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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:4682947..4685184- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009147-T1 ID=KJC3_009147-T1|Name=KJC3_009147-T1|organism=Aspergillus niger KJC3|type=mRNA|length=2238bp|location=Sequence derived from alignment at ch6:4682947..4685184- (Aspergillus niger KJC3)
CCAGCTTCATTGTTAATGGATTGAGTTGTTGACAGCCCGGAAGGCGGTGA
TGATCCTCCACTTGATCTGCCGGGCAATTAATTGTTCAGGCGCTGCTGTT
GATCCCCTCCACTCTCCCTACGATGCGCTCTGCTTCTAACTGTGACACAA
GGCTGACCCTTTCATGAGTCATTAGAGTACATTCACTCATCAGCCCATTT
GACTCATCCTGGGATGGCTGCTACCCATGCTCAGAACATCCCTCTTCTTC
CTGCCTCTCAAGCGCCGCCTACTCCGCCTGACCGTCCCTCTCTCTCCGCC
AACTGATGGTTCCGCCGCGACTGGATCTCTTTTCATTCGCAGAATTTCCC
CGTTGATACCCCGTGCTTGTATTCATACCCTCAGGTCTACATCTGTACCG
CACAGCTCTTCCATGAGCCGTCGGAGATCCTCCAGCCTCTCCCCTCAGCG
AACGAACAAAAGGCGACGCATACCTGAAGCTGCCCCGCATCAGGGCGCTG
CAGGAGACACCATGGCTCAATCCGCGGACACCCTTCCCATCATTAGACTT
ACCCCTCTCGAATCGACATTAAAATCGCTCTTACTCGATGTCGCGAAATA
CATACATGAAAAGAATGTTGCAGAAGGACGCCGCGATGCGGAGCCCACGG
TTCTGCGATTTACCGGAGGATGGGTGCGGGACAAGCTGTTAGGGGTGGGC
AGTAATGATGTTGACGTCGGTATTAACAATATGACGGGGTATCAGTTTGG
TTTGCTCCTCAAGGAGTATATGGATAGACCAGAAAACTTGGAGAAGTACA
GACAAGAGCAGCCCAATGGAGAGTTGAAGCACGCGATTGCTAGCCTACAT
AAAATCGAGGCGAACCCAGAGAAGTCCAAACACCTGGAGACAGTCACAAC
AAGAATATTCGGCTTGGATATTGATTTGGTGAATCTACGGAAGGAGACTT
ACTCGGAAGATAGCAGAAATCCACAGATGGAATTTGGAACAGCCCAGGAA
GACGCGATGCGTCGCGATGCGACGATCAATGCGCTTTTTTATAACTTAAA
CGAATCTATAGTCGAGGATTTCACTGGACGAGGTCTGGAGGATATGAAGA
AGGAGATTATCCGTACCCCGATGGAACCATATCAAACCTTTCAGGACGAT
CCACTGCGTGTGTTACGCTTGATTCGGTTTGCCAGCCGATTGGGTTACAA
TATTGAAAGTGAGACCCAGGAGGCAATGCGAAATGAACTTATTGGGGAGG
CTCTCAAGCTGAAGATCAGCAGAGAACGGGTGGGTAAGGAGATAGAGAAG
ATGCTTCAAGGTGTGTAGCGTCCAAGTGAGGATTGATTGTTGCTTACAGC
TTCTAGGTCCTGATCCCCGCGGTGCACTGCAATTCATTGATAGTCTTGGG
CTGTACCCGACTATCTTTGCCAATCATCAGGATGATGCGCAAGCAGATAC
CTCATCATGGGCACTTGCATACAATGCGCTGGAGAAAATCCTGAAAGACG
AAACCAACGCAGCTACTGTAAATGTTCGCCAATTCCTCATACGCGACAAA
CTCGAATTATACTACGCATGGATGATTGCAGCATTTGCTCCGTGGTCAAG
TATCCCGTCCCGCGTTGCGAGGGGACCCAAGGCGAAACCTCTCCCGGCAC
GGACCGCAGAAGTAGCCCGAGACAGCCTGCGAGCTGATAACAAAACAATT
GCCGTCATCGGTGATGCGGCACACAACTGGCAGGCCATCACCGATGTCAA
GAACTCTGTCCTCGAGGGACGCATGGATGGCACTGCAGCAGAGGCGCGGC
AGCAGGTCGGACTGCACATTCGCTCGTGGAAGAAGGATTGGAGGCTCTGT
ATACTCCTTTCCATTCTCCAAGAAATTATGCGTGGCGGCGAGTTTACTAG
CGGTAAGGATTTTTCCGTGCCCGTTGTCCTTAAAAGGAACTGATGCTTAC
ATGATGGCAGTGCTGCAATCGTACGACGGGTTCATCTCCTACATCAAAGA
GCAAGATCTACAGGATGCATTTGAGCTGAAGCCCCTCGCCAACGGCGGAG
AGATTGTGAAGGCTCTTGGTTGCAAGACTGGTCCCTGGATGTCGAAAGCT
TTGGATATGTCGATCAAGTGGCAGCTGTTGCACCCGGAGGTTACCGACAA
GGAAAAGGTGCTGGAAGAGCTATCCCGTAGAAAAGAAGAGCTAGGCATCG
CTACATAGTAATAGAAATTAACATGGCTGCTTCTTGGA back to topCoding sequence (CDS) from alignment at ch6:4682947..4685184- >KJC3_009147-T1 ID=KJC3_009147-T1|Name=KJC3_009147-T1|organism=Aspergillus niger KJC3|type=CDS|length=5634bp|location=Sequence derived from alignment at ch6:4682947..4685184- (Aspergillus niger KJC3)
TGCTGCAATCGTACGACGGGTTCATCTCCTACATCAAAGAGCAAGATCTA
CAGGATGCATTTGAGCTGAAGCCCCTCGCCAACGGCGGAGAGATTGTGAA
GGCTCTTGGTTGCAAGACTGGTCCCTGGATGTCGAAAGCTTTGGATATGT
CGATCAAGTGGCAGCTGTTGCACCCGGAGGTTACCGACAAGGAAAAGGTG
CTGGAAGAGCTATCCCGTAGAAAAGAAGAGCTAGGCATCGCTACATAGGT
CCTGATCCCCGCGGTGCACTGCAATTCATTGATAGTCTTGGGCTGTACCC
GACTATCTTTGCCAATCATCAGGATGATGCGCAAGCAGATACCTCATCAT
GGGCACTTGCATACAATGCGCTGGAGAAAATCCTGAAAGACGAAACCAAC
GCAGCTACTGTAAATGTTCGCCAATTCCTCATACGCGACAAACTCGAATT
ATACTACGCATGGATGATTGCAGCATTTGCTCCGTGGTCAAGTATCCCGT
CCCGCGTTGCGAGGGGACCCAAGGCGAAACCTCTCCCGGCACGGACCGCA
GAAGTAGCCCGAGACAGCCTGCGAGCTGATAACAAAACAATTGCCGTCAT
CGGTGATGCGGCACACAACTGGCAGGCCATCACCGATGTCAAGAACTCTG
TCCTCGAGGGACGCATGGATGGCACTGCAGCAGAGGCGCGGCAGCAGGTC
GGACTGCACATTCGCTCGTGGAAGAAGGATTGGAGGCTCTGTATACTCCT
TTCCATTCTCCAAGAAATTATGCGTGGCGGCGAGTTTACTAGCGATGCTC
AGAACATCCCTCTTCTTCCTGCCTCTCAAGCGCCGCCTACTCCGCCTGAC
CGTCCCTCTCTCTCCGCCAACTGATGGTTCCGCCGCGACTGGATCTCTTT
TCATTCGCAGAATTTCCCCGTTGATACCCCGTGCTTGTATTCATACCCTC
AGGTCTACATCTGTACCGCACAGCTCTTCCATGAGCCGTCGGAGATCCTC
CAGCCTCTCCCCTCAGCGAACGAACAAAAGGCGACGCATACCTGAAGCTG
CCCCGCATCAGGGCGCTGCAGGAGACACCATGGCTCAATCCGCGGACACC
CTTCCCATCATTAGACTTACCCCTCTCGAATCGACATTAAAATCGCTCTT
ACTCGATGTCGCGAAATACATACATGAAAAGAATGTTGCAGAAGGACGCC
GCGATGCGGAGCCCACGGTTCTGCGATTTACCGGAGGATGGGTGCGGGAC
AAGCTGTTAGGGGTGGGCAGTAATGATGTTGACGTCGGTATTAACAATAT
GACGGGGTATCAGTTTGGTTTGCTCCTCAAGGAGTATATGGATAGACCAG
AAAACTTGGAGAAGTACAGACAAGAGCAGCCCAATGGAGAGTTGAAGCAC
GCGATTGCTAGCCTACATAAAATCGAGGCGAACCCAGAGAAGTCCAAACA
CCTGGAGACAGTCACAACAAGAATATTCGGCTTGGATATTGATTTGGTGA
ATCTACGGAAGGAGACTTACTCGGAAGATAGCAGAAATCCACAGATGGAA
TTTGGAACAGCCCAGGAAGACGCGATGCGTCGCGATGCGACGATCAATGC
GCTTTTTTATAACTTAAACGAATCTATAGTCGAGGATTTCACTGGACGAG
GTCTGGAGGATATGAAGAAGGAGATTATCCGTACCCCGATGGAACCATAT
CAAACCTTTCAGGACGATCCACTGCGTGTGTTACGCTTGATTCGGTTTGC
CAGCCGATTGGGTTACAATATTGAAAGTGAGACCCAGGAGGCAATGCGAA
ATGAACTTATTGGGGAGGCTCTCAAGCTGAAGATCAGCAGAGAACGGGTG
GGTAAGGAGATAGAGAAGATGCTTCAAGTGCTGCAATCGTACGACGGGTT
CATCTCCTACATCAAAGAGCAAGATCTACAGGATGCATTTGAGCTGAAGC
CCCTCGCCAACGGCGGAGAGATTGTGAAGGCTCTTGGTTGCAAGACTGGT
CCCTGGATGTCGAAAGCTTTGGATATGTCGATCAAGTGGCAGCTGTTGCA
CCCGGAGGTTACCGACAAGGAAAAGGTGCTGGAAGAGCTATCCCGTAGAA
AAGAAGAGCTAGGCATCGCTACATAGGTCCTGATCCCCGCGGTGCACTGC
AATTCATTGATAGTCTTGGGCTGTACCCGACTATCTTTGCCAATCATCAG
GATGATGCGCAAGCAGATACCTCATCATGGGCACTTGCATACAATGCGCT
GGAGAAAATCCTGAAAGACGAAACCAACGCAGCTACTGTAAATGTTCGCC
AATTCCTCATACGCGACAAACTCGAATTATACTACGCATGGATGATTGCA
GCATTTGCTCCGTGGTCAAGTATCCCGTCCCGCGTTGCGAGGGGACCCAA
GGCGAAACCTCTCCCGGCACGGACCGCAGAAGTAGCCCGAGACAGCCTGC
GAGCTGATAACAAAACAATTGCCGTCATCGGTGATGCGGCACACAACTGG
CAGGCCATCACCGATGTCAAGAACTCTGTCCTCGAGGGACGCATGGATGG
CACTGCAGCAGAGGCGCGGCAGCAGGTCGGACTGCACATTCGCTCGTGGA
AGAAGGATTGGAGGCTCTGTATACTCCTTTCCATTCTCCAAGAAATTATG
CGTGGCGGCGAGTTTACTAGCGATGCTCAGAACATCCCTCTTCTTCCTGC
CTCTCAAGCGCCGCCTACTCCGCCTGACCGTCCCTCTCTCTCCGCCAACT
GATGGTTCCGCCGCGACTGGATCTCTTTTCATTCGCAGAATTTCCCCGTT
GATACCCCGTGCTTGTATTCATACCCTCAGGTCTACATCTGTACCGCACA
GCTCTTCCATGAGCCGTCGGAGATCCTCCAGCCTCTCCCCTCAGCGAACG
AACAAAAGGCGACGCATACCTGAAGCTGCCCCGCATCAGGGCGCTGCAGG
AGACACCATGGCTCAATCCGCGGACACCCTTCCCATCATTAGACTTACCC
CTCTCGAATCGACATTAAAATCGCTCTTACTCGATGTCGCGAAATACATA
CATGAAAAGAATGTTGCAGAAGGACGCCGCGATGCGGAGCCCACGGTTCT
GCGATTTACCGGAGGATGGGTGCGGGACAAGCTGTTAGGGGTGGGCAGTA
ATGATGTTGACGTCGGTATTAACAATATGACGGGGTATCAGTTTGGTTTG
CTCCTCAAGGAGTATATGGATAGACCAGAAAACTTGGAGAAGTACAGACA
AGAGCAGCCCAATGGAGAGTTGAAGCACGCGATTGCTAGCCTACATAAAA
TCGAGGCGAACCCAGAGAAGTCCAAACACCTGGAGACAGTCACAACAAGA
ATATTCGGCTTGGATATTGATTTGGTGAATCTACGGAAGGAGACTTACTC
GGAAGATAGCAGAAATCCACAGATGGAATTTGGAACAGCCCAGGAAGACG
CGATGCGTCGCGATGCGACGATCAATGCGCTTTTTTATAACTTAAACGAA
TCTATAGTCGAGGATTTCACTGGACGAGGTCTGGAGGATATGAAGAAGGA
GATTATCCGTACCCCGATGGAACCATATCAAACCTTTCAGGACGATCCAC
TGCGTGTGTTACGCTTGATTCGGTTTGCCAGCCGATTGGGTTACAATATT
GAAAGTGAGACCCAGGAGGCAATGCGAAATGAACTTATTGGGGAGGCTCT
CAAGCTGAAGATCAGCAGAGAACGGGTGGGTAAGGAGATAGAGAAGATGC
TTCAAGTGCTGCAATCGTACGACGGGTTCATCTCCTACATCAAAGAGCAA
GATCTACAGGATGCATTTGAGCTGAAGCCCCTCGCCAACGGCGGAGAGAT
TGTGAAGGCTCTTGGTTGCAAGACTGGTCCCTGGATGTCGAAAGCTTTGG
ATATGTCGATCAAGTGGCAGCTGTTGCACCCGGAGGTTACCGACAAGGAA
AAGGTGCTGGAAGAGCTATCCCGTAGAAAAGAAGAGCTAGGCATCGCTAC
ATAGGTCCTGATCCCCGCGGTGCACTGCAATTCATTGATAGTCTTGGGCT
GTACCCGACTATCTTTGCCAATCATCAGGATGATGCGCAAGCAGATACCT
CATCATGGGCACTTGCATACAATGCGCTGGAGAAAATCCTGAAAGACGAA
ACCAACGCAGCTACTGTAAATGTTCGCCAATTCCTCATACGCGACAAACT
CGAATTATACTACGCATGGATGATTGCAGCATTTGCTCCGTGGTCAAGTA
TCCCGTCCCGCGTTGCGAGGGGACCCAAGGCGAAACCTCTCCCGGCACGG
ACCGCAGAAGTAGCCCGAGACAGCCTGCGAGCTGATAACAAAACAATTGC
CGTCATCGGTGATGCGGCACACAACTGGCAGGCCATCACCGATGTCAAGA
ACTCTGTCCTCGAGGGACGCATGGATGGCACTGCAGCAGAGGCGCGGCAG
CAGGTCGGACTGCACATTCGCTCGTGGAAGAAGGATTGGAGGCTCTGTAT
ACTCCTTTCCATTCTCCAAGAAATTATGCGTGGCGGCGAGTTTACTAGCG
ATGCTCAGAACATCCCTCTTCTTCCTGCCTCTCAAGCGCCGCCTACTCCG
CCTGACCGTCCCTCTCTCTCCGCCAACTGATGGTTCCGCCGCGACTGGAT
CTCTTTTCATTCGCAGAATTTCCCCGTTGATACCCCGTGCTTGTATTCAT
ACCCTCAGGTCTACATCTGTACCGCACAGCTCTTCCATGAGCCGTCGGAG
ATCCTCCAGCCTCTCCCCTCAGCGAACGAACAAAAGGCGACGCATACCTG
AAGCTGCCCCGCATCAGGGCGCTGCAGGAGACACCATGGCTCAATCCGCG
GACACCCTTCCCATCATTAGACTTACCCCTCTCGAATCGACATTAAAATC
GCTCTTACTCGATGTCGCGAAATACATACATGAAAAGAATGTTGCAGAAG
GACGCCGCGATGCGGAGCCCACGGTTCTGCGATTTACCGGAGGATGGGTG
CGGGACAAGCTGTTAGGGGTGGGCAGTAATGATGTTGACGTCGGTATTAA
CAATATGACGGGGTATCAGTTTGGTTTGCTCCTCAAGGAGTATATGGATA
GACCAGAAAACTTGGAGAAGTACAGACAAGAGCAGCCCAATGGAGAGTTG
AAGCACGCGATTGCTAGCCTACATAAAATCGAGGCGAACCCAGAGAAGTC
CAAACACCTGGAGACAGTCACAACAAGAATATTCGGCTTGGATATTGATT
TGGTGAATCTACGGAAGGAGACTTACTCGGAAGATAGCAGAAATCCACAG
ATGGAATTTGGAACAGCCCAGGAAGACGCGATGCGTCGCGATGCGACGAT
CAATGCGCTTTTTTATAACTTAAACGAATCTATAGTCGAGGATTTCACTG
GACGAGGTCTGGAGGATATGAAGAAGGAGATTATCCGTACCCCGATGGAA
CCATATCAAACCTTTCAGGACGATCCACTGCGTGTGTTACGCTTGATTCG
GTTTGCCAGCCGATTGGGTTACAATATTGAAAGTGAGACCCAGGAGGCAA
TGCGAAATGAACTTATTGGGGAGGCTCTCAAGCTGAAGATCAGCAGAGAA
CGGGTGGGTAAGGAGATAGAGAAGATGCTTCAAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
| GO:0016779 | nucleotidyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006396 | RNA processing |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009147-T1.utr3p1 | KJC3_009147-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR032828 |
| DBxref | InterPro:IPR043519 |
| DBxref | InterPro:IPR002646 |
| DBxref | PFAM:PF12627 |
| DBxref | PFAM:PF01743 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:4682947..4685184 - |
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