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KJC3_009150-T1, KJC3_009150-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_009150-T1
Unique NameKJC3_009150-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:4688880..4691915-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_009150-T1 ID=KJC3_009150-T1|Name=KJC3_009150-T1|organism=Aspergillus niger KJC3|type=mRNA|length=3036bp|location=Sequence derived from alignment at ch6:4688880..4691915- (Aspergillus niger KJC3)
CGTGCGTCGCTCATTGAGGACATTCTCAGCAAGGTACCTCTTGTAATCAG
CAACAGCCATGATGACAGCAGCCTCTTGATCGTGTGCGAAAAACGGCGTT
GTTCAAAGCAACATGCGATGCGGAGTAGAATATGGACGACGCGTTCTGGA
AGCACTTTACGCGTATCAGTCAGCGGGTCTTGGCACCGCAGCCATTCTCC
GATCCATCACAATAACCAATTATGGTGATCGCCAACTGCCATTTAGTGTC
CATTACAGCCTTAGAAACTCCTCTCACTCCGCCTTTGTTCCCTAGACCTG
TCCGTATATCCGATGATACCTCGATAGTCGCCGCAGCTTTCACACACCCA
CCCCTATGGACCAGACCTTCGACCTCCCCGACTCGACCGATTGGCTTACA
ACGCCACTGTCACTCGTCGCGCCTCTCGAATCCGCCCTCCGTTGCCAGGT
CTGTAAGGACTTCTTCGATAACCCGGTGATTACTTCGTGCAGCCATACAT
TCTGCTCACTTTGCATTCGGCGGTGTCTAAGCACAGAAGGCAAATGCCCC
GCGTGCCGCAGCTCGGATCAGGAATTGAAGTTGCGGCGCAACTGGGCTGT
TCAGGAACTGGTTGAGGCGTTCCAGAATGCTAGACCCAATGTTTTAGATC
TGGCGAGGAAGGCTGCTGCGCGGGGGAGTGATACTGAGGAGGGAGAGTCG
GAGGAACCCGCACCGAAGAAGCGAAAGGTCGAGGCTGTAGATGGGCCTGC
TGCGGAGGGCGTCAGGACTCGATCGCAAACTCGGGGAATTGGCTCTCAGG
AAGATCCTGTTGCGATTGAGGTGATTGAGGATAGTAATGATGATGAATAT
GTTCCAGGTGTGTATGCTCATCGGCAAAGTTGCGCCGCATGCTAATCGCC
ACTGAAGACGACGGACTGGTCGCGTGCCCAATCTGCAACCGGAGGATGAA
GAATGAAGCGGTGTTTCGACACTTGGATACATGCACTGGAGAGCCCGCGC
CGCCCAAACAAATGAATTTTGGGTAAGATATGTCTTTTGGAGCGTGTCTA
CATGTGTGCTTCTAACTCGGAATTATAGATCGTTACAACCCATGCCACAA
CCGTCGCAGAGAGCAAAAGACGCCCTGAATAAAACACCAGAACGACTGCC
CATTATAAACTATTCTCTATTGAAAGATAATGTGCTCCGAAAGAAGTTAA
AAGATTTGGGTATACCGAACACGGGCCCGAGGCCCCTTCTGCAACGACGT
CACACAGAGTGGATGAATTTGTGGAATGCCAACTGCGACTCCAAAACGCC
AAAGTCCAAAAGGGAATTGCTGAGAGAACTGGATATCTGGGAACGCACGC
AAGGCGGCCAAGCGCAACTATCAGGGGACGTCACAGATACTGTCATGCGC
AAAGACTTTGATGCGGCGGCGTGGTCAACGAGTCATGACGATGACTTCAA
GCGGCTCATTGCCAATGCGCGAAAAAAGAGCGAAGCGCAGGTGCGCACCA
CGATACCACAAGAACCTGTAGGCACAAATCAGGCAACCGACCAGCTTGCC
AGTCCGACAACGTATCAGCCTTCGAGTGTGCCTGTTGTTGAGCATACCGA
AGCCATGCATGCGACGGAAGATGCCCACCCTCCGGAGAAGTTGACTGTAG
ATGACAAAACCGTTATTGTCCCTGAGGTCCAAGCGCAGACACTACAGGGC
TCAGTTGATAGCCAGATGACCAATGCGCAAAATTAATTGCACTTGGTGTA
TGTGCCTAGAATATGCGGATTGCGCAGGTTCCCAGGCCATGGAGGATTGT
TCATCGTCTTGCGCTAAGCAGTGGTATTGGGACCCTCCTCGACCGACATC
CGAGACAGGCGGTCCTCCAATTCCGATTCCACGGCTCGCTCTGCTGCTGC
TCTGCGAGCGGCTTCCTGAGCGCCCTGCTGGAGACTGTCAAGTTCGGCAA
GCTTCTTGCGAGTCTCTTCTGCCTCCTTCTCTTCCATTTCCTCCCGCTCC
TTGTTCTCCAATTCCTGCAGCTCGTCGTCGATCTCAGTCTCATCAATCTG
TGGACCAGCCTCGTTCATGATGTTTCCGACCTCGTCCACCTTGGACATCT
CATCACGCAGCTCTTGCACCACATCTTCGACCCTCTCCGCACCGCCGATC
TGAGTATGCAAGCCTCGAAGGGCTCCTGTGCTTGCCTCCATGACCTTCAC
GAATTGCACTTGATCCGTAGCCTGCTCGATTTTGGAATATACCTCCTCAA
GCTGCATCAGAGTATCCAGTCTCTGTTTCAGATTATGCTCCGCAAGCTTC
TTAGAGCGCACAGCCGAGAGCGCCGAAACGCGGTTCTTGTTTTGCAGCGC
CATTTTGGCAGTTGAATTCAGTTCAGTGATTTTGTTCTCCAGATTCTCCA
CCTGCTTGGTCATAGTCGCCATGAGCGTTTTGATAGAGGCGACGGCGGTA
TCTTGCTCTGTGATATCTTTTGGAGCGTCACTGGTTCTGAATTTGATAGT
CTGCAGCATAGTTAGCGCCTTGCATGGGATAGATAAAAAGCGCAAATATA
TGAATGAGATAATACATGCCTTCCCATCATACGCAATAGCACCGCTATCA
CGCGACATATACAGTAAAAGCACATCCATATCCGCGTCCGACAGGAGACT
CCTTTCATCCAGAACACCAGCGAATTCACTCACGAAGCTCTCCTTCGAGT
AGACCAAGTCAGTCTTCGACGGACTATTCCCCGTAGCGTGCTTAACTACG
CGGTCTGCAGCCTCCTATAAACATACCTCATTAGCCTTACCCACACCAAC
CATCAATGGAAATCCAAACCAATCTACCTACCTTCAGATTCTCTACCAAA
ACCAACTCCTGAGGCTGTAATCTCGGCGTCGCCTCCTCAGATCCAATCAC
AGCCCCTTTCAACTGCTTCATCCCCCAGCTCATCACAGCCCATGGGCTCA
ACACAGATGTATCAATCCCCCACTGCGGCTTACGCAAGCTCGCCGGGTTA
GTTCGATAAAGGTGCAGCGGCACCATGGTTCGATTC
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Coding sequence (CDS) from alignment at ch6:4688880..4691915-

>KJC3_009150-T1 ID=KJC3_009150-T1|Name=KJC3_009150-T1|organism=Aspergillus niger KJC3|type=CDS|length=3825bp|location=Sequence derived from alignment at ch6:4688880..4691915- (Aspergillus niger KJC3)
ATCGTTACAACCCATGCCACAACCGTCGCAGAGAGCAAAAGACGCCCTGA
ATAAAACACCAGAACGACTGCCCATTATAAACTATTCTCTATTGAAAGAT
AATGTGCTCCGAAAGAAGTTAAAAGATTTGGGTATACCGAACACGGGCCC
GAGGCCCCTTCTGCAACGACGTCACACAGAGTGGATGAATTTGTGGAATG
CCAACTGCGACTCCAAAACGCCAAAGTCCAAAAGGGAATTGCTGAGAGAA
CTGGATATCTGGGAACGCACGCAAGGCGGCCAAGCGCAACTATCAGGGGA
CGTCACAGATACTGTCATGCGCAAAGACTTTGATGCGGCGGCGTGGTCAA
CGAGTCATGACGATGACTTCAAGCGGCTCATTGCCAATGCGCGAAAAAAG
AGCGAAGCGCAGGTGCGCACCACGATACCACAAGAACCTGTAGGCACAAA
TCAGGCAACCGACCAGCTTGCCAGTCCGACAACGTATCAGCCTTCGAGTG
TGCCTGTTGTTGAGCATACCGAAGCCATGCATGCGACGGAAGATGCCCAC
CCTCCGGAGAAGTTGACTGTAGATGACAAAACCGTTATTGTCCCTGAGGT
CCAAGCGCAGACACTACAGGGCTCAGTTGATAGCCAGATGACCAATGCGC
AAAATTAAACGACGGACTGGTCGCGTGCCCAATCTGCAACCGGAGGATGA
AGAATGAAGCGGTGTTTCGACACTTGGATACATGCACTGGAGAGCCCGCG
CCGCCCAAACAAATGAATTTTGGATGGACCAGACCTTCGACCTCCCCGAC
TCGACCGATTGGCTTACAACGCCACTGTCACTCGTCGCGCCTCTCGAATC
CGCCCTCCGTTGCCAGGTCTGTAAGGACTTCTTCGATAACCCGGTGATTA
CTTCGTGCAGCCATACATTCTGCTCACTTTGCATTCGGCGGTGTCTAAGC
ACAGAAGGCAAATGCCCCGCGTGCCGCAGCTCGGATCAGGAATTGAAGTT
GCGGCGCAACTGGGCTGTTCAGGAACTGGTTGAGGCGTTCCAGAATGCTA
GACCCAATGTTTTAGATCTGGCGAGGAAGGCTGCTGCGCGGGGGAGTGAT
ACTGAGGAGGGAGAGTCGGAGGAACCCGCACCGAAGAAGCGAAAGGTCGA
GGCTGTAGATGGGCCTGCTGCGGAGGGCGTCAGGACTCGATCGCAAACTC
GGGGAATTGGCTCTCAGGAAGATCCTGTTGCGATTGAGGTGATTGAGGAT
AGTAATGATGATGAATATGTTCCAGATCGTTACAACCCATGCCACAACCG
TCGCAGAGAGCAAAAGACGCCCTGAATAAAACACCAGAACGACTGCCCAT
TATAAACTATTCTCTATTGAAAGATAATGTGCTCCGAAAGAAGTTAAAAG
ATTTGGGTATACCGAACACGGGCCCGAGGCCCCTTCTGCAACGACGTCAC
ACAGAGTGGATGAATTTGTGGAATGCCAACTGCGACTCCAAAACGCCAAA
GTCCAAAAGGGAATTGCTGAGAGAACTGGATATCTGGGAACGCACGCAAG
GCGGCCAAGCGCAACTATCAGGGGACGTCACAGATACTGTCATGCGCAAA
GACTTTGATGCGGCGGCGTGGTCAACGAGTCATGACGATGACTTCAAGCG
GCTCATTGCCAATGCGCGAAAAAAGAGCGAAGCGCAGGTGCGCACCACGA
TACCACAAGAACCTGTAGGCACAAATCAGGCAACCGACCAGCTTGCCAGT
CCGACAACGTATCAGCCTTCGAGTGTGCCTGTTGTTGAGCATACCGAAGC
CATGCATGCGACGGAAGATGCCCACCCTCCGGAGAAGTTGACTGTAGATG
ACAAAACCGTTATTGTCCCTGAGGTCCAAGCGCAGACACTACAGGGCTCA
GTTGATAGCCAGATGACCAATGCGCAAAATTAAACGACGGACTGGTCGCG
TGCCCAATCTGCAACCGGAGGATGAAGAATGAAGCGGTGTTTCGACACTT
GGATACATGCACTGGAGAGCCCGCGCCGCCCAAACAAATGAATTTTGGAT
GGACCAGACCTTCGACCTCCCCGACTCGACCGATTGGCTTACAACGCCAC
TGTCACTCGTCGCGCCTCTCGAATCCGCCCTCCGTTGCCAGGTCTGTAAG
GACTTCTTCGATAACCCGGTGATTACTTCGTGCAGCCATACATTCTGCTC
ACTTTGCATTCGGCGGTGTCTAAGCACAGAAGGCAAATGCCCCGCGTGCC
GCAGCTCGGATCAGGAATTGAAGTTGCGGCGCAACTGGGCTGTTCAGGAA
CTGGTTGAGGCGTTCCAGAATGCTAGACCCAATGTTTTAGATCTGGCGAG
GAAGGCTGCTGCGCGGGGGAGTGATACTGAGGAGGGAGAGTCGGAGGAAC
CCGCACCGAAGAAGCGAAAGGTCGAGGCTGTAGATGGGCCTGCTGCGGAG
GGCGTCAGGACTCGATCGCAAACTCGGGGAATTGGCTCTCAGGAAGATCC
TGTTGCGATTGAGGTGATTGAGGATAGTAATGATGATGAATATGTTCCAG
ATCGTTACAACCCATGCCACAACCGTCGCAGAGAGCAAAAGACGCCCTGA
ATAAAACACCAGAACGACTGCCCATTATAAACTATTCTCTATTGAAAGAT
AATGTGCTCCGAAAGAAGTTAAAAGATTTGGGTATACCGAACACGGGCCC
GAGGCCCCTTCTGCAACGACGTCACACAGAGTGGATGAATTTGTGGAATG
CCAACTGCGACTCCAAAACGCCAAAGTCCAAAAGGGAATTGCTGAGAGAA
CTGGATATCTGGGAACGCACGCAAGGCGGCCAAGCGCAACTATCAGGGGA
CGTCACAGATACTGTCATGCGCAAAGACTTTGATGCGGCGGCGTGGTCAA
CGAGTCATGACGATGACTTCAAGCGGCTCATTGCCAATGCGCGAAAAAAG
AGCGAAGCGCAGGTGCGCACCACGATACCACAAGAACCTGTAGGCACAAA
TCAGGCAACCGACCAGCTTGCCAGTCCGACAACGTATCAGCCTTCGAGTG
TGCCTGTTGTTGAGCATACCGAAGCCATGCATGCGACGGAAGATGCCCAC
CCTCCGGAGAAGTTGACTGTAGATGACAAAACCGTTATTGTCCCTGAGGT
CCAAGCGCAGACACTACAGGGCTCAGTTGATAGCCAGATGACCAATGCGC
AAAATTAAACGACGGACTGGTCGCGTGCCCAATCTGCAACCGGAGGATGA
AGAATGAAGCGGTGTTTCGACACTTGGATACATGCACTGGAGAGCCCGCG
CCGCCCAAACAAATGAATTTTGGATGGACCAGACCTTCGACCTCCCCGAC
TCGACCGATTGGCTTACAACGCCACTGTCACTCGTCGCGCCTCTCGAATC
CGCCCTCCGTTGCCAGGTCTGTAAGGACTTCTTCGATAACCCGGTGATTA
CTTCGTGCAGCCATACATTCTGCTCACTTTGCATTCGGCGGTGTCTAAGC
ACAGAAGGCAAATGCCCCGCGTGCCGCAGCTCGGATCAGGAATTGAAGTT
GCGGCGCAACTGGGCTGTTCAGGAACTGGTTGAGGCGTTCCAGAATGCTA
GACCCAATGTTTTAGATCTGGCGAGGAAGGCTGCTGCGCGGGGGAGTGAT
ACTGAGGAGGGAGAGTCGGAGGAACCCGCACCGAAGAAGCGAAAGGTCGA
GGCTGTAGATGGGCCTGCTGCGGAGGGCGTCAGGACTCGATCGCAAACTC
GGGGAATTGGCTCTCAGGAAGATCCTGTTGCGATTGAGGTGATTGAGGAT
AGTAATGATGATGAATATGTTCCAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006301postreplication repair
GO:0006513protein monoubiquitination
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003697single-stranded DNA binding
GO:0061630ubiquitin protein ligase activity
GO:0003677DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RAD18KJC3_009150Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009150-T1KJC3_009150-T1-proteinAspergillus niger KJC3polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009150-T1.cdsKJC3_009150-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009150-T1.utr3p1KJC3_009150-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009150-T1.exon3KJC3_009150-T1.exon3Aspergillus niger KJC3exon
KJC3_009150-T1.exon2KJC3_009150-T1.exon2Aspergillus niger KJC3exon
KJC3_009150-T1.exon1KJC3_009150-T1.exon1Aspergillus niger KJC3exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009150-T1.utr5p1KJC3_009150-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR017907
DBxrefInterPro:IPR013083
DBxrefInterPro:IPR004580
DBxrefInterPro:IPR001841
DBxrefInterPro:IPR006642
DBxrefInterPro:IPR003034
DBxrefPFAM:PF13445
DBxrefPFAM:PF13920
DBxrefPFAM:PF13923
DBxrefPFAM:PF00097
DBxrefPFAM:PF02037
ProductE3 ubiquitin-protein ligase rad18
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:4688880..4691915 -
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