|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:3363219..3365098- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008888-T1 ID=KJC3_008888-T1|Name=KJC3_008888-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1880bp|location=Sequence derived from alignment at ch6:3363219..3365098- (Aspergillus niger KJC3)
ACCGAACAAACCGACATGACACGCGTCTCCACACAAGCATCATCACAGCT
GACTCATCATGACGTACATCACCCAACGAACTACATTATGAAGTTTATCC
TTCCAAGGCAACTCGGGAAAATCCCTACGCCAGCAAGAAGAACAATTACA
TTTATAGATTAATCCTAATTCAAATCTACCGGCTTCATACCAGTACTTTT
ACCCCTGATCCCGGTGCAGCTTTCATCGCCCTATCTGGTGGATACTATAT
ATCTTTCTCTCCTAGAGGATACAAGTGCATATATGAACTTCCATCTACAA
TAGCCGATGACGTGACCGCAATGCGGTCAATTCTGGGTCGAGTTCCTCGA
GTCGGGCATGTCCTCCCACAAGTTCCGCGTGCACGATGGAACACCTGCAG
TATCGCTCCTGCTATATTAGGCGCCGCGACGACGAGAGGAGGGTACAATG
GGAGTGCGCATATGCAGCCCAATAGGGGTGCGGTCTGGATGCCACTAGAC
CGGAGGTGGTTCCGTGCAGGAATTCCTGGTGGTAGCGGGATGAGAAACAC
CCGGACGAAAGAGCAATTGGAGAGGTTGAGATTGAGGGATCGGACGGGGG
CTGTGCAGGAGGAGCAGAAGGGAGGAGACTCAGGGGGCAAGTTGGAGGAT
GCGATGACGAAGGGTATATCTCTATCTTGTCTTGTTCTCCAAAACCAGGG
TATGTGTTAATACTGTACAGGCAAGCTATTAACCACACCGTCGAGGTTAT
TCAAGCTGTTGATTCCGCTGTCGACCGGCTATCAGGGGGAGCATAAAGGT
ATACCTCACTGAAATTCATGGCATTGTGGAAGAAAGTGTACTGACGACAC
AGACATCGAACCAATAGCTATTCTCGTCCACCCCCAACAACCACTCTCTC
ACCTGGAACGACTAATCCAGTCCGAAGTTCCAGCCATTAAGAAAGAAGAC
GGCCAAACCCGCCCCCCAACCGTCTCCTTCATCGCCCTACAAATCGAAGA
CCACCCCATTCGGCCCCGAAAAGCCGTCTACGAAGGCACCGGCGCTGAAG
TACACCAGCTCGACGAAATGGGTCGCATCGACGACGGCGAAGGCAAGCGG
ACCCCCACAGAAGACGATACTTACACGTACCTGCGCCGCACGGAGCCCAG
CAAGAAGGGAGAAGAATCAGAAGGCGGCGGCAGGAGGGAGCAGCGCTTCG
TACGCTGGTCACAATCCACCGAGATTGGAGACTTCATCCGCGACGCAGCA
CGGGCCCGGGAATTTATCGTCTCTGTGGAAGGCGCACCAGCCGGGGTGCA
TCAGATCCGAGTAGCGGTGCCATCGTTCGATGAGCGGACGTACTTCCTGC
GAATGAGACTGCGGAAGATCTCCGGACGGATCAAGGGCATTGCGGAGATC
AAGCACGAGTGTGATGCGCTAGCGCACCGGGGAGCACAGCGGGTGGCGAT
GGGAGGGCTGGGAATCCTGGCGATGTGGTGGTACCTGGTGTACAGGTTGA
CGTTTGAGACGGATCTGGGCTGGGATACGATGGAGCCGGTGACGTATCTG
GTGAGTTTGTCGACGCTGATGGGGGGATACCTCTGGTTTCTGTACCATAA
CCGGGAGATATCGTACCGGTCAGCGCTGGATTTTACGATCAATGCGCGGC
AGAAGAAGCTGTATCAGGAGAAGGGGATTGATTTGCAGTTGTGGGAGTCA
TTGATTGACGAGGGAAATACGTTGCGCAAGGAGATCAAGAATATCGCGGC
GGAGTATGATGTGGAGTGGGATGAGAGGAAGGATGAAAGGGATCAGAGAG
TCACGGAGGCGTTGAAGCAGGAGAGGACACAGAAGAATGGAAATAAGAGG
AGAGGTGATGAGGAGGAGGATGGAGATTAG back to topCoding sequence (CDS) from alignment at ch6:3363219..3365098- >KJC3_008888-T1 ID=KJC3_008888-T1|Name=KJC3_008888-T1|organism=Aspergillus niger KJC3|type=CDS|length=4302bp|location=Sequence derived from alignment at ch6:3363219..3365098- (Aspergillus niger KJC3)
CTATTCTCGTCCACCCCCAACAACCACTCTCTCACCTGGAACGACTAATC
CAGTCCGAAGTTCCAGCCATTAAGAAAGAAGACGGCCAAACCCGCCCCCC
AACCGTCTCCTTCATCGCCCTACAAATCGAAGACCACCCCATTCGGCCCC
GAAAAGCCGTCTACGAAGGCACCGGCGCTGAAGTACACCAGCTCGACGAA
ATGGGTCGCATCGACGACGGCGAAGGCAAGCGGACCCCCACAGAAGACGA
TACTTACACGTACCTGCGCCGCACGGAGCCCAGCAAGAAGGGAGAAGAAT
CAGAAGGCGGCGGCAGGAGGGAGCAGCGCTTCGTACGCTGGTCACAATCC
ACCGAGATTGGAGACTTCATCCGCGACGCAGCACGGGCCCGGGAATTTAT
CGTCTCTGTGGAAGGCGCACCAGCCGGGGTGCATCAGATCCGAGTAGCGG
TGCCATCGTTCGATGAGCGGACGTACTTCCTGCGAATGAGACTGCGGAAG
ATCTCCGGACGGATCAAGGGCATTGCGGAGATCAAGCACGAGTGTGATGC
GCTAGCGCACCGGGGAGCACAGCGGGTGGCGATGGGAGGGCTGGGAATCC
TGGCGATGTGGTGGTACCTGGTGTACAGGTTGACGTTTGAGACGGATCTG
GGCTGGGATACGATGGAGCCGGTGACGTATCTGGTGAGTTTGTCGACGCT
GATGGGGGGATACCTCTGGTTTCTGTACCATAACCGGGAGATATCGTACC
GGTCAGCGCTGGATTTTACGATCAATGCGCGGCAGAAGAAGCTGTATCAG
GAGAAGGGGATTGATTTGCAGTTGTGGGAGTCATTGATTGACGAGGGAAA
TACGTTGCGCAAGGAGATCAAGAATATCGCGGCGGAGTATGATGTGGAGT
GGGATGAGAGGAAGGATGAAAGGGATCAGAGAGTCACGGAGGCGTTGAAG
CAGGAGAGGACACAGAAGAATGGAAATAAGAGGAGAGGTGATGAGGAGGA
GGATGGAGATTAGGCAAGCTATTAACCACACCGTCGAGGTTATTCAAGCT
GTTGATTCCGCTGTCGACCGGCTATCAGGGGGAGCATAAAGATGCGGTCA
ATTCTGGGTCGAGTTCCTCGAGTCGGGCATGTCCTCCCACAAGTTCCGCG
TGCACGATGGAACACCTGCAGTATCGCTCCTGCTATATTAGGCGCCGCGA
CGACGAGAGGAGGGTACAATGGGAGTGCGCATATGCAGCCCAATAGGGGT
GCGGTCTGGATGCCACTAGACCGGAGGTGGTTCCGTGCAGGAATTCCTGG
TGGTAGCGGGATGAGAAACACCCGGACGAAAGAGCAATTGGAGAGGTTGA
GATTGAGGGATCGGACGGGGGCTGTGCAGGAGGAGCAGAAGGGAGGAGAC
TCAGGGGGCAAGTTGGAGGATGCGATGACGAAGGCTATTCTCGTCCACCC
CCAACAACCACTCTCTCACCTGGAACGACTAATCCAGTCCGAAGTTCCAG
CCATTAAGAAAGAAGACGGCCAAACCCGCCCCCCAACCGTCTCCTTCATC
GCCCTACAAATCGAAGACCACCCCATTCGGCCCCGAAAAGCCGTCTACGA
AGGCACCGGCGCTGAAGTACACCAGCTCGACGAAATGGGTCGCATCGACG
ACGGCGAAGGCAAGCGGACCCCCACAGAAGACGATACTTACACGTACCTG
CGCCGCACGGAGCCCAGCAAGAAGGGAGAAGAATCAGAAGGCGGCGGCAG
GAGGGAGCAGCGCTTCGTACGCTGGTCACAATCCACCGAGATTGGAGACT
TCATCCGCGACGCAGCACGGGCCCGGGAATTTATCGTCTCTGTGGAAGGC
GCACCAGCCGGGGTGCATCAGATCCGAGTAGCGGTGCCATCGTTCGATGA
GCGGACGTACTTCCTGCGAATGAGACTGCGGAAGATCTCCGGACGGATCA
AGGGCATTGCGGAGATCAAGCACGAGTGTGATGCGCTAGCGCACCGGGGA
GCACAGCGGGTGGCGATGGGAGGGCTGGGAATCCTGGCGATGTGGTGGTA
CCTGGTGTACAGGTTGACGTTTGAGACGGATCTGGGCTGGGATACGATGG
AGCCGGTGACGTATCTGGTGAGTTTGTCGACGCTGATGGGGGGATACCTC
TGGTTTCTGTACCATAACCGGGAGATATCGTACCGGTCAGCGCTGGATTT
TACGATCAATGCGCGGCAGAAGAAGCTGTATCAGGAGAAGGGGATTGATT
TGCAGTTGTGGGAGTCATTGATTGACGAGGGAAATACGTTGCGCAAGGAG
ATCAAGAATATCGCGGCGGAGTATGATGTGGAGTGGGATGAGAGGAAGGA
TGAAAGGGATCAGAGAGTCACGGAGGCGTTGAAGCAGGAGAGGACACAGA
AGAATGGAAATAAGAGGAGAGGTGATGAGGAGGAGGATGGAGATTAGGCA
AGCTATTAACCACACCGTCGAGGTTATTCAAGCTGTTGATTCCGCTGTCG
ACCGGCTATCAGGGGGAGCATAAAGATGCGGTCAATTCTGGGTCGAGTTC
CTCGAGTCGGGCATGTCCTCCCACAAGTTCCGCGTGCACGATGGAACACC
TGCAGTATCGCTCCTGCTATATTAGGCGCCGCGACGACGAGAGGAGGGTA
CAATGGGAGTGCGCATATGCAGCCCAATAGGGGTGCGGTCTGGATGCCAC
TAGACCGGAGGTGGTTCCGTGCAGGAATTCCTGGTGGTAGCGGGATGAGA
AACACCCGGACGAAAGAGCAATTGGAGAGGTTGAGATTGAGGGATCGGAC
GGGGGCTGTGCAGGAGGAGCAGAAGGGAGGAGACTCAGGGGGCAAGTTGG
AGGATGCGATGACGAAGGCTATTCTCGTCCACCCCCAACAACCACTCTCT
CACCTGGAACGACTAATCCAGTCCGAAGTTCCAGCCATTAAGAAAGAAGA
CGGCCAAACCCGCCCCCCAACCGTCTCCTTCATCGCCCTACAAATCGAAG
ACCACCCCATTCGGCCCCGAAAAGCCGTCTACGAAGGCACCGGCGCTGAA
GTACACCAGCTCGACGAAATGGGTCGCATCGACGACGGCGAAGGCAAGCG
GACCCCCACAGAAGACGATACTTACACGTACCTGCGCCGCACGGAGCCCA
GCAAGAAGGGAGAAGAATCAGAAGGCGGCGGCAGGAGGGAGCAGCGCTTC
GTACGCTGGTCACAATCCACCGAGATTGGAGACTTCATCCGCGACGCAGC
ACGGGCCCGGGAATTTATCGTCTCTGTGGAAGGCGCACCAGCCGGGGTGC
ATCAGATCCGAGTAGCGGTGCCATCGTTCGATGAGCGGACGTACTTCCTG
CGAATGAGACTGCGGAAGATCTCCGGACGGATCAAGGGCATTGCGGAGAT
CAAGCACGAGTGTGATGCGCTAGCGCACCGGGGAGCACAGCGGGTGGCGA
TGGGAGGGCTGGGAATCCTGGCGATGTGGTGGTACCTGGTGTACAGGTTG
ACGTTTGAGACGGATCTGGGCTGGGATACGATGGAGCCGGTGACGTATCT
GGTGAGTTTGTCGACGCTGATGGGGGGATACCTCTGGTTTCTGTACCATA
ACCGGGAGATATCGTACCGGTCAGCGCTGGATTTTACGATCAATGCGCGG
CAGAAGAAGCTGTATCAGGAGAAGGGGATTGATTTGCAGTTGTGGGAGTC
ATTGATTGACGAGGGAAATACGTTGCGCAAGGAGATCAAGAATATCGCGG
CGGAGTATGATGTGGAGTGGGATGAGAGGAAGGATGAAAGGGATCAGAGA
GTCACGGAGGCGTTGAAGCAGGAGAGGACACAGAAGAATGGAAATAAGAG
GAGAGGTGATGAGGAGGAGGATGGAGATTAGGCAAGCTATTAACCACACC
GTCGAGGTTATTCAAGCTGTTGATTCCGCTGTCGACCGGCTATCAGGGGG
AGCATAAAGATGCGGTCAATTCTGGGTCGAGTTCCTCGAGTCGGGCATGT
CCTCCCACAAGTTCCGCGTGCACGATGGAACACCTGCAGTATCGCTCCTG
CTATATTAGGCGCCGCGACGACGAGAGGAGGGTACAATGGGAGTGCGCAT
ATGCAGCCCAATAGGGGTGCGGTCTGGATGCCACTAGACCGGAGGTGGTT
CCGTGCAGGAATTCCTGGTGGTAGCGGGATGAGAAACACCCGGACGAAAG
AGCAATTGGAGAGGTTGAGATTGAGGGATCGGACGGGGGCTGTGCAGGAG
GAGCAGAAGGGAGGAGACTCAGGGGGCAAGTTGGAGGATGCGATGACGAA
GG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008888-T1.utr5p1 | KJC3_008888-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR006769 |
| DBxref | PFAM:PF04678 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:3363219..3365098 - |
|
