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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:3521617..3523744+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008938-T1 ID=KJC3_008938-T1|Name=KJC3_008938-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2128bp|location=Sequence derived from alignment at ch6:3521617..3523744+ (Aspergillus niger KJC3)
CACCGATTCGGCGACCTACAAAGCCCTACCGTAGCATATCGGAACCATGA
TATCTCTCAGCTGAAGCAAGCACCAACCAGTCCTTCCCCAATACATCAGA
TGAACGAGACATCTGACCAACAACCTACCCTTTTCTCTCCTGCTGGCAAC
CCAACTGGGAATCGATGCGGTCATTGCTCTCGTGACCGTTCTTCTCTCCC
ATAGCACCAACTTGTCCTTTCCCACGGGAAACCCCTTCCCTCCCATATCA
GCAACTTGCTACCAGATAGAACACAGCCAGCCAGCCTATCAGCCCATCCA
ATCAATACCAAACAATCAATTCGACCGGGCAAAATCCCCGACCTGTAACC
TGGTATCCAAGTCTCACATTCCGAGCAGGCAGGTCTCAACCAAGTCAAAA
TCAAGGGGGATGCAAAGCAATCGGCGATTGAAGCTTATCGATCGGCGACC
GTCTTATCACACCATCAACGCCATTATGGCGATGCACACCGCAATTCTTG
ACCAGTGAGATATGTTGTCGCTATTTCGCGGAATTTGGGTACTTTTGAAT
GTCCTGGAAAGTGATATAGGGGGGCGGTGATGCGTATGTCCTGTGGTCAT
GGCGTCAATGGGCTTGTGGTTGCTTCTTTAAAGATATCACTAGTTGCTGT
TCTCGTTTTGGTGCAGTGGCGGATAAGATAAGGGATATGGATAGATTACT
ACTGAATTAGGACAGGAATCCGGGGACCACGAAAAGCCTTCAGGTCGGCG
AGGTAGGGAATCGGGGATCGGGCTCAAGATGACATTCGTATAGAGTCATA
TTAGCATCTCGCCCGAGAAGAGAGAGGAATTTTTGTAAGAGTTTTCTACG
TATAAAAAGAGAAGACATTCTAGAAAAAAGAATTACTTAATAGACATACG
ATTCAGGTTATTTGTACGAGGTCAAAAAAGCTGCATGACTGAAATATACT
CACCACTATCGCAACATCTACACAACGAACAGAGGAGGCACCAACAGCAC
ATGATGGAACCAATCATCCATCCCATATTCGAGAAACAAACCTCAACATG
GCAATACATCGTAGCCTGTCCAGAGACACACGAAGCCGTGATCATCGACC
CAGTCCTCGACTTCGATCCATCCCAACTCACCGTGACTACGACCTCAGCC
GATGCGCTTCTTGATTTCGCGGCCTCAAAAGGCTACCATATCACGCGAAT
CCTCGAGACACACGCTCACGCCGACCATCTCACCGCAGCCCACTACATTC
AGACCAAGCTTCATCAACAGCGCTCATCCTCTTCATCAACAGAATCAAAG
ACAAGTCCCAAAAAAGTCCCCATCTGCACCGGCCACCGCATCCGCCAAGT
CCAAGCCACATTCGCACAACGATACAACATCCCGCCCAACGACATCGACA
CCGCATTCGACCACCTCTTCCAAGATGACGAGACCTTCCAAATCGGACGT
ATCACCGCCCGAGTCCTCCATCTGCCCGGCCACACGCCCGATCACAGTGG
GTACATGATAGGCACCAATGTATTCACGGGAGACTCGATCTTCAATCCGG
ATGTGGGCAGTGCGCGGTGTGATTTCCCGCATGGAGATGCTCGCGCCTTG
TATCAGACTATGCGGAAGCTGTTGGCGCTACCGGAGCATGTTAAACTATA
TACGGGGCATGATTATCCGCCTGCTGTGGAGGGGGGTGCTGCTACTACTA
CTACTTCTGTACGGGAGCCTAAGGCTTTTGTAACAGTTAAGGATCAGAAA
GAACGAAATAAGCATGTGAAGGAGGGGACGGGAGAAGAGGAGTTTGTGAA
ATGGAGACAGGAGAGGGATGCTGGGCTAGGCGAACCTCGTCTCTTGCATC
CTTCGTTGCAGGTTAACGTTCGGGGTGGAAGGATGCCTTGGGTTGATACG
GGGAATCGGCGGAGAGCGTTTCTTTGGATGCCTGTGAAAGTTCCCGAGAC
TTTGGGGAATAGGAGAGGTGTATCTACAATGACTACGTCGTCGGCGGCTA
GGATCGGGGGTAGTTCACAGGCTGTTCTGAGGTCTGTTGATAGGTTAAGG
ATGGTTATGCGGAGGTTTGTATAGATTAGCTGTGTATAGTATGATAGTAT
TAATTAGATTAACTGGGCATTATTTGTG back to topCoding sequence (CDS) from alignment at ch6:3521617..3523744+ >KJC3_008938-T1 ID=KJC3_008938-T1|Name=KJC3_008938-T1|organism=Aspergillus niger KJC3|type=CDS|length=1140bp|location=Sequence derived from alignment at ch6:3521617..3523744+ (Aspergillus niger KJC3)
ATGACTGAAATATACTCACCACTATCGCAACATCTACACAACGAACAGAG
GAGGCACCAACAGCACATGATGGAACCAATCATCCATCCCATATTCGAGA
AACAAACCTCAACATGGCAATACATCGTAGCCTGTCCAGAGACACACGAA
GCCGTGATCATCGACCCAGTCCTCGACTTCGATCCATCCCAACTCACCGT
GACTACGACCTCAGCCGATGCGCTTCTTGATTTCGCGGCCTCAAAAGGCT
ACCATATCACGCGAATCCTCGAGACACACGCTCACGCCGACCATCTCACC
GCAGCCCACTACATTCAGACCAAGCTTCATCAACAGCGCTCATCCTCTTC
ATCAACAGAATCAAAGACAAGTCCCAAAAAAGTCCCCATCTGCACCGGCC
ACCGCATCCGCCAAGTCCAAGCCACATTCGCACAACGATACAACATCCCG
CCCAACGACATCGACACCGCATTCGACCACCTCTTCCAAGATGACGAGAC
CTTCCAAATCGGACGTATCACCGCCCGAGTCCTCCATCTGCCCGGCCACA
CGCCCGATCACAGTGGGTACATGATAGGCACCAATGTATTCACGGGAGAC
TCGATCTTCAATCCGGATGTGGGCAGTGCGCGGTGTGATTTCCCGCATGG
AGATGCTCGCGCCTTGTATCAGACTATGCGGAAGCTGTTGGCGCTACCGG
AGCATGTTAAACTATATACGGGGCATGATTATCCGCCTGCTGTGGAGGGG
GGTGCTGCTACTACTACTACTTCTGTACGGGAGCCTAAGGCTTTTGTAAC
AGTTAAGGATCAGAAAGAACGAAATAAGCATGTGAAGGAGGGGACGGGAG
AAGAGGAGTTTGTGAAATGGAGACAGGAGAGGGATGCTGGGCTAGGCGAA
CCTCGTCTCTTGCATCCTTCGTTGCAGGTTAACGTTCGGGGTGGAAGGAT
GCCTTGGGTTGATACGGGGAATCGGCGGAGAGCGTTTCTTTGGATGCCTG
TGAAAGTTCCCGAGACTTTGGGGAATAGGAGAGGTGTATCTACAATGACT
ACGTCGTCGGCGGCTAGGATCGGGGGTAGTTCACAGGCTGTTCTGAGGTC
TGTTGATAGGTTAAGGATGGTTATGCGGAGGTTTGTATAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008938-T1.utr5p1 | KJC3_008938-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008938-T1.utr3p1 | KJC3_008938-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036866 |
| DBxref | InterPro:IPR001279 |
| DBxref | PFAM:PF00753 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:3521617..3523744 + |
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