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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:3559813..3562049+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008952-T1 ID=KJC3_008952-T1|Name=KJC3_008952-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2237bp|location=Sequence derived from alignment at ch6:3559813..3562049+ (Aspergillus niger KJC3)
ATGCCTGCCGCAGCAAAGAAGAGGTCTACTCCCGTCCGGATCTCGCCAAT
CAAGTCCGAAGAGTGCTCGCAGTCGCCATCAGCTAGTGAGGGTATCTCCA
CGGGGTCTGCAGACAAGAACCAGCTCAAGTTGCACAAGCGATCTCGCTCT
GGTATGTTATAGTCTCGATAGCCACTTGGCTCCTAGTCGGCTCTAACCAA
CACCTGTTACCTGCGTTAGGTTGCTTTACATGTCGCCTGCGCCGAAAGAA
GTGCGACGAGAAGCATCCCTCCTGCGGAGCCTGTGTGAACCTATGTGTGA
AATGCGAATACAAACGCCCTATCTGGTGGGGAAACGCAGAGCAACGGAGG
ATCCAGAAGGAACGCATCAAGAACAAGATCAAGCAGACCAAGATGCATGA
GCGCAATGGTGCTCTGACAGGTATGTCGTGGTTATCGGAACCTGATCGTT
CCCCCCTCTGACAGGCTATTGCGCTGCACTTAGATCCCGCCGCTCGTAGT
CGCAGTATGGCTGTGACTTCCCCAACCTCTCCGGAATATGAATTTGGTCG
CCCTGCCTTTCCGGAGCAGTATGACATCTTCGCTTCACACCTTCCCACTC
CGGCCATGAATCAACCTATCTATGCCCCAACCCACCCCTATGAGATCGAT
GTGAAGACTGAAAGACAGACTTTTGTGAACGATGTCCCCTTGCGCCACGA
CTCATGCAGTTCGACCTTCAGCACCTTTGCTCCGCCGCAGTTGAATGCCC
CGCTTCCGACATTTCCCAGTGAAGACTGGTTCCACGACGAGTACTTCGCT
CAAGTGCCTGCCCTTCCTGGAATCGACCCGGCGCTTTGTGAGCAGAGTAT
CGGCCAGACGTACGCCATGCTCCAGTCCAATATCCCAGTTAGCGATCATG
ATCGGCCGCTCCTCGACCACTTCATTCACAATGTCTTGCGCATCATCTTT
CCCGTCTTGGAGGCACATCAGCGTGGACATCTCCGAGCCCAGGCCATTCT
GCAAGCCTTGGAGACAAATAAGTGCTACCTCCACTGCTGTTTAAGTGTTG
CCGCCATCCATCTCAAGACCACGGAAGGACTCGTCGGAGAACAGATCGAC
CACGATATCATGCGCAATCGCTTCGAGGCTGTTTCGCAACTATGCCTGGC
ATTGGGTGAAGACACCAACCACGAGGAGATCCTAGATGCGACGCTAGCCA
TGATTTTCTTCCACTGCTCCGTGGGCCCGGCGGATGATTACCTCCCGGAT
ATTCCGTGGTTCGAGCACTTCCAGGCTGCCTCAAACCTTGTGCATCGGCT
TGGGCTTCCGACGGCAATTCCCGCCTGCGGGAACCCGTACATGCTACCCC
CCTTCACCATGACTCTGGCTTCGTGGATTGACATTCTAGGATCGACCATG
CACGGCAAGACTCCGGAATTCGCACACACCTACCGCGCCAAGCACCTCAG
CGGTTCATCTCTGGGACTCCGCGAGCTCATGGGCTGCGACGACCGTGTCA
TGTACCTGATTTCCGAGATCACCTGTCTGGACGCACTCAAGAGGGACGGC
AGGATCGATGAGATGGGCGTGTGTTCGCATGTCTCGGCTCTGGGGCAGCA
ACTAGAATTCACAGAACCGGTGAATCAGACTCTCGAAAGCCCATTCCTAC
CAAACGGAGCCTTTTCTCCCGAGATTCTCACCAAGAACATCACGGCCGCT
TTCCGCCTCGCAGCAAGAATCTACTTGTGCAGTCTGGTTCCTGGGTTTGA
CCGAAACCAACCGAGTACCGTCAATTTGGTCGCCGCCGTCGCCAATGTTC
TCTACGTCATCCCTTCGGGCCCCGAAGGCTTCGACCGCTCGCTCGTTTGG
CCAATCCTGATCGCTGGAGCATACTCAGGACCTGATAGCCACTTCCGCAC
CGTTCTCGCCGATCGAGCTGCTGCTCTTGGCGAGCACGCCGAACTGGGTA
GCTTTGGCCGCATGTACCGCGTCCTGAAGGAGGTATGGCGTGTGTCTGAT
GAGTCCATCCAACCCATGGAGCCGGTCGAGACCGTCGAACCTGTCGAATC
TGCTTCTGCCCCCGAAGAGCGACGGTCCTCGTCCGCCTCCTCATCCTCCG
ACGCTCCTGTGAAGGCTGAGGGCTCCGAGTCTCCCAAGGAGGGCCTCGTG
CCATGGGGTGCGAAGGAGATGAAAAAGCCATTCCTACACTGGCGCGAGAT
CATGCAGCAGAATGGCTGGGACTACCTTCTTCTTTAA back to topCoding sequence (CDS) from alignment at ch6:3559813..3562049+ >KJC3_008952-T1 ID=KJC3_008952-T1|Name=KJC3_008952-T1|organism=Aspergillus niger KJC3|type=CDS|length=6318bp|location=Sequence derived from alignment at ch6:3559813..3562049+ (Aspergillus niger KJC3)
ATGCCTGCCGCAGCAAAGAAGAGGTCTACTCCCGTCCGGATCTCGCCAAT
CAAGTCCGAAGAGTGCTCGCAGTCGCCATCAGCTAGTGAGGGTATCTCCA
CGGGGTCTGCAGACAAGAACCAGCTCAAGTTGCACAAGCGATCTCGCTCT
GGTTGCTTTACATGTCGCCTGCGCCGAAAGAAGTGCGACGAGAAGCATCC
CTCCTGCGGAGCCTGTGTGAACCTATGTGTGAAATGCGAATACAAACGCC
CTATCTGGTGGGGAAACGCAGAGCAACGGAGGATCCAGAAGGAACGCATC
AAGAACAAGATCAAGCAGACCAAGATGCATGAGCGCAATGGTGCTCTGAC
AGATCCCGCCGCTCGTAGTCGCAGTATGGCTGTGACTTCCCCAACCTCTC
CGGAATATGAATTTGGTCGCCCTGCCTTTCCGGAGCAGTATGACATCTTC
GCTTCACACCTTCCCACTCCGGCCATGAATCAACCTATCTATGCCCCAAC
CCACCCCTATGAGATCGATGTGAAGACTGAAAGACAGACTTTTGTGAACG
ATGTCCCCTTGCGCCACGACTCATGCAGTTCGACCTTCAGCACCTTTGCT
CCGCCGCAGTTGAATGCCCCGCTTCCGACATTTCCCAGTGAAGACTGGTT
CCACGACGAGTACTTCGCTCAAGTGCCTGCCCTTCCTGGAATCGACCCGG
CGCTTTGTGAGCAGAGTATCGGCCAGACGTACGCCATGCTCCAGTCCAAT
ATCCCAGTTAGCGATCATGATCGGCCGCTCCTCGACCACTTCATTCACAA
TGTCTTGCGCATCATCTTTCCCGTCTTGGAGGCACATCAGCGTGGACATC
TCCGAGCCCAGGCCATTCTGCAAGCCTTGGAGACAAATAAGTGCTACCTC
CACTGCTGTTTAAGTGTTGCCGCCATCCATCTCAAGACCACGGAAGGACT
CGTCGGAGAACAGATCGACCACGATATCATGCGCAATCGCTTCGAGGCTG
TTTCGCAACTATGCCTGGCATTGGGTGAAGACACCAACCACGAGGAGATC
CTAGATGCGACGCTAGCCATGATTTTCTTCCACTGCTCCGTGGGCCCGGC
GGATGATTACCTCCCGGATATTCCGTGGTTCGAGCACTTCCAGGCTGCCT
CAAACCTTGTGCATCGGCTTGGGCTTCCGACGGCAATTCCCGCCTGCGGG
AACCCGTACATGCTACCCCCCTTCACCATGACTCTGGCTTCGTGGATTGA
CATTCTAGGATCGACCATGCACGGCAAGACTCCGGAATTCGCACACACCT
ACCGCGCCAAGCACCTCAGCGGTTCATCTCTGGGACTCCGCGAGCTCATG
GGCTGCGACGACCGTGTCATGTACCTGATTTCCGAGATCACCTGTCTGGA
CGCACTCAAGAGGGACGGCAGGATCGATGAGATGGGCGTGTGTTCGCATG
TCTCGGCTCTGGGGCAGCAACTAGAATTCACAGAACCGGTGAATCAGACT
CTCGAAAGCCCATTCCTACCAAACGGAGCCTTTTCTCCCGAGATTCTCAC
CAAGAACATCACGGCCGCTTTCCGCCTCGCAGCAAGAATCTACTTGTGCA
GTCTGGTTCCTGGGTTTGACCGAAACCAACCGAGTACCGTCAATTTGGTC
GCCGCCGTCGCCAATGTTCTCTACGTCATCCCTTCGGGCCCCGAAGGCTT
CGACCGCTCGCTCGTTTGGCCAATCCTGATCGCTGGAGCATACTCAGGAC
CTGATAGCCACTTCCGCACCGTTCTCGCCGATCGAGCTGCTGCTCTTGGC
GAGCACGCCGAACTGGGTAGCTTTGGCCGCATGTACCGCGTCCTGAAGGA
GGTATGGCGTGTGTCTGATGAGTCCATCCAACCCATGGAGCCGGTCGAGA
CCGTCGAACCTGTCGAATCTGCTTCTGCCCCCGAAGAGCGACGGTCCTCG
TCCGCCTCCTCATCCTCCGACGCTCCTGTGAAGGCTGAGGGCTCCGAGTC
TCCCAAGGAGGGCCTCGTGCCATGGGGTGCGAAGGAGATGAAAAAGCCAT
TCCTACACTGGCGCGAGATCATGCAGCAGAATGGCTGGGACTACCTTCTT
CTTTAAATGCCTGCCGCAGCAAAGAAGAGGTCTACTCCCGTCCGGATCTC
GCCAATCAAGTCCGAAGAGTGCTCGCAGTCGCCATCAGCTAGTGAGGGTA
TCTCCACGGGGTCTGCAGACAAGAACCAGCTCAAGTTGCACAAGCGATCT
CGCTCTGGTTGCTTTACATGTCGCCTGCGCCGAAAGAAGTGCGACGAGAA
GCATCCCTCCTGCGGAGCCTGTGTGAACCTATGTGTGAAATGCGAATACA
AACGCCCTATCTGGTGGGGAAACGCAGAGCAACGGAGGATCCAGAAGGAA
CGCATCAAGAACAAGATCAAGCAGACCAAGATGCATGAGCGCAATGGTGC
TCTGACAGATCCCGCCGCTCGTAGTCGCAGTATGGCTGTGACTTCCCCAA
CCTCTCCGGAATATGAATTTGGTCGCCCTGCCTTTCCGGAGCAGTATGAC
ATCTTCGCTTCACACCTTCCCACTCCGGCCATGAATCAACCTATCTATGC
CCCAACCCACCCCTATGAGATCGATGTGAAGACTGAAAGACAGACTTTTG
TGAACGATGTCCCCTTGCGCCACGACTCATGCAGTTCGACCTTCAGCACC
TTTGCTCCGCCGCAGTTGAATGCCCCGCTTCCGACATTTCCCAGTGAAGA
CTGGTTCCACGACGAGTACTTCGCTCAAGTGCCTGCCCTTCCTGGAATCG
ACCCGGCGCTTTGTGAGCAGAGTATCGGCCAGACGTACGCCATGCTCCAG
TCCAATATCCCAGTTAGCGATCATGATCGGCCGCTCCTCGACCACTTCAT
TCACAATGTCTTGCGCATCATCTTTCCCGTCTTGGAGGCACATCAGCGTG
GACATCTCCGAGCCCAGGCCATTCTGCAAGCCTTGGAGACAAATAAGTGC
TACCTCCACTGCTGTTTAAGTGTTGCCGCCATCCATCTCAAGACCACGGA
AGGACTCGTCGGAGAACAGATCGACCACGATATCATGCGCAATCGCTTCG
AGGCTGTTTCGCAACTATGCCTGGCATTGGGTGAAGACACCAACCACGAG
GAGATCCTAGATGCGACGCTAGCCATGATTTTCTTCCACTGCTCCGTGGG
CCCGGCGGATGATTACCTCCCGGATATTCCGTGGTTCGAGCACTTCCAGG
CTGCCTCAAACCTTGTGCATCGGCTTGGGCTTCCGACGGCAATTCCCGCC
TGCGGGAACCCGTACATGCTACCCCCCTTCACCATGACTCTGGCTTCGTG
GATTGACATTCTAGGATCGACCATGCACGGCAAGACTCCGGAATTCGCAC
ACACCTACCGCGCCAAGCACCTCAGCGGTTCATCTCTGGGACTCCGCGAG
CTCATGGGCTGCGACGACCGTGTCATGTACCTGATTTCCGAGATCACCTG
TCTGGACGCACTCAAGAGGGACGGCAGGATCGATGAGATGGGCGTGTGTT
CGCATGTCTCGGCTCTGGGGCAGCAACTAGAATTCACAGAACCGGTGAAT
CAGACTCTCGAAAGCCCATTCCTACCAAACGGAGCCTTTTCTCCCGAGAT
TCTCACCAAGAACATCACGGCCGCTTTCCGCCTCGCAGCAAGAATCTACT
TGTGCAGTCTGGTTCCTGGGTTTGACCGAAACCAACCGAGTACCGTCAAT
TTGGTCGCCGCCGTCGCCAATGTTCTCTACGTCATCCCTTCGGGCCCCGA
AGGCTTCGACCGCTCGCTCGTTTGGCCAATCCTGATCGCTGGAGCATACT
CAGGACCTGATAGCCACTTCCGCACCGTTCTCGCCGATCGAGCTGCTGCT
CTTGGCGAGCACGCCGAACTGGGTAGCTTTGGCCGCATGTACCGCGTCCT
GAAGGAGGTATGGCGTGTGTCTGATGAGTCCATCCAACCCATGGAGCCGG
TCGAGACCGTCGAACCTGTCGAATCTGCTTCTGCCCCCGAAGAGCGACGG
TCCTCGTCCGCCTCCTCATCCTCCGACGCTCCTGTGAAGGCTGAGGGCTC
CGAGTCTCCCAAGGAGGGCCTCGTGCCATGGGGTGCGAAGGAGATGAAAA
AGCCATTCCTACACTGGCGCGAGATCATGCAGCAGAATGGCTGGGACTAC
CTTCTTCTTTAAATGCCTGCCGCAGCAAAGAAGAGGTCTACTCCCGTCCG
GATCTCGCCAATCAAGTCCGAAGAGTGCTCGCAGTCGCCATCAGCTAGTG
AGGGTATCTCCACGGGGTCTGCAGACAAGAACCAGCTCAAGTTGCACAAG
CGATCTCGCTCTGGTTGCTTTACATGTCGCCTGCGCCGAAAGAAGTGCGA
CGAGAAGCATCCCTCCTGCGGAGCCTGTGTGAACCTATGTGTGAAATGCG
AATACAAACGCCCTATCTGGTGGGGAAACGCAGAGCAACGGAGGATCCAG
AAGGAACGCATCAAGAACAAGATCAAGCAGACCAAGATGCATGAGCGCAA
TGGTGCTCTGACAGATCCCGCCGCTCGTAGTCGCAGTATGGCTGTGACTT
CCCCAACCTCTCCGGAATATGAATTTGGTCGCCCTGCCTTTCCGGAGCAG
TATGACATCTTCGCTTCACACCTTCCCACTCCGGCCATGAATCAACCTAT
CTATGCCCCAACCCACCCCTATGAGATCGATGTGAAGACTGAAAGACAGA
CTTTTGTGAACGATGTCCCCTTGCGCCACGACTCATGCAGTTCGACCTTC
AGCACCTTTGCTCCGCCGCAGTTGAATGCCCCGCTTCCGACATTTCCCAG
TGAAGACTGGTTCCACGACGAGTACTTCGCTCAAGTGCCTGCCCTTCCTG
GAATCGACCCGGCGCTTTGTGAGCAGAGTATCGGCCAGACGTACGCCATG
CTCCAGTCCAATATCCCAGTTAGCGATCATGATCGGCCGCTCCTCGACCA
CTTCATTCACAATGTCTTGCGCATCATCTTTCCCGTCTTGGAGGCACATC
AGCGTGGACATCTCCGAGCCCAGGCCATTCTGCAAGCCTTGGAGACAAAT
AAGTGCTACCTCCACTGCTGTTTAAGTGTTGCCGCCATCCATCTCAAGAC
CACGGAAGGACTCGTCGGAGAACAGATCGACCACGATATCATGCGCAATC
GCTTCGAGGCTGTTTCGCAACTATGCCTGGCATTGGGTGAAGACACCAAC
CACGAGGAGATCCTAGATGCGACGCTAGCCATGATTTTCTTCCACTGCTC
CGTGGGCCCGGCGGATGATTACCTCCCGGATATTCCGTGGTTCGAGCACT
TCCAGGCTGCCTCAAACCTTGTGCATCGGCTTGGGCTTCCGACGGCAATT
CCCGCCTGCGGGAACCCGTACATGCTACCCCCCTTCACCATGACTCTGGC
TTCGTGGATTGACATTCTAGGATCGACCATGCACGGCAAGACTCCGGAAT
TCGCACACACCTACCGCGCCAAGCACCTCAGCGGTTCATCTCTGGGACTC
CGCGAGCTCATGGGCTGCGACGACCGTGTCATGTACCTGATTTCCGAGAT
CACCTGTCTGGACGCACTCAAGAGGGACGGCAGGATCGATGAGATGGGCG
TGTGTTCGCATGTCTCGGCTCTGGGGCAGCAACTAGAATTCACAGAACCG
GTGAATCAGACTCTCGAAAGCCCATTCCTACCAAACGGAGCCTTTTCTCC
CGAGATTCTCACCAAGAACATCACGGCCGCTTTCCGCCTCGCAGCAAGAA
TCTACTTGTGCAGTCTGGTTCCTGGGTTTGACCGAAACCAACCGAGTACC
GTCAATTTGGTCGCCGCCGTCGCCAATGTTCTCTACGTCATCCCTTCGGG
CCCCGAAGGCTTCGACCGCTCGCTCGTTTGGCCAATCCTGATCGCTGGAG
CATACTCAGGACCTGATAGCCACTTCCGCACCGTTCTCGCCGATCGAGCT
GCTGCTCTTGGCGAGCACGCCGAACTGGGTAGCTTTGGCCGCATGTACCG
CGTCCTGAAGGAGGTATGGCGTGTGTCTGATGAGTCCATCCAACCCATGG
AGCCGGTCGAGACCGTCGAACCTGTCGAATCTGCTTCTGCCCCCGAAGAG
CGACGGTCCTCGTCCGCCTCCTCATCCTCCGACGCTCCTGTGAAGGCTGA
GGGCTCCGAGTCTCCCAAGGAGGGCCTCGTGCCATGGGGTGCGAAGGAGA
TGAAAAAGCCATTCCTACACTGGCGCGAGATCATGCAGCAGAATGGCTGG
GACTACCTTCTTCTTTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR021858 |
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR001138 |
| DBxref | PFAM:PF00172 |
| DBxref | PFAM:PF11951 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:3559813..3562049 + |
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