You are here

Home

KJC3_009123-T1, KJC3_009123-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_009123-T1
Unique NameKJC3_009123-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:4616912..4617919+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_009123-T1 ID=KJC3_009123-T1|Name=KJC3_009123-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1008bp|location=Sequence derived from alignment at ch6:4616912..4617919+ (Aspergillus niger KJC3)
CATCAGAATCATGGCCGGACAGCAACTCACCTGGCTTGTTACCGGCTGCT
CCTCTGGCCTAGGGGAGGCCTTGGTGCGGGCCATTCTTGATAAGGTAGGT
GTCTCTATACATAAAGACACCACGTCAAAGTGGGACATATAAGGAGCTAA
ATAATAGTGATAGGGAGACAAAGTCATCGCCACAGCCCGCGGTAGCAAAG
GCGTCAGCGGAACCGACCGTCTCTCCTCCCTCAAAGATGCCGGTGCAGCG
GTCTACGAACTCGACATGGCATCCCCAGAAGAAGAGATCAAGCGACAAGC
TCAAGACATCTGGGACAAGTACGGACCGATAGATGTCCTAGTCAACAACG
CAGGGTACATTGACATATCCACCTTCGAAGAGATGACGTACGTCCCTACA
CTCTCCATCCCACCAACACTCCCAACTAATAGAATCACAGCGACGACTTC
CTCCTCAACTCCCTCCGCATCAACGCCCTCGGCCCCTTCACCCTCACTCG
CGCTCTTCTTCCTCACATGCGCGCCCGCAAAACCGGAACCATCCTTTTCT
CCGGCTCCGTAGGCACCTACTACGGCGTTCCCTGTGGGGGGCCCTACGTA
GGCCCCAAGGGGCTGATTGAGGGTATGGTGCCGGCTTTCGCGATGGAAGT
GGCTCCGTTTAATATCCGGGTGTCGATATTGACCTACGGGCATTTCCGTA
CGCAGGTCATGGCGGCCGGGGTGATTCAGGACCGGAATCCGACTCGGCTG
CCGGAATACGAGAAGTTAAATCAAGAGGTTTATGATGGCTGTTTGGATTG
GAATGGCAATCAACCGGGGGATCCGAGGAAGGGTGCTGAGTTGGTGGTAG
AGGCTGTGAAAGGGGAGGGGGGATGTAAGGGGATGGAGTTGCCGCTGAGG
CTGCCATTGGGGTCGGATACGTTTGGGATTGTGAGGAATAGTTGTGAGGA
GTTATTGAAGGTTTGGGATGAGTGGGATGGGATTACGTCGAAGACGGATA
TTGAGTAG
back to top

Coding sequence (CDS) from alignment at ch6:4616912..4617919+

>KJC3_009123-T1 ID=KJC3_009123-T1|Name=KJC3_009123-T1|organism=Aspergillus niger KJC3|type=CDS|length=2628bp|location=Sequence derived from alignment at ch6:4616912..4617919+ (Aspergillus niger KJC3)
ATGGCCGGACAGCAACTCACCTGGCTTGTTACCGGCTGCTCCTCTGGCCT
AGGGGAGGCCTTGGTGCGGGCCATTCTTGATAAGGGAGACAAAGTCATCG
CCACAGCCCGCGGTAGCAAAGGCGTCAGCGGAACCGACCGTCTCTCCTCC
CTCAAAGATGCCGGTGCAGCGGTCTACGAACTCGACATGGCATCCCCAGA
AGAAGAGATCAAGCGACAAGCTCAAGACATCTGGGACAAGTACGGACCGA
TAGATGTCCTAGTCAACAACGCAGGGTACATTGACATATCCACCTTCGAA
GAGATGACCGACGACTTCCTCCTCAACTCCCTCCGCATCAACGCCCTCGG
CCCCTTCACCCTCACTCGCGCTCTTCTTCCTCACATGCGCGCCCGCAAAA
CCGGAACCATCCTTTTCTCCGGCTCCGTAGGCACCTACTACGGCGTTCCC
TGTGGGGGGCCCTACGTAGGCCCCAAGGGGCTGATTGAGGGTATGGTGCC
GGCTTTCGCGATGGAAGTGGCTCCGTTTAATATCCGGGTGTCGATATTGA
CCTACGGGCATTTCCGTACGCAGGTCATGGCGGCCGGGGTGATTCAGGAC
CGGAATCCGACTCGGCTGCCGGAATACGAGAAGTTAAATCAAGAGGTTTA
TGATGGCTGTTTGGATTGGAATGGCAATCAACCGGGGGATCCGAGGAAGG
GTGCTGAGTTGGTGGTAGAGGCTGTGAAAGGGGAGGGGGGATGTAAGGGG
ATGGAGTTGCCGCTGAGGCTGCCATTGGGGTCGGATACGTTTGGGATTGT
GAGGAATAGTTGTGAGGAGTTATTGAAGGTTTGGGATGAGTGGGATGGGA
TTACGTCGAAGACGGATATTGAGTAGATGGCCGGACAGCAACTCACCTGG
CTTGTTACCGGCTGCTCCTCTGGCCTAGGGGAGGCCTTGGTGCGGGCCAT
TCTTGATAAGGGAGACAAAGTCATCGCCACAGCCCGCGGTAGCAAAGGCG
TCAGCGGAACCGACCGTCTCTCCTCCCTCAAAGATGCCGGTGCAGCGGTC
TACGAACTCGACATGGCATCCCCAGAAGAAGAGATCAAGCGACAAGCTCA
AGACATCTGGGACAAGTACGGACCGATAGATGTCCTAGTCAACAACGCAG
GGTACATTGACATATCCACCTTCGAAGAGATGACCGACGACTTCCTCCTC
AACTCCCTCCGCATCAACGCCCTCGGCCCCTTCACCCTCACTCGCGCTCT
TCTTCCTCACATGCGCGCCCGCAAAACCGGAACCATCCTTTTCTCCGGCT
CCGTAGGCACCTACTACGGCGTTCCCTGTGGGGGGCCCTACGTAGGCCCC
AAGGGGCTGATTGAGGGTATGGTGCCGGCTTTCGCGATGGAAGTGGCTCC
GTTTAATATCCGGGTGTCGATATTGACCTACGGGCATTTCCGTACGCAGG
TCATGGCGGCCGGGGTGATTCAGGACCGGAATCCGACTCGGCTGCCGGAA
TACGAGAAGTTAAATCAAGAGGTTTATGATGGCTGTTTGGATTGGAATGG
CAATCAACCGGGGGATCCGAGGAAGGGTGCTGAGTTGGTGGTAGAGGCTG
TGAAAGGGGAGGGGGGATGTAAGGGGATGGAGTTGCCGCTGAGGCTGCCA
TTGGGGTCGGATACGTTTGGGATTGTGAGGAATAGTTGTGAGGAGTTATT
GAAGGTTTGGGATGAGTGGGATGGGATTACGTCGAAGACGGATATTGAGT
AGATGGCCGGACAGCAACTCACCTGGCTTGTTACCGGCTGCTCCTCTGGC
CTAGGGGAGGCCTTGGTGCGGGCCATTCTTGATAAGGGAGACAAAGTCAT
CGCCACAGCCCGCGGTAGCAAAGGCGTCAGCGGAACCGACCGTCTCTCCT
CCCTCAAAGATGCCGGTGCAGCGGTCTACGAACTCGACATGGCATCCCCA
GAAGAAGAGATCAAGCGACAAGCTCAAGACATCTGGGACAAGTACGGACC
GATAGATGTCCTAGTCAACAACGCAGGGTACATTGACATATCCACCTTCG
AAGAGATGACCGACGACTTCCTCCTCAACTCCCTCCGCATCAACGCCCTC
GGCCCCTTCACCCTCACTCGCGCTCTTCTTCCTCACATGCGCGCCCGCAA
AACCGGAACCATCCTTTTCTCCGGCTCCGTAGGCACCTACTACGGCGTTC
CCTGTGGGGGGCCCTACGTAGGCCCCAAGGGGCTGATTGAGGGTATGGTG
CCGGCTTTCGCGATGGAAGTGGCTCCGTTTAATATCCGGGTGTCGATATT
GACCTACGGGCATTTCCGTACGCAGGTCATGGCGGCCGGGGTGATTCAGG
ACCGGAATCCGACTCGGCTGCCGGAATACGAGAAGTTAAATCAAGAGGTT
TATGATGGCTGTTTGGATTGGAATGGCAATCAACCGGGGGATCCGAGGAA
GGGTGCTGAGTTGGTGGTAGAGGCTGTGAAAGGGGAGGGGGGATGTAAGG
GGATGGAGTTGCCGCTGAGGCTGCCATTGGGGTCGGATACGTTTGGGATT
GTGAGGAATAGTTGTGAGGAGTTATTGAAGGTTTGGGATGAGTGGGATGG
GATTACGTCGAAGACGGATATTGAGTAG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
KJC3_009123KJC3_009123Aspergillus niger KJC3gene


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009123-T1.utr5p1KJC3_009123-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009123-T1.exon1KJC3_009123-T1.exon1Aspergillus niger KJC3exon
KJC3_009123-T1.exon2KJC3_009123-T1.exon2Aspergillus niger KJC3exon
KJC3_009123-T1.exon3KJC3_009123-T1.exon3Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009123-T1.cdsKJC3_009123-T1.cdsAspergillus niger KJC3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009123-T1KJC3_009123-T1-proteinAspergillus niger KJC3polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR036291
DBxrefInterPro:IPR002347
DBxrefPFAM:PF08659
DBxrefPFAM:PF13561
DBxrefPFAM:PF00106
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:4616912..4617919 +
Powered by Drupal