGTTTGTAAAAATGTTCTTTGAGCTGTTCCACCCG
CATTGGCCATTTGTGCATCGGGGGACTTTTCGCATTCGCCATGAAATTCC
CATGTTGGTCCAGTCCATGGTAGTGCTGGGCTTGTGGGCGAGCGGAGAAA
GAGGCGCGCGGTGTGCAGCTGTCGAGCTACATGAGCAGCTTAATTCGGCA
ATTCTTCAGCAAAAGGTAGATGCAGATCTATTGTGGTTATATACTGAATG
CTAATGCAGCTGCAGGAGAAATGGGATGTGTCCAATGAAGTACCTATACC
CCAGGCGGGGTCATGGCCATTGCCCATTTACCAGGCGATCCTATTACATG
TCATCTTCTCTTTGATTTATAAAACGCACGGCTCTCTCGGGATAGATCTT
AAGCCGTCTGGGCTGCGGACTGATACTGAGCTGCTGCTTAAGTGTCTGAT
CCGGAGCTGCCGCCTCAGGGGCATGTTCTACTACCCGCGCATCCTGCAGC
AGTATCAAGAACCCGCGATTGCTCAATATATGCTGGTCAGTATTGAGGAA
GTGAAACGGTTCAATATTGCTTTGTACAAAGTGTGCACGACGATCTATGG
GTCGACGGCGCTGAGCCAGATGGTGGATGGGGCATCGATGGGCAACATCT
TGTTAACCGCGGATGAATTGCAGTTTCCGCTGCCGGAGAACCATGAGTTG
TGGGATGCAGGGACACAATCAGAGTGGGATCGAGCGCTGGAGGGGATGAG
TGTGGATGGGTTGGGGGAGTATCGCGAGGAGGAATGGATATCGAAGCAGG
CTCGGATGATGCATGTATTGGGGAATATTTAGCTTCACCACATACTATCC
TATACTTGCAGTGGCTGCAGCATATCACTACAACCTACGAACACATAATG
TTCAGTCAAAAACATAAAATAAAAACAGTTAACTCCACTAACCCTACATA
AGAGAACAACCGCACTCCACCTCTCTGAACAACCAACTAGCACTACCGAA
TCATAAAATCTAAGCCTCCACCCCATCCCTCTCATTCTTCGTGATGGTAT
CCACAATCGCCGTCTCCAAATGCGGAATAACCGGATCCTTCTGCACTCTC
AACCCCTTCGTCATCCTCGCAATCGTAGTATAAAACCCCAGAACGACAAA
ACACTCCACGACCTCATCATCCGACATAATCCTCTTGGCCCACAGAATCG
TCTCCTCCTTATTGTCGTACGTGCGAATCGACTCCTCCACAAGTGTCAGA
ATACACTGCTGGCGCTCCGTCCACGTGCCCATAGCGATCAATTCCTTCGA
GGTCAGGCCCTTGCGCAGCGCCTCAATCTTGTCGTCGCCGAGCCCGTTGA
GGCGCGAGATGGGCTCGTTGATGCCGAAGAGGTACTCTGCGTTGATGAGA
CCCGTCATGCGGAGTACAATAAGCTGGTAGTCGAGGAGCTGGATGGTGCG
CTTTTCGCCGGAGAGGATGCTGTCCAGGACGGACATGATGGGGAGGAAGG
TTCCTGGGGAGCGGGCGTACAGGCGGAAGACGGCGCGGTCGATGGGGAAG
GACCGCAGGAAGGCGGCGTTGGCTTCGTGTGCTGGGGAGGGGTTGTGGAT
GTCGATGCCTTCGATTAGGGGGTATTTGGTTGTCATTTTGGTGGTGGTGG
TGGTGGCGTTGTGAAAGTTTGAGGGATTGTTTCTGAGTGAGTGTGTTGGA
AGATGTTGTATAAGATTATGCAGATGTCTGTGGTAGGGTAGAAGGG back to topCoding sequence (CDS) from alignment at ch6:3305733..3308028- >KJC3_008873-T1 ID=KJC3_008873-T1|Name=KJC3_008873-T1|organism=Aspergillus niger KJC3|type=CDS|length=3501bp|location=Sequence derived from alignment at ch6:3305733..3308028- (Aspergillus niger KJC3) GAGAAATGGGATGTGTCCAATGAAGTACCTATACCCCAGGCGGGGTCATG GCCATTGCCCATTTACCAGGCGATCCTATTACATGTCATCTTCTCTTTGA TTTATAAAACGCACGGCTCTCTCGGGATAGATCTTAAGCCGTCTGGGCTG CGGACTGATACTGAGCTGCTGCTTAAGTGTCTGATCCGGAGCTGCCGCCT CAGGGGCATGTTCTACTACCCGCGCATCCTGCAGCAGTATCAAGAACCCG CGATTGCTCAATATATGCTGGTCAGTATTGAGGAAGTGAAACGGTTCAAT ATTGCTTTGTACAAAGTGTGCACGACGATCTATGGGTCGACGGCGCTGAG CCAGATGGTGGATGGGGCATCGATGGGCAACATCTTGTTAACCGCGGATG AATTGCAGTTTCCGCTGCCGGAGAACCATGAGTTGTGGGATGCAGGGACA CAATCAGAGTGGGATCGAGCGCTGGAGGGGATGAGTGTGGATGGGTTGGG GGAGTATCGCGAGGAGGAATGGATATCGAAGCAGGCTCGGATGATGCATG TATTGGGGAATATTTAGTGACACACTGCGTCGACATCTACGAGTGAAACA TCAGTTGAATGAACCTGTCCACCGAGCACGACGCGCCTGTTCCAACTGTC GGGCCATCAAGGCTCGATGTGAAGGGAAGCCCGTTTGCACAGAATGTCAG CATCGGGGCATTCGCTGCTCTCTCCGCGAGGCTGAAGACTCGCCGGCGCC CGAACCCCGACCAGCGTCCGTGAGCCCGCGGCCAGCGGTGTCCAGAGAAG AACAGTTTGTAAAAATGTTCTTTGAGCTGTTCCACCCGCATTGGCCATTT GTGCATCGGGGGACTTTTCGCATTCGCCATGAAATTCCCATGTTGGTCCA GTCCATGGTAGTGCTGGGCTTGTGGGCGAGCGGAGAAAGAGGCGCGCGGT GTGCAGCTGTCGAGCTACATGAGCAGCTTAATTCGGCAATTCTTCAGCAA AAGATGGATAAATTAACCAGGAATGACCCGCTGGGCGAGTTTGTCTGTCG CTTCCCCAACTGTGATGCCCGATACCGGCGTAAAGAGCACCTCCGCCGCC ATGAGGCCAAACATATCCAAGATCGGACATATCCCTGTTCCATCTGTGGT CAGGAATTCGGACGAAAGAGAAATGGGATGTGTCCAATGAAGTACCTATA CCCCAGGCGGGGTCATGGCCATTGCCCATTTACCAGGCGATCCTATTACA TGTCATCTTCTCTTTGATTTATAAAACGCACGGCTCTCTCGGGATAGATC TTAAGCCGTCTGGGCTGCGGACTGATACTGAGCTGCTGCTTAAGTGTCTG ATCCGGAGCTGCCGCCTCAGGGGCATGTTCTACTACCCGCGCATCCTGCA GCAGTATCAAGAACCCGCGATTGCTCAATATATGCTGGTCAGTATTGAGG AAGTGAAACGGTTCAATATTGCTTTGTACAAAGTGTGCACGACGATCTAT GGGTCGACGGCGCTGAGCCAGATGGTGGATGGGGCATCGATGGGCAACAT CTTGTTAACCGCGGATGAATTGCAGTTTCCGCTGCCGGAGAACCATGAGT TGTGGGATGCAGGGACACAATCAGAGTGGGATCGAGCGCTGGAGGGGATG AGTGTGGATGGGTTGGGGGAGTATCGCGAGGAGGAATGGATATCGAAGCA GGCTCGGATGATGCATGTATTGGGGAATATTTAGTGACACACTGCGTCGA CATCTACGAGTGAAACATCAGTTGAATGAACCTGTCCACCGAGCACGACG CGCCTGTTCCAACTGTCGGGCCATCAAGGCTCGATGTGAAGGGAAGCCCG TTTGCACAGAATGTCAGCATCGGGGCATTCGCTGCTCTCTCCGCGAGGCT GAAGACTCGCCGGCGCCCGAACCCCGACCAGCGTCCGTGAGCCCGCGGCC AGCGGTGTCCAGAGAAGAACAGTTTGTAAAAATGTTCTTTGAGCTGTTCC ACCCGCATTGGCCATTTGTGCATCGGGGGACTTTTCGCATTCGCCATGAA ATTCCCATGTTGGTCCAGTCCATGGTAGTGCTGGGCTTGTGGGCGAGCGG AGAAAGAGGCGCGCGGTGTGCAGCTGTCGAGCTACATGAGCAGCTTAATT CGGCAATTCTTCAGCAAAAGATGGATAAATTAACCAGGAATGACCCGCTG GGCGAGTTTGTCTGTCGCTTCCCCAACTGTGATGCCCGATACCGGCGTAA AGAGCACCTCCGCCGCCATGAGGCCAAACATATCCAAGATCGGACATATC CCTGTTCCATCTGTGGTCAGGAATTCGGACGAAAGAGAAATGGGATGTGT CCAATGAAGTACCTATACCCCAGGCGGGGTCATGGCCATTGCCCATTTAC CAGGCGATCCTATTACATGTCATCTTCTCTTTGATTTATAAAACGCACGG CTCTCTCGGGATAGATCTTAAGCCGTCTGGGCTGCGGACTGATACTGAGC TGCTGCTTAAGTGTCTGATCCGGAGCTGCCGCCTCAGGGGCATGTTCTAC TACCCGCGCATCCTGCAGCAGTATCAAGAACCCGCGATTGCTCAATATAT GCTGGTCAGTATTGAGGAAGTGAAACGGTTCAATATTGCTTTGTACAAAG TGTGCACGACGATCTATGGGTCGACGGCGCTGAGCCAGATGGTGGATGGG GCATCGATGGGCAACATCTTGTTAACCGCGGATGAATTGCAGTTTCCGCT GCCGGAGAACCATGAGTTGTGGGATGCAGGGACACAATCAGAGTGGGATC GAGCGCTGGAGGGGATGAGTGTGGATGGGTTGGGGGAGTATCGCGAGGAG GAATGGATATCGAAGCAGGCTCGGATGATGCATGTATTGGGGAATATTTA GTGACACACTGCGTCGACATCTACGAGTGAAACATCAGTTGAATGAACCT GTCCACCGAGCACGACGCGCCTGTTCCAACTGTCGGGCCATCAAGGCTCG ATGTGAAGGGAAGCCCGTTTGCACAGAATGTCAGCATCGGGGCATTCGCT GCTCTCTCCGCGAGGCTGAAGACTCGCCGGCGCCCGAACCCCGACCAGCG TCCGTGAGCCCGCGGCCAGCGGTGTCCAGAGAAGAACAGTTTGTAAAAAT GTTCTTTGAGCTGTTCCACCCGCATTGGCCATTTGTGCATCGGGGGACTT TTCGCATTCGCCATGAAATTCCCATGTTGGTCCAGTCCATGGTAGTGCTG GGCTTGTGGGCGAGCGGAGAAAGAGGCGCGCGGTGTGCAGCTGTCGAGCT ACATGAGCAGCTTAATTCGGCAATTCTTCAGCAAAAGATGGATAAATTAA CCAGGAATGACCCGCTGGGCGAGTTTGTCTGTCGCTTCCCCAACTGTGAT GCCCGATACCGGCGTAAAGAGCACCTCCGCCGCCATGAGGCCAAACATAT CCAAGATCGGACATATCCCTGTTCCATCTGTGGTCAGGAATTCGGACGAA A back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
Term | Definition |
GO:0005634 | nucleus |
GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
Term | Definition |
GO:0006351 | transcription, DNA-templated |
GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
Term | Definition |
GO:0003677 | DNA binding |
GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_008873-T1.utr3p1 | KJC3_008873-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
KJC3_008873-T1.utr5p1 | KJC3_008873-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
Property Name | Value |
Note | antiSMASH:Cluster_6.18 |
DBxref | InterPro:IPR036236 |
DBxref | InterPro:IPR007219 |
DBxref | InterPro:IPR036864 |
DBxref | InterPro:IPR013087 |
DBxref | InterPro:IPR001138 |
DBxref | PFAM:PF00096 |
Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
ch6 | supercontig | ch6:3305733..3308028 - |
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