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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:3664670..3667111- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_008970-T1 ID=KJC3_008970-T1|Name=KJC3_008970-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2442bp|location=Sequence derived from alignment at ch6:3664670..3667111- (Aspergillus niger KJC3)
GCGGGACATGAGTAACTCCGCCATCCGCCGCCTCTGCCTTGCTCAGCCCT
GATACCCCTGGAAAACTAACCTGGTAACCTCTTCATTGTGTGCTGACCAT
GCAATCTGCTAGCAGAAATTTGCTACAGCTTCCCGTCGAAATCTTGGAGA
TAATCACGCTCCAGCTAGAGTACGCCTATGAGATCAATTCCCTCTCACAA
GCCTGTCGACGGCTGTACAACATTGCCAACAATCATCTTTTCCGATGTTA
TGCCAAAGAGTGTTCTCCGAGGGGACTAGAACGCGTCGTGAAGAACAACA
ACGCACGCGCACTATACAAGCTCCTGACCAATGGACTTAATTTCGATCAA
TACTTCTGTACAACGGGGCATGCAACACCAATCATGTTGACTATCGAAAA
GGATCTCTCGAAAATTGCAGACCTGCTGGTAGCCTATAGCGAGGTCTGCT
TAAAAAGCGATCGATGCAAATACGGTTTATCGGTCCGCGGCCCGGGCCAC
AGGGAATACGAGGATGATCTCGAGGGGGCGCTCTACCGCGCCGCCATCAA
GGGCAGCCTGGGTGTCACGAAGGTGCTTGTATCTTCTACGGGAGTAAAAA
AGTGGCAAAAGTCATGGGCTCTAGCATATGCGGTTAGTCGGGGCCAATTG
GCCTTGGCTAGGTACTTGATAGAAGAAGGAGGAGTTGATGTCAACCAGAA
GATTAATCGCACCGGATTTTTCGAATCATTCCTCGCACAGGCTGCTTATC
ATGGGAACCTGCAGATGGTAGAGCTTCTCGTGATGGCTGGTGCTAACGTC
AATAATCCGGGATTATCGCGCATTACAGAGTGTCCACTATATGTCGCTGC
TGCCAGAAACCACGAAGCAGTAGTGCAGTATCTAATCGAAAAGGGAATGT
GGTTCCATTCCGTGGGATTTTCTGACACTCTGCATTTGGCAGAATATTTC
AACTTACCGGACTACACGATCTCAAATGTTGTTAAGAGCGTTGACTTGAA
TGCAATAATAGCTGGTCCCGAATTTCAACGCTGCGGGGGCTACGCCAGAA
GCTGTGTCTATGACGTGGTTGCAGCTTGCAATGATCTACCGGTCTACCGT
GAAGCTTGGAATATGCGAGGCTCACCCCATGATTGGCAGCATCTAGCAGG
AAGCTTTGGGGCCGCCGTACTTCATGGAAGCTTGACAGTGGCGCGATATA
TAGTCGACGAAATGATAAAGTTGCCAGGAATGGTTTGGGCACAAGAATGG
CGGGAACTCGTCCGTTACACAACGTTCTACTACGACAGTGCCCCCGCCTT
TGATATATTGCTGGATTGTGGGCCACCAGCCGATCTACCAGAAGGTAGAA
AAAATTGGTTAAATGACTTGTTGTCTGAGGCCAGGAGCTACCCTAAACAC
ATGGAGATCCTTTTACAACGTGGCTATCTGGATGAAATGGTAGATATCCG
CATAATGAAAGAAATATTTGTGGGTGCGTTGGGAGCCGGCAATCTTGCAT
TTGTTTGGCGCCTCTTAAAACACTGCGGGGTGGGCCCCCTCGATGCACTG
GACGATTCGGATCCTGAGTACCATGGACAAAGTGCCTTACACATTGCGGC
GCGTTACAGCGACTTAAAAACCTTCCGTGAGTTCCTGTCTAAACAGAATT
TGACTCTGAACCCGGATCGTCCCATCTATTGCTCCGCATTGGTCAGCGCA
GCTGTGGGATACAATGTCGATGTCATCGGGTATTTTCTACAAGAAGGTTT
CGGAATCAACTCCTTATATGCAATGTTCACATCGAAAAAAGACAAAGTGA
CCGAGGCTTTGATAATCCACGTCGCCACGGCGCGGATCGGCCCCGACAAT
CGTAACGGAAAGATGGTCCGTGAAAATACCGCAGCAACAGTGAATTTCTT
GCTTGACCACGGGGCTCAGGTAGACACCAAGGATACCCTGGGGCGGACAG
CTTCATCCATTGCACTGGAGGCTGGGAACCCCGAACTCGCTAACTTGCTG
TTTCACAGAGGTGCAGATCCCCTTATTGGGCTCGAATTGCGTGATAATCT
CAGCGCGCTGGAACAACTCGTCCGGATATTCTTACGGGAGGAGTACGATA
TAAGTCACTTCACGATCCTTCAGGAGTCGTTAGAGATCATGTCTGCGAGA
GGCTATAAATATGATGATTTCCTTCGCCTTATTCCCAGGAACGAGGGCAC
ATTATCTCGTCCGAAGGTGCTCTCGCAGTTTGATGACGCCCCTGGTGTAA
GGGGGCCACTACAGCTGGCATACTACGAGGACAGAATTTATGTGCGATGG
TCACACTTCTTCTTGATCAGGGAGATGAGGAAACGATATTGGCGTGCCTT
GTATCCAAGTTCGTCTGAATGAATATGGAAAAGACGAGAAGGTGAAAGAT
GTTGGATAATACTCCAAAGGCAGCCCCCAACCCGAGAGCAAT back to topCoding sequence (CDS) from alignment at ch6:3664670..3667111- >KJC3_008970-T1 ID=KJC3_008970-T1|Name=KJC3_008970-T1|organism=Aspergillus niger KJC3|type=CDS|length=3714bp|location=Sequence derived from alignment at ch6:3664670..3667111- (Aspergillus niger KJC3)
AGGTGCAGATCCCCTTATTGGGCTCGAATTGCGTGAATGCAATCTGCTAG
CAGAAATTTGCTACAGCTTCCCGTCGAAATCTTGGAGATAATCACGCTCC
AGCTAGAGTACGCCTATGAGATCAATTCCCTCTCACAAGCCTGTCGACGG
CTGTACAACATTGCCAACAATCATCTTTTCCGATGTTATGCCAAAGAGTG
TTCTCCGAGGGGACTAGAACGCGTCGTGAAGAACAACAACGCACGCGCAC
TATACAAGCTCCTGACCAATGGACTTAATTTCGATCAATACTTCTGTACA
ACGGGGCATGCAACACCAATCATGTTGACTATCGAAAAGGATCTCTCGAA
AATTGCAGACCTGCTGGTAGCCTATAGCGAGGTCTGCTTAAAAAGCGATC
GATGCAAATACGGTTTATCGGTCCGCGGCCCGGGCCACAGGGAATACGAG
GATGATCTCGAGGGGGCGCTCTACCGCGCCGCCATCAAGGGCAGCCTGGG
TGTCACGAAGGTGCTTGTATCTTCTACGGGAGTAAAAAAGTGGCAAAAGT
CATGGGCTCTAGCATATGCGGTTAGTCGGGGCCAATTGGCCTTGGCTAGG
TACTTGATAGAAGAAGGAGGAGTTGATGTCAACCAGAAGATTAATCGCAC
CGGATTTTTCGAATCATTCCTCGCACAGGCTGCTTATCATGGGAACCTGC
AGATGGTAGAGCTTCTCGTGATGGCTGGTGCTAACGTCAATAATCCGGGA
TTATCGCGCATTACAGAGTGTCCACTATATGTCGCTGCTGCCAGAAACCA
CGAAGCAGTAGTGCAGTATCTAATCGAAAAGGGAATGTGGTTCCATTCCG
TGGGATTTTCTGACACTCTGCATTTGGCAGAATATTTCAACTTACCGGAC
TACACGATCTCAAATGTTGTTAAGAGCGTTGACTTGAATGCAATAATAGC
TGGTCCCGAATTTCAACGCTGCGGGGGCTACGCCAGAAGCTGTGTCTATG
ACGTGGTTGCAGCTTGCAATGATCTACCGGTCTACCGTGAAGCTTGGAAT
ATGCGAGGCTCACCCCATGATTGGCAGCATCTAGCAGGAAGCTTTGGGGC
CGCCGTACTTCATGGAAGCTTGACAGTGGCGCGATATATAGTCGACGAAA
TGATAAAGTTGCCAGGAATGGTTTGGGCACAAGAATGGCGGGAACTCGTC
CGTTACACAACGTTCTACTACGACAGTGCCCCCGCCTTTGATATATTGCT
GGATTGTGGGCCACCAGCCGATCTACCAGAAGGTAGAAAAAATTGGTTAA
ATGACTTGTTGTCTGAGGCCAGGAGCTACCCTAAACACATGGAGATCCTT
TTACAACGTGGCTATCTGGATGAAATGGTAGATATCCGCATAATGAAAGA
AATATTTGTGGGTGCGTTGGGAGCCGGCAATCTTGCATTTGTTTGGCGCC
TCTTAAAACACTGCGGGGTGGGCCCCCTCGATGCACTGGACGATTCGGAT
CCTGAGTACCATGGACAAAGTGCCTTACACATTGCGGCGCGTTACAGCGA
CTTAAAAACCTTCCGTGAGTTCCTGTCTAAACAGAATTTGACTCTGAACC
CGGATCGTCCCATCTATTGCTCCGCATTGGTCAGCGCAGCTGTGGGATAC
AATGTCGATGTCATCGGGTATTTTCTACAAGAAGGTTTCGGAATCAACTC
CTTATATGCAATGTTCACATCGAAAAAAGACAAAGTGACCGAGGCTTTGA
TAATCCACGTCGCCACGGCGCGGATCGGCCCCGACAATCGTAACGGAAAG
ATGGTCCGTGAAAATACCGCAGCAACAGTGAATTTCTTGCTTGACCACGG
GGCTCAGAGGTGCAGATCCCCTTATTGGGCTCGAATTGCGTGAATGCAAT
CTGCTAGCAGAAATTTGCTACAGCTTCCCGTCGAAATCTTGGAGATAATC
ACGCTCCAGCTAGAGTACGCCTATGAGATCAATTCCCTCTCACAAGCCTG
TCGACGGCTGTACAACATTGCCAACAATCATCTTTTCCGATGTTATGCCA
AAGAGTGTTCTCCGAGGGGACTAGAACGCGTCGTGAAGAACAACAACGCA
CGCGCACTATACAAGCTCCTGACCAATGGACTTAATTTCGATCAATACTT
CTGTACAACGGGGCATGCAACACCAATCATGTTGACTATCGAAAAGGATC
TCTCGAAAATTGCAGACCTGCTGGTAGCCTATAGCGAGGTCTGCTTAAAA
AGCGATCGATGCAAATACGGTTTATCGGTCCGCGGCCCGGGCCACAGGGA
ATACGAGGATGATCTCGAGGGGGCGCTCTACCGCGCCGCCATCAAGGGCA
GCCTGGGTGTCACGAAGGTGCTTGTATCTTCTACGGGAGTAAAAAAGTGG
CAAAAGTCATGGGCTCTAGCATATGCGGTTAGTCGGGGCCAATTGGCCTT
GGCTAGGTACTTGATAGAAGAAGGAGGAGTTGATGTCAACCAGAAGATTA
ATCGCACCGGATTTTTCGAATCATTCCTCGCACAGGCTGCTTATCATGGG
AACCTGCAGATGGTAGAGCTTCTCGTGATGGCTGGTGCTAACGTCAATAA
TCCGGGATTATCGCGCATTACAGAGTGTCCACTATATGTCGCTGCTGCCA
GAAACCACGAAGCAGTAGTGCAGTATCTAATCGAAAAGGGAATGTGGTTC
CATTCCGTGGGATTTTCTGACACTCTGCATTTGGCAGAATATTTCAACTT
ACCGGACTACACGATCTCAAATGTTGTTAAGAGCGTTGACTTGAATGCAA
TAATAGCTGGTCCCGAATTTCAACGCTGCGGGGGCTACGCCAGAAGCTGT
GTCTATGACGTGGTTGCAGCTTGCAATGATCTACCGGTCTACCGTGAAGC
TTGGAATATGCGAGGCTCACCCCATGATTGGCAGCATCTAGCAGGAAGCT
TTGGGGCCGCCGTACTTCATGGAAGCTTGACAGTGGCGCGATATATAGTC
GACGAAATGATAAAGTTGCCAGGAATGGTTTGGGCACAAGAATGGCGGGA
ACTCGTCCGTTACACAACGTTCTACTACGACAGTGCCCCCGCCTTTGATA
TATTGCTGGATTGTGGGCCACCAGCCGATCTACCAGAAGGTAGAAAAAAT
TGGTTAAATGACTTGTTGTCTGAGGCCAGGAGCTACCCTAAACACATGGA
GATCCTTTTACAACGTGGCTATCTGGATGAAATGGTAGATATCCGCATAA
TGAAAGAAATATTTGTGGGTGCGTTGGGAGCCGGCAATCTTGCATTTGTT
TGGCGCCTCTTAAAACACTGCGGGGTGGGCCCCCTCGATGCACTGGACGA
TTCGGATCCTGAGTACCATGGACAAAGTGCCTTACACATTGCGGCGCGTT
ACAGCGACTTAAAAACCTTCCGTGAGTTCCTGTCTAAACAGAATTTGACT
CTGAACCCGGATCGTCCCATCTATTGCTCCGCATTGGTCAGCGCAGCTGT
GGGATACAATGTCGATGTCATCGGGTATTTTCTACAAGAAGGTTTCGGAA
TCAACTCCTTATATGCAATGTTCACATCGAAAAAAGACAAAGTGACCGAG
GCTTTGATAATCCACGTCGCCACGGCGCGGATCGGCCCCGACAATCGTAA
CGGAAAGATGGTCCGTGAAAATACCGCAGCAACAGTGAATTTCTTGCTTG
ACCACGGGGCTCAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008970-T1.utr3p1 | KJC3_008970-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_008970-T1.utr5p1 | KJC3_008970-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR001810 |
| DBxref | InterPro:IPR020683 |
| DBxref | InterPro:IPR036770 |
| DBxref | InterPro:IPR002110 |
| DBxref | PFAM:PF13637 |
| DBxref | PFAM:PF12796 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:3664670..3667111 - |
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