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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:4122015..4124393+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009059-T1 ID=KJC3_009059-T1|Name=KJC3_009059-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2379bp|location=Sequence derived from alignment at ch6:4122015..4124393+ (Aspergillus niger KJC3)
CCTGCTAATATCTGAACTACTCAAACAAAACATGTCAATTCCGCCCCGTT
CCCAACTGTTTCGAGATTTCATGCTCCATGAAGCCTCTTGCCCCCGCCCT
GCGTCCCAAGACTGCCGACAACCGTAGGCCATTCAATGCCAATGTCTCTG
AACCACCTATATTCCCCAGACAAAAGGCCTCAACCGCCTGTCGCGAGTGC
AAGCGCATGAGATGTAAGGTAATATCCCTTCTTCTCCCTACCCATGCCTT
CCTGGTAACGTTAAATTCGAGCTAGTGTTCCGTCGGAAACGGAACTACGG
TGTGTGACCGATGCATCAAAAATCAGACCCTGTGTGTCTTCGACCTAGAC
GAGGATATGCGACGGAAGCTATCTCACAAGCGCAAGCTTAACGAACTGGA
AGGAGAGCGTGATTTCCTGCAGCAGCTGGTGAATACGCTGCGCGACAGCT
CCGATGACAAGGCCCTGCAGCTGCTGGGTCTCATTCGCAGTCAAGCAACC
CCCGCCGAATTACAGCTCTACATCGAAAATGCCATGACCGACGGGGATCG
GCAGCAGAGTCCTGTTTGCGCCGACGGGTACGACCGCACGCGGTCGCCGT
CTAATACCATAGACTTCCATCGCCCCTCCCTGCATCGCGCTTCGACTATC
AAGCGACTGCCCAGTCCACCCGTCTATCACGTCCCCGCAGAGCCCTGGAC
GTCGGTCACCAAATCCGATGATTTTGTATCATATCTGGTCTCACTCTGGC
TTACGTGGAGTCAGCCTTTTCATAATTGGATTGATCGCGACCTTTTCCTC
CGCGATGCTCAGACAGGAGATCTCAGTTCTCAGTACTGTTCTCCGTTTCT
GGTGAACTGCATTCTTACAGAAGCATGTGTAAGTGCCCCGGATGATGGAC
TCTTTGCAGTCACTAATCACCAATTTCCTAACATAGTTCTATTCGGATCT
CCCCGAAGCCTACGCGGACCCTACCGATTGCAATTCAAAAGGTCTTCATT
TTTTCGAGGAGGCGAAACGATGGTACGATAGAGTGGACGGTCAGCATGAC
TTGCCTACTTTGCAAGGCTGCGGAGTATTCACCATTTGGTAGGTTTTCCA
TCCACCAGCGGCAGCATCTATTGGATTAGTACACTGATTGACTATTTGCA
GCAAAGCTGCACTGGGAAAAGGCCAAGCTGCATGGTGGCATTTAGGTCAG
CTTCGCAGTTTGGCCGCGGATCTCACAGAAACGTACCCGCTACTAGCAAC
TTTGACACCAGAGGGCCGTGCTGCCAATAATGCTATCTGGGGCGTTTATA
ATCTCTCAGTGTGCGTCTCAATATACTTCTGTGGGCTATCTTTTACCTAT
CCTAAGTCAAAGCGTGCAGAACTTCCTCGATCACATGGATGAAGTATCTC
GCAACTACTCAGCCAGATCGACCTCGTCTCCCATGCGATCACGGCCCTGA
TGAGACCTGGGTTCCGTATCCACGCCAAGCCAGTCCCGTTCAGTCACATA
TCGCTTGTGTGTTCAACAACCTCTGCGAGCTGAGCACCATCAATACAGAT
GCAAATGCACTAGTCTTTGGCAGTGGCCAGATACCGCCCCCGGATATTCT
TGCGCGCACTTTGCAGAAAATACGGGCAAGATTAGATCGATGGAGAGACA
ATTTGCCGGAGTGTCTTACTCCGGAAAATGTTACGGTACCGCATGCTCTT
ACTTTACAGTAAGTGGACCCTCTTTTGCCCTCAGAACAGTGCCAAGATGT
CTTAATCATGCAACACGCAGCATGGTTTACCACGCAAGTATCATGATTCT
TTGGGGATCCCTCAAGGAGCCGAATGATGCTGCTAAGGTCGGCACCGAAG
GCATGACGTTTGCAGCGAGAGAAGTCTGCCTGGACGCGGCGGAATCCGTT
GTTCAGCTCCTCCGCATTTATCGCGCGAAGTGGGGGATTGACTACATGTG
TCTTACCACCGTAAGTTGCCTGAGCACGGCGCTTTTCACTTTGCTAAGCG
AGCTCGGTGACCTGGGGCGTAAGAGCGCCTTCGCAGAGCTCTGCGTAGTC
GCCCGTGCCTGTTCCCGCAGGTGGCCCCTAATGAAAGGCCTCATGCGCAT
GTTGCAGCTTTCAGCGCGGAAAAACCATGTGAGTCTTCTCCCAGAGACCC
ACGCGCTGTTTGTTGACTTCGAAGCAACCATATGGGAGAGACATGATGAC
GAGCGCTTTAAGAGTATTTATCCCAACGTTTGCATCTAGTGAAGCGTGGA
TGGGAACACTCTTTGTTTTCTTTTCTTTTTCTGAGAGGGGTGGGACTCAT
CGAACTAGCGAGGCACCGGAGAGGGGGGGGGGGGGTGGGTAAACTCTGTA
GATGGTGACTTCAAAACCTTTGTTTTACC back to topCoding sequence (CDS) from alignment at ch6:4122015..4124393+ >KJC3_009059-T1 ID=KJC3_009059-T1|Name=KJC3_009059-T1|organism=Aspergillus niger KJC3|type=CDS|length=6990bp|location=Sequence derived from alignment at ch6:4122015..4124393+ (Aspergillus niger KJC3)
ATGAAGCCTCTTGCCCCCGCCCTGCGTCCCAAGACTGCCGACAACCGTAG
GCCATTCAATGCCAATGTCTCTGAACCACCTATATTCCCCAGACAAAAGG
CCTCAACCGCCTGTCGCGAGTGCAAGCGCATGAGATGTAAGTGTTCCGTC
GGAAACGGAACTACGGTGTGTGACCGATGCATCAAAAATCAGACCCTGTG
TGTCTTCGACCTAGACGAGGATATGCGACGGAAGCTATCTCACAAGCGCA
AGCTTAACGAACTGGAAGGAGAGCGTGATTTCCTGCAGCAGCTGGTGAAT
ACGCTGCGCGACAGCTCCGATGACAAGGCCCTGCAGCTGCTGGGTCTCAT
TCGCAGTCAAGCAACCCCCGCCGAATTACAGCTCTACATCGAAAATGCCA
TGACCGACGGGGATCGGCAGCAGAGTCCTGTTTGCGCCGACGGGTACGAC
CGCACGCGGTCGCCGTCTAATACCATAGACTTCCATCGCCCCTCCCTGCA
TCGCGCTTCGACTATCAAGCGACTGCCCAGTCCACCCGTCTATCACGTCC
CCGCAGAGCCCTGGACGTCGGTCACCAAATCCGATGATTTTGTATCATAT
CTGGTCTCACTCTGGCTTACGTGGAGTCAGCCTTTTCATAATTGGATTGA
TCGCGACCTTTTCCTCCGCGATGCTCAGACAGGAGATCTCAGTTCTCAGT
ACTGTTCTCCGTTTCTGGTGAACTGCATTCTTACAGAAGCATGTTTCTAT
TCGGATCTCCCCGAAGCCTACGCGGACCCTACCGATTGCAATTCAAAAGG
TCTTCATTTTTTCGAGGAGGCGAAACGATGGTACGATAGAGTGGACGGTC
AGCATGACTTGCCTACTTTGCAAGGCTGCGGAGTATTCACCATTTGCAAA
GCTGCACTGGGAAAAGGCCAAGCTGCATGGTGGCATTTAGGTCAGCTTCG
CAGTTTGGCCGCGGATCTCACAGAAACGTACCCGCTACTAGCAACTTTGA
CACCAGAGGGCCGTGCTGCCAATAATGCTATCTGGGGCGTTTATAATCTC
TCAGTAACTTCCTCGATCACATGGATGAAGTATCTCGCAACTACTCAGCC
AGATCGACCTCGTCTCCCATGCGATCACGGCCCTGATGAGACCTGGGTTC
CGTATCCACGCCAAGCCAGTCCCGTTCAGTCACATATCGCTTGTGTGTTC
AACAACCTCTGCGAGCTGAGCACCATCAATACAGATGCAAATGCACTAGT
CTTTGGCAGTGGCCAGATACCGCCCCCGGATATTCTTGCGCGCACTTTGC
AGAAAATACGGGCAAGATTAGATCGATGGAGAGACAATTTGCCGGAGTGT
CTTACTCCGGAAAATGTTACGGTACCGCATGCTCTTACTTTACAGTAAAT
GAAGCCTCTTGCCCCCGCCCTGCGTCCCAAGACTGCCGACAACCGTAGGC
CATTCAATGCCAATGTCTCTGAACCACCTATATTCCCCAGACAAAAGGCC
TCAACCGCCTGTCGCGAGTGCAAGCGCATGAGATGTAAGTGTTCCGTCGG
AAACGGAACTACGGTGTGTGACCGATGCATCAAAAATCAGACCCTGTGTG
TCTTCGACCTAGACGAGGATATGCGACGGAAGCTATCTCACAAGCGCAAG
CTTAACGAACTGGAAGGAGAGCGTGATTTCCTGCAGCAGCTGGTGAATAC
GCTGCGCGACAGCTCCGATGACAAGGCCCTGCAGCTGCTGGGTCTCATTC
GCAGTCAAGCAACCCCCGCCGAATTACAGCTCTACATCGAAAATGCCATG
ACCGACGGGGATCGGCAGCAGAGTCCTGTTTGCGCCGACGGGTACGACCG
CACGCGGTCGCCGTCTAATACCATAGACTTCCATCGCCCCTCCCTGCATC
GCGCTTCGACTATCAAGCGACTGCCCAGTCCACCCGTCTATCACGTCCCC
GCAGAGCCCTGGACGTCGGTCACCAAATCCGATGATTTTGTATCATATCT
GGTCTCACTCTGGCTTACGTGGAGTCAGCCTTTTCATAATTGGATTGATC
GCGACCTTTTCCTCCGCGATGCTCAGACAGGAGATCTCAGTTCTCAGTAC
TGTTCTCCGTTTCTGGTGAACTGCATTCTTACAGAAGCATGTTTCTATTC
GGATCTCCCCGAAGCCTACGCGGACCCTACCGATTGCAATTCAAAAGGTC
TTCATTTTTTCGAGGAGGCGAAACGATGGTACGATAGAGTGGACGGTCAG
CATGACTTGCCTACTTTGCAAGGCTGCGGAGTATTCACCATTTGCAAAGC
TGCACTGGGAAAAGGCCAAGCTGCATGGTGGCATTTAGGTCAGCTTCGCA
GTTTGGCCGCGGATCTCACAGAAACGTACCCGCTACTAGCAACTTTGACA
CCAGAGGGCCGTGCTGCCAATAATGCTATCTGGGGCGTTTATAATCTCTC
AGTAACTTCCTCGATCACATGGATGAAGTATCTCGCAACTACTCAGCCAG
ATCGACCTCGTCTCCCATGCGATCACGGCCCTGATGAGACCTGGGTTCCG
TATCCACGCCAAGCCAGTCCCGTTCAGTCACATATCGCTTGTGTGTTCAA
CAACCTCTGCGAGCTGAGCACCATCAATACAGATGCAAATGCACTAGTCT
TTGGCAGTGGCCAGATACCGCCCCCGGATATTCTTGCGCGCACTTTGCAG
AAAATACGGGCAAGATTAGATCGATGGAGAGACAATTTGCCGGAGTGTCT
TACTCCGGAAAATGTTACGGTACCGCATGCTCTTACTTTACAGTAAATGA
AGCCTCTTGCCCCCGCCCTGCGTCCCAAGACTGCCGACAACCGTAGGCCA
TTCAATGCCAATGTCTCTGAACCACCTATATTCCCCAGACAAAAGGCCTC
AACCGCCTGTCGCGAGTGCAAGCGCATGAGATGTAAGTGTTCCGTCGGAA
ACGGAACTACGGTGTGTGACCGATGCATCAAAAATCAGACCCTGTGTGTC
TTCGACCTAGACGAGGATATGCGACGGAAGCTATCTCACAAGCGCAAGCT
TAACGAACTGGAAGGAGAGCGTGATTTCCTGCAGCAGCTGGTGAATACGC
TGCGCGACAGCTCCGATGACAAGGCCCTGCAGCTGCTGGGTCTCATTCGC
AGTCAAGCAACCCCCGCCGAATTACAGCTCTACATCGAAAATGCCATGAC
CGACGGGGATCGGCAGCAGAGTCCTGTTTGCGCCGACGGGTACGACCGCA
CGCGGTCGCCGTCTAATACCATAGACTTCCATCGCCCCTCCCTGCATCGC
GCTTCGACTATCAAGCGACTGCCCAGTCCACCCGTCTATCACGTCCCCGC
AGAGCCCTGGACGTCGGTCACCAAATCCGATGATTTTGTATCATATCTGG
TCTCACTCTGGCTTACGTGGAGTCAGCCTTTTCATAATTGGATTGATCGC
GACCTTTTCCTCCGCGATGCTCAGACAGGAGATCTCAGTTCTCAGTACTG
TTCTCCGTTTCTGGTGAACTGCATTCTTACAGAAGCATGTTTCTATTCGG
ATCTCCCCGAAGCCTACGCGGACCCTACCGATTGCAATTCAAAAGGTCTT
CATTTTTTCGAGGAGGCGAAACGATGGTACGATAGAGTGGACGGTCAGCA
TGACTTGCCTACTTTGCAAGGCTGCGGAGTATTCACCATTTGCAAAGCTG
CACTGGGAAAAGGCCAAGCTGCATGGTGGCATTTAGGTCAGCTTCGCAGT
TTGGCCGCGGATCTCACAGAAACGTACCCGCTACTAGCAACTTTGACACC
AGAGGGCCGTGCTGCCAATAATGCTATCTGGGGCGTTTATAATCTCTCAG
TAACTTCCTCGATCACATGGATGAAGTATCTCGCAACTACTCAGCCAGAT
CGACCTCGTCTCCCATGCGATCACGGCCCTGATGAGACCTGGGTTCCGTA
TCCACGCCAAGCCAGTCCCGTTCAGTCACATATCGCTTGTGTGTTCAACA
ACCTCTGCGAGCTGAGCACCATCAATACAGATGCAAATGCACTAGTCTTT
GGCAGTGGCCAGATACCGCCCCCGGATATTCTTGCGCGCACTTTGCAGAA
AATACGGGCAAGATTAGATCGATGGAGAGACAATTTGCCGGAGTGTCTTA
CTCCGGAAAATGTTACGGTACCGCATGCTCTTACTTTACAGTAAATGAAG
CCTCTTGCCCCCGCCCTGCGTCCCAAGACTGCCGACAACCGTAGGCCATT
CAATGCCAATGTCTCTGAACCACCTATATTCCCCAGACAAAAGGCCTCAA
CCGCCTGTCGCGAGTGCAAGCGCATGAGATGTAAGTGTTCCGTCGGAAAC
GGAACTACGGTGTGTGACCGATGCATCAAAAATCAGACCCTGTGTGTCTT
CGACCTAGACGAGGATATGCGACGGAAGCTATCTCACAAGCGCAAGCTTA
ACGAACTGGAAGGAGAGCGTGATTTCCTGCAGCAGCTGGTGAATACGCTG
CGCGACAGCTCCGATGACAAGGCCCTGCAGCTGCTGGGTCTCATTCGCAG
TCAAGCAACCCCCGCCGAATTACAGCTCTACATCGAAAATGCCATGACCG
ACGGGGATCGGCAGCAGAGTCCTGTTTGCGCCGACGGGTACGACCGCACG
CGGTCGCCGTCTAATACCATAGACTTCCATCGCCCCTCCCTGCATCGCGC
TTCGACTATCAAGCGACTGCCCAGTCCACCCGTCTATCACGTCCCCGCAG
AGCCCTGGACGTCGGTCACCAAATCCGATGATTTTGTATCATATCTGGTC
TCACTCTGGCTTACGTGGAGTCAGCCTTTTCATAATTGGATTGATCGCGA
CCTTTTCCTCCGCGATGCTCAGACAGGAGATCTCAGTTCTCAGTACTGTT
CTCCGTTTCTGGTGAACTGCATTCTTACAGAAGCATGTTTCTATTCGGAT
CTCCCCGAAGCCTACGCGGACCCTACCGATTGCAATTCAAAAGGTCTTCA
TTTTTTCGAGGAGGCGAAACGATGGTACGATAGAGTGGACGGTCAGCATG
ACTTGCCTACTTTGCAAGGCTGCGGAGTATTCACCATTTGCAAAGCTGCA
CTGGGAAAAGGCCAAGCTGCATGGTGGCATTTAGGTCAGCTTCGCAGTTT
GGCCGCGGATCTCACAGAAACGTACCCGCTACTAGCAACTTTGACACCAG
AGGGCCGTGCTGCCAATAATGCTATCTGGGGCGTTTATAATCTCTCAGTA
ACTTCCTCGATCACATGGATGAAGTATCTCGCAACTACTCAGCCAGATCG
ACCTCGTCTCCCATGCGATCACGGCCCTGATGAGACCTGGGTTCCGTATC
CACGCCAAGCCAGTCCCGTTCAGTCACATATCGCTTGTGTGTTCAACAAC
CTCTGCGAGCTGAGCACCATCAATACAGATGCAAATGCACTAGTCTTTGG
CAGTGGCCAGATACCGCCCCCGGATATTCTTGCGCGCACTTTGCAGAAAA
TACGGGCAAGATTAGATCGATGGAGAGACAATTTGCCGGAGTGTCTTACT
CCGGAAAATGTTACGGTACCGCATGCTCTTACTTTACAGTAAATGAAGCC
TCTTGCCCCCGCCCTGCGTCCCAAGACTGCCGACAACCGTAGGCCATTCA
ATGCCAATGTCTCTGAACCACCTATATTCCCCAGACAAAAGGCCTCAACC
GCCTGTCGCGAGTGCAAGCGCATGAGATGTAAGTGTTCCGTCGGAAACGG
AACTACGGTGTGTGACCGATGCATCAAAAATCAGACCCTGTGTGTCTTCG
ACCTAGACGAGGATATGCGACGGAAGCTATCTCACAAGCGCAAGCTTAAC
GAACTGGAAGGAGAGCGTGATTTCCTGCAGCAGCTGGTGAATACGCTGCG
CGACAGCTCCGATGACAAGGCCCTGCAGCTGCTGGGTCTCATTCGCAGTC
AAGCAACCCCCGCCGAATTACAGCTCTACATCGAAAATGCCATGACCGAC
GGGGATCGGCAGCAGAGTCCTGTTTGCGCCGACGGGTACGACCGCACGCG
GTCGCCGTCTAATACCATAGACTTCCATCGCCCCTCCCTGCATCGCGCTT
CGACTATCAAGCGACTGCCCAGTCCACCCGTCTATCACGTCCCCGCAGAG
CCCTGGACGTCGGTCACCAAATCCGATGATTTTGTATCATATCTGGTCTC
ACTCTGGCTTACGTGGAGTCAGCCTTTTCATAATTGGATTGATCGCGACC
TTTTCCTCCGCGATGCTCAGACAGGAGATCTCAGTTCTCAGTACTGTTCT
CCGTTTCTGGTGAACTGCATTCTTACAGAAGCATGTTTCTATTCGGATCT
CCCCGAAGCCTACGCGGACCCTACCGATTGCAATTCAAAAGGTCTTCATT
TTTTCGAGGAGGCGAAACGATGGTACGATAGAGTGGACGGTCAGCATGAC
TTGCCTACTTTGCAAGGCTGCGGAGTATTCACCATTTGCAAAGCTGCACT
GGGAAAAGGCCAAGCTGCATGGTGGCATTTAGGTCAGCTTCGCAGTTTGG
CCGCGGATCTCACAGAAACGTACCCGCTACTAGCAACTTTGACACCAGAG
GGCCGTGCTGCCAATAATGCTATCTGGGGCGTTTATAATCTCTCAGTAAC
TTCCTCGATCACATGGATGAAGTATCTCGCAACTACTCAGCCAGATCGAC
CTCGTCTCCCATGCGATCACGGCCCTGATGAGACCTGGGTTCCGTATCCA
CGCCAAGCCAGTCCCGTTCAGTCACATATCGCTTGTGTGTTCAACAACCT
CTGCGAGCTGAGCACCATCAATACAGATGCAAATGCACTAGTCTTTGGCA
GTGGCCAGATACCGCCCCCGGATATTCTTGCGCGCACTTTGCAGAAAATA
CGGGCAAGATTAGATCGATGGAGAGACAATTTGCCGGAGTGTCTTACTCC
GGAAAATGTTACGGTACCGCATGCTCTTACTTTACAGTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
| GO:0042025 | host cell nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006351 | transcription, DNA-templated |
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009059-T1.utr5p1 | KJC3_009059-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009059-T1.utr3p1 | KJC3_009059-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR036864 |
| DBxref | InterPro:IPR007219 |
| DBxref | InterPro:IPR001138 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:4122015..4124393 + |
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