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KJC3_009188-T1, KJC3_009188-T1 (mRNA) Aspergillus niger KJC3

Overview
NameKJC3_009188-T1
Unique NameKJC3_009188-T1
TypemRNA
OrganismAspergillus niger KJC3
Sequences
The following sequences are available for this feature:

mRNA from alignment at ch6:4800782..4801771+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>KJC3_009188-T1 ID=KJC3_009188-T1|Name=KJC3_009188-T1|organism=Aspergillus niger KJC3|type=mRNA|length=990bp|location=Sequence derived from alignment at ch6:4800782..4801771+ (Aspergillus niger KJC3)
AAAGGCTGCATCGCAATCGCGTCTGGAGATCTTCCTGCGCTTTCCTGCTT
GTTGATAACCTATTCAGTTTATCGCATCTGGTGCAGTGAACTGCAAGCAT
TTTGCAAGATGCGTCAACTCACCGAAGGTAGGTACAACCATCTCCGTCTG
TTGTGATTCTCGCGCATGGATTCTTATTTCGCTTCTGTTTAGAGGAAACC
CGGACTTTGTTCGAAAAGTTGGCCAACTACACTGGAAGGAGTCTTAACAA
CCTGATCGCACCTCCTTCTGGCTCCGAAGATGCCAACGACCGCTATGTTT
TCCGTCTTCACGGCAGCAGAGTATACTACCTGAGACTTTCTCTGGCGAAC
CTCGCAACCAGCATTCCTCGCGCCAATCTCCTCACCCTCGGAACCTGCAT
CGGAAAGTTCACCAAGACCGGAAAGTTCAGAATCCAGCTTACGGCTTTGG
ATGTCCTCGCTCCTCATGCGCGCTACAAGGTGTGGATCAAGCAGAACGGT
GTGATGCCGTTCCTCTATGGCTCCAACGTGGCCAAGGCCCACGTCGGAAG
ATTCAGCGAGGACTGCCCGGAGAATGCCGGTGTAATCGTTATGGATATGA
ATGATACGCCATTGGTAAGAAGACCTCGGCTGGATTGAGATAATCAGAGG
CTGATATACGTTAGGGATTCGGTGTGACTGCCCGGTCGAGTGCTGAAACC
CGGAGACTGGAGCCCACAGCCAACGTGGTGTTCCGTCAGGCAGATATTGG
AGAGTACCTGAGAGAGGTAGGTTGACCAAATGTCACATCCACGGTATCAA
TTTGCTGACATACCCCTAGGAAGATACTCTGTTTACGACCTAAGCCAAAG
CCTTGCATACGCGGGATCGAACATGGGAGATATATACTAGATACCTGGGC
ATTCTCGCAGGAGTTCTGGAGTCGTCTGTCTGTACATTTAGAAAAGTGTT
TCTCAATTCACCTTATCCATCTATTATCTCAAGTGTTTCA
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Coding sequence (CDS) from alignment at ch6:4800782..4801771+

>KJC3_009188-T1 ID=KJC3_009188-T1|Name=KJC3_009188-T1|organism=Aspergillus niger KJC3|type=CDS|length=2268bp|location=Sequence derived from alignment at ch6:4800782..4801771+ (Aspergillus niger KJC3)
ATGCGTCAACTCACCGAAGAGGAAACCCGGACTTTGTTCGAAAAGTTGGC
CAACTACACTGGAAGGAGTCTTAACAACCTGATCGCACCTCCTTCTGGCT
CCGAAGATGCCAACGACCGCTATGTTTTCCGTCTTCACGGCAGCAGAGTA
TACTACCTGAGACTTTCTCTGGCGAACCTCGCAACCAGCATTCCTCGCGC
CAATCTCCTCACCCTCGGAACCTGCATCGGAAAGTTCACCAAGACCGGAA
AGTTCAGAATCCAGCTTACGGCTTTGGATGTCCTCGCTCCTCATGCGCGC
TACAAGGTGTGGATCAAGCAGAACGGTGTGATGCCGTTCCTCTATGGCTC
CAACGTGGCCAAGGCCCACGTCGGAAGATTCAGCGAGGACTGCCCGGAGA
ATGCCGGTGTAATCGTTATGGATATGAATGATACGCCATTGGGATTCGGT
GTGACTGCCCGGTCGAGTGCTGAAACCCGGAGACTGGAGCCCACAGCCAA
CGTGGTGTTCCGTCAGGCAGATATTGGAGAGTACCTGAGAGAGGAAGATA
CTCTGTTTACGACCTAAATGCGTCAACTCACCGAAGAGGAAACCCGGACT
TTGTTCGAAAAGTTGGCCAACTACACTGGAAGGAGTCTTAACAACCTGAT
CGCACCTCCTTCTGGCTCCGAAGATGCCAACGACCGCTATGTTTTCCGTC
TTCACGGCAGCAGAGTATACTACCTGAGACTTTCTCTGGCGAACCTCGCA
ACCAGCATTCCTCGCGCCAATCTCCTCACCCTCGGAACCTGCATCGGAAA
GTTCACCAAGACCGGAAAGTTCAGAATCCAGCTTACGGCTTTGGATGTCC
TCGCTCCTCATGCGCGCTACAAGGTGTGGATCAAGCAGAACGGTGTGATG
CCGTTCCTCTATGGCTCCAACGTGGCCAAGGCCCACGTCGGAAGATTCAG
CGAGGACTGCCCGGAGAATGCCGGTGTAATCGTTATGGATATGAATGATA
CGCCATTGGGATTCGGTGTGACTGCCCGGTCGAGTGCTGAAACCCGGAGA
CTGGAGCCCACAGCCAACGTGGTGTTCCGTCAGGCAGATATTGGAGAGTA
CCTGAGAGAGGAAGATACTCTGTTTACGACCTAAATGCGTCAACTCACCG
AAGAGGAAACCCGGACTTTGTTCGAAAAGTTGGCCAACTACACTGGAAGG
AGTCTTAACAACCTGATCGCACCTCCTTCTGGCTCCGAAGATGCCAACGA
CCGCTATGTTTTCCGTCTTCACGGCAGCAGAGTATACTACCTGAGACTTT
CTCTGGCGAACCTCGCAACCAGCATTCCTCGCGCCAATCTCCTCACCCTC
GGAACCTGCATCGGAAAGTTCACCAAGACCGGAAAGTTCAGAATCCAGCT
TACGGCTTTGGATGTCCTCGCTCCTCATGCGCGCTACAAGGTGTGGATCA
AGCAGAACGGTGTGATGCCGTTCCTCTATGGCTCCAACGTGGCCAAGGCC
CACGTCGGAAGATTCAGCGAGGACTGCCCGGAGAATGCCGGTGTAATCGT
TATGGATATGAATGATACGCCATTGGGATTCGGTGTGACTGCCCGGTCGA
GTGCTGAAACCCGGAGACTGGAGCCCACAGCCAACGTGGTGTTCCGTCAG
GCAGATATTGGAGAGTACCTGAGAGAGGAAGATACTCTGTTTACGACCTA
AATGCGTCAACTCACCGAAGAGGAAACCCGGACTTTGTTCGAAAAGTTGG
CCAACTACACTGGAAGGAGTCTTAACAACCTGATCGCACCTCCTTCTGGC
TCCGAAGATGCCAACGACCGCTATGTTTTCCGTCTTCACGGCAGCAGAGT
ATACTACCTGAGACTTTCTCTGGCGAACCTCGCAACCAGCATTCCTCGCG
CCAATCTCCTCACCCTCGGAACCTGCATCGGAAAGTTCACCAAGACCGGA
AAGTTCAGAATCCAGCTTACGGCTTTGGATGTCCTCGCTCCTCATGCGCG
CTACAAGGTGTGGATCAAGCAGAACGGTGTGATGCCGTTCCTCTATGGCT
CCAACGTGGCCAAGGCCCACGTCGGAAGATTCAGCGAGGACTGCCCGGAG
AATGCCGGTGTAATCGTTATGGATATGAATGATACGCCATTGGGATTCGG
TGTGACTGCCCGGTCGAGTGCTGAAACCCGGAGACTGGAGCCCACAGCCA
ACGTGGTGTTCCGTCAGGCAGATATTGGAGAGTACCTGAGAGAGGAAGAT
ACTCTGTTTACGACCTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0042255ribosome assembly
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NIP7KJC3_009188Aspergillus niger KJC3gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009188-T1KJC3_009188-T1-proteinAspergillus niger KJC3polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009188-T1.utr5p1KJC3_009188-T1.utr5p1Aspergillus niger KJC3five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009188-T1.exon1KJC3_009188-T1.exon1Aspergillus niger KJC3exon
KJC3_009188-T1.exon2KJC3_009188-T1.exon2Aspergillus niger KJC3exon
KJC3_009188-T1.exon3KJC3_009188-T1.exon3Aspergillus niger KJC3exon
KJC3_009188-T1.exon4KJC3_009188-T1.exon4Aspergillus niger KJC3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009188-T1.cdsKJC3_009188-T1.cdsAspergillus niger KJC3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
KJC3_009188-T1.utr3p1KJC3_009188-T1.utr3p1Aspergillus niger KJC3three_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09264PD5
DBxrefInterPro:IPR015947
DBxrefInterPro:IPR040598
DBxrefInterPro:IPR005155
DBxrefInterPro:IPR016686
DBxrefInterPro:IPR036974
DBxrefInterPro:IPR002478
DBxrefPFAM:PF17833
DBxrefPFAM:PF03657
Productribosome biosynthesis protein nip7
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Whole Genome Assembly and Annotation of Aspergillus Aspergillus niger KJC32021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ch6supercontigch6:4800782..4801771 +
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