You are here

Home

KJC3_008912-T1, KJC3_008912-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_008912-T1
Unique NameKJC3_008912-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:3447250..3448421-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_008912-T1 ID=KJC3_008912-T1|Name=KJC3_008912-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1172bp|location=Sequence derived from alignment at ch6:3447250..3448421- (Aspergillus niger KJC3)
ATGTCCCAGTACCGTGAACTGGGTGAGGATTCTGGAAAAATGGCCATTTC
CTACGCAAGTGGACTTCCAGCGGACCATACTCCTGCTCTTCCGTCATTTC
GAGAGGTGAGCCAACATTACTACGCCTGGCAAAACCGACCGGTGGTTCCG
CCGTAAGAGAATCAGTGAGACTAACGTACTTTTTGATAGCTACTCCCGCC
TCATCTCCATGATGAGATCGAATCGACCTCATATTTCACTTCTCGCCAGC
ATGCGCGCGAGCGGCCTACATCAGCAGCCCACGAATTGACGTCCAATCCC
CGCCCTTTCTCTGATCGTCCCTACGGATCACCCCCGAAATTGCCATTCGC
TGGCGATTATGCCGCCCGGTCGAGTGAACCCCAAAGCCGGATGGCTGGGC
ACCCGACCGACCCCATCACAGGCTCTCCTCGTTACGCTTCTCGTGGTCCG
AGTCCTATTCTACCTTCCATCCGGGACCTTCAGTCGCTCCCTGAACGGGG
ACTGAATACTTCGGGCGCCGCTTACCCAGATTCAAGGGCCCTTTCTCGAC
CAGACTTCGCAGCGCAGGAATTCAGGGCGGCCCCGGTTGGCCCCCACGCA
TATCCCCCAACCAACATTCCAGGCACAGTACCGGGTGATCGGAGGAGCGT
GGATTCTTTTCCCGTCATGCCCAATCAGACTGGCTATGCCTATCCCGCAA
TGGCTTACCAGAGTGATTCCGAACAACCTTCTCCGCAATCCCTTTCTCAT
GCTCAACAATCAAATTTCGGTATCCTTGGAGATTCGATCGATCCCAAGAA
CAAGCGGAGACGGGGCAACCTGCCCAAGCCAGTCACCGACATTCTGCGTG
CCTGGTTCCATGAACATCTTGACCATCCGTATCCCAGTGAAGAGGACAAA
CAGATGTTCATGACCCGCACTGGACTCACTATCAGCCAGGTTAGTAGCAG
TTCTCCCCCCTTGTCTAACAAATCAGCACATGCTAATCAAAGATCTATAT
ACAGATCAGCAATTGGTTCATCAATGCTAGACGGCGTCAACTTCCTGCTC
TCCGGAACCAGATGCGAAACGGTGGAAACGACATTGACTCTCAACGGCAA
TCTCCCTTCAGTGACATGGACCAGACGTCCCCGGAATCAATGCCGTCTCC
TCACCAGATCGTCAAATCATAA
back to top

Coding sequence (CDS) from alignment at ch6:3447250..3448421-

>KJC3_008912-T1 ID=KJC3_008912-T1|Name=KJC3_008912-T1|organism=Aspergillus niger KJC3|type=CDS|length=3069bp|location=Sequence derived from alignment at ch6:3447250..3448421- (Aspergillus niger KJC3)
ATCAGCAATTGGTTCATCAATGCTAGACGGCGTCAACTTCCTGCTCTCCG
GAACCAGATGCGAAACGGTGGAAACGACATTGACTCTCAACGGCAATCTC
CCTTCAGTGACATGGACCAGACGTCCCCGGAATCAATGCCGTCTCCTCAC
CAGATCGTCAAATCATAACTACTCCCGCCTCATCTCCATGATGAGATCGA
ATCGACCTCATATTTCACTTCTCGCCAGCATGCGCGCGAGCGGCCTACAT
CAGCAGCCCACGAATTGACGTCCAATCCCCGCCCTTTCTCTGATCGTCCC
TACGGATCACCCCCGAAATTGCCATTCGCTGGCGATTATGCCGCCCGGTC
GAGTGAACCCCAAAGCCGGATGGCTGGGCACCCGACCGACCCCATCACAG
GCTCTCCTCGTTACGCTTCTCGTGGTCCGAGTCCTATTCTACCTTCCATC
CGGGACCTTCAGTCGCTCCCTGAACGGGGACTGAATACTTCGGGCGCCGC
TTACCCAGATTCAAGGGCCCTTTCTCGACCAGACTTCGCAGCGCAGGAAT
TCAGGGCGGCCCCGGTTGGCCCCCACGCATATCCCCCAACCAACATTCCA
GGCACAGTACCGGGTGATCGGAGGAGCGTGGATTCTTTTCCCGTCATGCC
CAATCAGACTGGCTATGCCTATCCCGCAATGGCTTACCAGAGTGATTCCG
AACAACCTTCTCCGCAATCCCTTTCTCATGCTCAACAATCAAATTTCGGT
ATCCTTGGAGATTCGATCGATCCCAAGAACAAGCGGAGACGGGGCAACCT
GCCCAAGCCAGTCACCGACATTCTGCGTGCCTGGTTCCATGAACATCTTG
ACCATCCGTATCCCAGTGAAGAGGACAAACAGATGTTCATGACCCGCACT
GGACTCACTATCAGCCAGATGTCCCAGTACCGTGAACTGGGTGAGGATTC
TGGAAAAATGGCCATTTCCTACGCAAGTGGACTTCCAGCGGACCATACTC
CTGCTCTTCCGTCATTTCGAGAGATCAGCAATTGGTTCATCAATGCTAGA
CGGCGTCAACTTCCTGCTCTCCGGAACCAGATGCGAAACGGTGGAAACGA
CATTGACTCTCAACGGCAATCTCCCTTCAGTGACATGGACCAGACGTCCC
CGGAATCAATGCCGTCTCCTCACCAGATCGTCAAATCATAACTACTCCCG
CCTCATCTCCATGATGAGATCGAATCGACCTCATATTTCACTTCTCGCCA
GCATGCGCGCGAGCGGCCTACATCAGCAGCCCACGAATTGACGTCCAATC
CCCGCCCTTTCTCTGATCGTCCCTACGGATCACCCCCGAAATTGCCATTC
GCTGGCGATTATGCCGCCCGGTCGAGTGAACCCCAAAGCCGGATGGCTGG
GCACCCGACCGACCCCATCACAGGCTCTCCTCGTTACGCTTCTCGTGGTC
CGAGTCCTATTCTACCTTCCATCCGGGACCTTCAGTCGCTCCCTGAACGG
GGACTGAATACTTCGGGCGCCGCTTACCCAGATTCAAGGGCCCTTTCTCG
ACCAGACTTCGCAGCGCAGGAATTCAGGGCGGCCCCGGTTGGCCCCCACG
CATATCCCCCAACCAACATTCCAGGCACAGTACCGGGTGATCGGAGGAGC
GTGGATTCTTTTCCCGTCATGCCCAATCAGACTGGCTATGCCTATCCCGC
AATGGCTTACCAGAGTGATTCCGAACAACCTTCTCCGCAATCCCTTTCTC
ATGCTCAACAATCAAATTTCGGTATCCTTGGAGATTCGATCGATCCCAAG
AACAAGCGGAGACGGGGCAACCTGCCCAAGCCAGTCACCGACATTCTGCG
TGCCTGGTTCCATGAACATCTTGACCATCCGTATCCCAGTGAAGAGGACA
AACAGATGTTCATGACCCGCACTGGACTCACTATCAGCCAGATGTCCCAG
TACCGTGAACTGGGTGAGGATTCTGGAAAAATGGCCATTTCCTACGCAAG
TGGACTTCCAGCGGACCATACTCCTGCTCTTCCGTCATTTCGAGAGATCA
GCAATTGGTTCATCAATGCTAGACGGCGTCAACTTCCTGCTCTCCGGAAC
CAGATGCGAAACGGTGGAAACGACATTGACTCTCAACGGCAATCTCCCTT
CAGTGACATGGACCAGACGTCCCCGGAATCAATGCCGTCTCCTCACCAGA
TCGTCAAATCATAACTACTCCCGCCTCATCTCCATGATGAGATCGAATCG
ACCTCATATTTCACTTCTCGCCAGCATGCGCGCGAGCGGCCTACATCAGC
AGCCCACGAATTGACGTCCAATCCCCGCCCTTTCTCTGATCGTCCCTACG
GATCACCCCCGAAATTGCCATTCGCTGGCGATTATGCCGCCCGGTCGAGT
GAACCCCAAAGCCGGATGGCTGGGCACCCGACCGACCCCATCACAGGCTC
TCCTCGTTACGCTTCTCGTGGTCCGAGTCCTATTCTACCTTCCATCCGGG
ACCTTCAGTCGCTCCCTGAACGGGGACTGAATACTTCGGGCGCCGCTTAC
CCAGATTCAAGGGCCCTTTCTCGACCAGACTTCGCAGCGCAGGAATTCAG
GGCGGCCCCGGTTGGCCCCCACGCATATCCCCCAACCAACATTCCAGGCA
CAGTACCGGGTGATCGGAGGAGCGTGGATTCTTTTCCCGTCATGCCCAAT
CAGACTGGCTATGCCTATCCCGCAATGGCTTACCAGAGTGATTCCGAACA
ACCTTCTCCGCAATCCCTTTCTCATGCTCAACAATCAAATTTCGGTATCC
TTGGAGATTCGATCGATCCCAAGAACAAGCGGAGACGGGGCAACCTGCCC
AAGCCAGTCACCGACATTCTGCGTGCCTGGTTCCATGAACATCTTGACCA
TCCGTATCCCAGTGAAGAGGACAAACAGATGTTCATGACCCGCACTGGAC
TCACTATCAGCCAGATGTCCCAGTACCGTGAACTGGGTGAGGATTCTGGA
AAAATGGCCATTTCCTACGCAAGTGGACTTCCAGCGGACCATACTCCTGC
TCTTCCGTCATTTCGAGAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_008912KJC3_008912Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008912-T1KJC3_008912-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008912-T1.cdsKJC3_008912-T1.cdsAspergillus niger KJC3CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_008912-T1.exon3KJC3_008912-T1.exon3Aspergillus niger KJC3exon
KJC3_008912-T1.exon2KJC3_008912-T1.exon2Aspergillus niger KJC3exon
KJC3_008912-T1.exon1KJC3_008912-T1.exon1Aspergillus niger KJC3exon


Properties
Property NameValue
DBxrefInterPro:IPR009057
DBxrefInterPro:IPR008422
DBxrefInterPro:IPR001356
DBxrefPFAM:PF00046
DBxrefPFAM:PF05920
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:3447250..3448421 -
Powered by Drupal