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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch6:4863960..4865014+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009207-T1 ID=KJC3_009207-T1|Name=KJC3_009207-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1055bp|location=Sequence derived from alignment at ch6:4863960..4865014+ (Aspergillus niger KJC3)
CCGGACATAAGCGACACAATCTTCACTTGTATATATGGCTATCACCCAGG
GGATTTGACGTCAACTTTTGTGGGCTCCTTCATCCTTAATAGCATCAGGA
CCAGATACGTCACATCCCTTTTAGTTACTACTATCAGCCATGTCCTCGTC
CCAAACATCCATTATCCAATCTATCTACGACGAGCGCAGCCCCAACTACG
ACACCTCCCACCACGGCGCCCTAGCAGAAGCATACATCCGCACCGCAGCA
CCCCGCGAAGGCGAATCCGTGCTCGACCTCGCCTGCGGCACAGGACTCGT
ATCCTTTCTTGCTGAGCAAGCCGTCGGCAAACCCGGCCTCGTTGTCGGAG
TCGACATCAGTCCCGGCATGCTGGATGTAGCGCGTCACAAGGCCCAGCAG
ACTGGTTCAAATGTGACGTTCCTTCAACATGATATCTCTCACTTATCGGG
TGTCGGACTAGAGAGTATGCTTCCTCCCGGAGAGGAGGGCTTCGATCTGA
TTACTTGTGCTGCGGCGTTGGTGTTATTGCCTGACCCCGGGAGGGCGGTT
AGGGGCTGGATGCGGTGGTTGAAGCCTGGTGGGAGGATCGTGACGGATGT
GGCGGCGAGAGATGTTCATGTCCCTAGTCGGATCTTTAAGAGAATCAGTG
GTGATTTGGGGATGGGGTTGGTGTGGGATGAGAGTTGGGTACAAGGGGAA
TGGTCTTTGAGGGAGCTTCTAGAGGGGGCTGGGCTGGTGGTGAAGACGGT
TTTCTTGACGGAGTCGTTTCAGGATCGTGTGTATAGTGTTGCTGATGCTG
GAGAGGTGTTTGAAAGGGCTGTTTCTAGTCCGATGTTTCGGAATTTTGGT
GATTCAGGGGTGAGGGATGAGGCGAAGAGGTTGTTTGTCAAGAGGTTTGC
TGAGGAGGCGGGTGCGGAGGGGGTGTTGGTCGATGAGGCGAAGATGTATC
TGGCTGTCGCGTATAAATTGTAGAGAGACTTGTGTTTGTAATTGAGATTG
ATGTGCTTATTGAGGTGATTGTAGTGATGAGTTGTGTTGAGGCCACAAGT
TGGGG back to topCoding sequence (CDS) from alignment at ch6:4863960..4865014+ >KJC3_009207-T1 ID=KJC3_009207-T1|Name=KJC3_009207-T1|organism=Aspergillus niger KJC3|type=CDS|length=834bp|location=Sequence derived from alignment at ch6:4863960..4865014+ (Aspergillus niger KJC3)
ATGTCCTCGTCCCAAACATCCATTATCCAATCTATCTACGACGAGCGCAG
CCCCAACTACGACACCTCCCACCACGGCGCCCTAGCAGAAGCATACATCC
GCACCGCAGCACCCCGCGAAGGCGAATCCGTGCTCGACCTCGCCTGCGGC
ACAGGACTCGTATCCTTTCTTGCTGAGCAAGCCGTCGGCAAACCCGGCCT
CGTTGTCGGAGTCGACATCAGTCCCGGCATGCTGGATGTAGCGCGTCACA
AGGCCCAGCAGACTGGTTCAAATGTGACGTTCCTTCAACATGATATCTCT
CACTTATCGGGTGTCGGACTAGAGAGTATGCTTCCTCCCGGAGAGGAGGG
CTTCGATCTGATTACTTGTGCTGCGGCGTTGGTGTTATTGCCTGACCCCG
GGAGGGCGGTTAGGGGCTGGATGCGGTGGTTGAAGCCTGGTGGGAGGATC
GTGACGGATGTGGCGGCGAGAGATGTTCATGTCCCTAGTCGGATCTTTAA
GAGAATCAGTGGTGATTTGGGGATGGGGTTGGTGTGGGATGAGAGTTGGG
TACAAGGGGAATGGTCTTTGAGGGAGCTTCTAGAGGGGGCTGGGCTGGTG
GTGAAGACGGTTTTCTTGACGGAGTCGTTTCAGGATCGTGTGTATAGTGT
TGCTGATGCTGGAGAGGTGTTTGAAAGGGCTGTTTCTAGTCCGATGTTTC
GGAATTTTGGTGATTCAGGGGTGAGGGATGAGGCGAAGAGGTTGTTTGTC
AAGAGGTTTGCTGAGGAGGCGGGTGCGGAGGGGGTGTTGGTCGATGAGGC
GAAGATGTATCTGGCTGTCGCGTATAAATTGTAG back to top
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009207-T1.utr5p1 | KJC3_009207-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009207-T1.utr3p1 | KJC3_009207-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR029063 |
| DBxref | InterPro:IPR025714 |
| DBxref | PFAM:PF01209 |
| DBxref | PFAM:PF01135 |
| DBxref | PFAM:PF13847 |
| DBxref | PFAM:PF13649 |
| DBxref | PFAM:PF13489 |
| DBxref | PFAM:PF08242 |
| DBxref | PFAM:PF08241 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch6 | supercontig | ch6:4863960..4865014 + |
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