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Sequences
The following sequences are available for this feature:
mRNA from alignment at ch7:291008..292506- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >KJC3_009397-T1 ID=KJC3_009397-T1|Name=KJC3_009397-T1|organism=Aspergillus niger KJC3|type=mRNA|length=1499bp|location=Sequence derived from alignment at ch7:291008..292506- (Aspergillus niger KJC3)
CTACATCCAATTCTTTCATTCATATCAGGTCTGGATAGACAACTAGGAGG
AAAAAATGAATCAAATACAGCAGCAGCAACAGCAACAGCAACACCCTCTG
GTAGGGTCAAACGGGACTACTACTTTGCCCGTCGTCGTTGACACTCGACG
GCCGTCTGGACGTCCCAAACATAATTCATACACCGACTTGATGAAGCCAG
GCGAGAGCTGGGAGGATCTCCCGGATGCCGCAGAGCGGAGGAGAATTCAG
AACCGTCTAGCACAACGGGCATACCGTGAGTACATCCTCTACTCGTGGTT
CGCGAATAGCATCGCTGACGCTGTCTACAAGGCCGAAACATGCGCGACCG
CACCAAAGAGGTCGAGCTCCTCAAAAGTCAAGTCAAAAACCTTCAAGAAG
CCATCAACAGCAACAGCTCCACCCCCAACGACAGCAACAGCGGCAGCATC
AGCGCGAGCGCGAGTACCAGCGACGTGGACGACCGTCCCACGCGAGCCTC
GTCGCAAGTCAGTACTAGCAGTGTCTCTCCTGGACCCCGCGAAGCTCCGA
GCACATATTTCCCATCCCCAGACCAGGAGATGCTAGGCGATGGACTGAGC
TGGCCGACGGACCTGGACCACGACTTCAGCAACTGCTTCGATAAAACAAA
GGACGTTACAGCGGCTGTCACGAGCATGCCGACCTCCGCGTCACCTTCGG
CGATGGCCGCAACAGCGAGCGCCCAGAACGCGATGCGGTGGCTGGAGTCT
GATGTCTACTATCCTTTTCCGCCGTCGCCGCCCAACGTCGACCCCATGCT
GCGCTCCGTGCCGAGCACCATCTCCGACACACATCAACGGATCGCCTCAG
GGTGTTCCTTGTCCAGCCGTGATCCCGAGGCGGACGAACCCTTGATCCAC
ATCGCCATTTCGCGCGGCACAATTGACACTCTTCAATTGTTGCTCATGAC
CTACCCCATCTCAGTGAATGTCCGTGACCGGGCGGGCTACACGCCGCTCC
AACGAGCTGTCATCACTGGAAGGACAGACATGATGAAACTGCTCATTGAA
CATGGTGCCGACGCGGGGCTATGACGTATCTACATGGACGAGTGCATTAA
AATCCGAACGAAAACACAAAACCCGCACCAATTATTGCAGAGGGGCTTGG
TTGGTTACCTCAAGGAGGGGCCGAATTCCTGGGCTGTGACAGGAACCGAC
CGACCCCCAAGTTCCCCACTGATCGGCTATCATTCCATATGTCTATATTT
CTTTTCCTTTCTTTTGTGTTCTTTGTACACATCACTTGTCTTGGTGTCAT
CTTTGGGGTCAATTGGCGAAGGCGTCCTCCGGTTTGATTTCTAGCGGCAG
ATCTGATTGATTAGACTACAAATACCCAACTGCGGCTGGCTTGGTTCCAA
CAATGAAGTTCAATTCTGATTGGCGGTTACTTGTCACTTCCAAGATTAAC
TAGTGAACGTTAGTTAATAATAGTATACGACTAATAGTTTACACCCCCT back to topCoding sequence (CDS) from alignment at ch7:291008..292506- >KJC3_009397-T1 ID=KJC3_009397-T1|Name=KJC3_009397-T1|organism=Aspergillus niger KJC3|type=CDS|length=1926bp|location=Sequence derived from alignment at ch7:291008..292506- (Aspergillus niger KJC3)
GCCGAAACATGCGCGACCGCACCAAAGAGGTCGAGCTCCTCAAAAGTCAA
GTCAAAAACCTTCAAGAAGCCATCAACAGCAACAGCTCCACCCCCAACGA
CAGCAACAGCGGCAGCATCAGCGCGAGCGCGAGTACCAGCGACGTGGACG
ACCGTCCCACGCGAGCCTCGTCGCAAGTCAGTACTAGCAGTGTCTCTCCT
GGACCCCGCGAAGCTCCGAGCACATATTTCCCATCCCCAGACCAGGAGAT
GCTAGGCGATGGACTGAGCTGGCCGACGGACCTGGACCACGACTTCAGCA
ACTGCTTCGATAAAACAAAGGACGTTACAGCGGCTGTCACGAGCATGCCG
ACCTCCGCGTCACCTTCGGCGATGGCCGCAACAGCGAGCGCCCAGAACGC
GATGCGGTGGCTGGAGTCTGATGTCTACTATCCTTTTCCGCCGTCGCCGC
CCAACGTCGACCCCATGCTGCGCTCCGTGCCGAGCACCATCTCCGACACA
CATCAACGGATCGCCTCAGGGTGTTCCTTGTCCAGCCGTGATCCCGAGGC
GGACGAACCCTTGATCCACATCGCCATTTCGCGCGGCACAATTGACACTC
TTCAATTGTTGCTCATGACCTACCCCATCTCAGTGAATGTCCGTGACCGG
GCGGGCTACACGCCGCTCCAACGAGCTGTCATCACTGGAAGGACAGACAT
GATGAAACTGCTCATTGAACATGGTGCCGACGCGGGGCTATGAATGAATC
AAATACAGCAGCAGCAACAGCAACAGCAACACCCTCTGGTAGGGTCAAAC
GGGACTACTACTTTGCCCGTCGTCGTTGACACTCGACGGCCGTCTGGACG
TCCCAAACATAATTCATACACCGACTTGATGAAGCCAGGCGAGAGCTGGG
AGGATCTCCCGGATGCCGCAGAGCGGAGGAGAATTCAGAACCGTCTAGCA
CAACGGGCATACCGCCGAAACATGCGCGACCGCACCAAAGAGGTCGAGCT
CCTCAAAAGTCAAGTCAAAAACCTTCAAGAAGCCATCAACAGCAACAGCT
CCACCCCCAACGACAGCAACAGCGGCAGCATCAGCGCGAGCGCGAGTACC
AGCGACGTGGACGACCGTCCCACGCGAGCCTCGTCGCAAGTCAGTACTAG
CAGTGTCTCTCCTGGACCCCGCGAAGCTCCGAGCACATATTTCCCATCCC
CAGACCAGGAGATGCTAGGCGATGGACTGAGCTGGCCGACGGACCTGGAC
CACGACTTCAGCAACTGCTTCGATAAAACAAAGGACGTTACAGCGGCTGT
CACGAGCATGCCGACCTCCGCGTCACCTTCGGCGATGGCCGCAACAGCGA
GCGCCCAGAACGCGATGCGGTGGCTGGAGTCTGATGTCTACTATCCTTTT
CCGCCGTCGCCGCCCAACGTCGACCCCATGCTGCGCTCCGTGCCGAGCAC
CATCTCCGACACACATCAACGGATCGCCTCAGGGTGTTCCTTGTCCAGCC
GTGATCCCGAGGCGGACGAACCCTTGATCCACATCGCCATTTCGCGCGGC
ACAATTGACACTCTTCAATTGTTGCTCATGACCTACCCCATCTCAGTGAA
TGTCCGTGACCGGGCGGGCTACACGCCGCTCCAACGAGCTGTCATCACTG
GAAGGACAGACATGATGAAACTGCTCATTGAACATGGTGCCGACGCGGGG
CTATGAATGAATCAAATACAGCAGCAGCAACAGCAACAGCAACACCCTCT
GGTAGGGTCAAACGGGACTACTACTTTGCCCGTCGTCGTTGACACTCGAC
GGCCGTCTGGACGTCCCAAACATAATTCATACACCGACTTGATGAAGCCA
GGCGAGAGCTGGGAGGATCTCCCGGATGCCGCAGAGCGGAGGAGAATTCA
GAACCGTCTAGCACAACGGGCATACC back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009397-T1.utr3p1 | KJC3_009397-T1.utr3p1 | Aspergillus niger KJC3 | three_prime_UTR |
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| KJC3_009397-T1.utr5p1 | KJC3_009397-T1.utr5p1 | Aspergillus niger KJC3 | five_prime_UTR |
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_7.2 |
| DBxref | InterPro:IPR020683 |
| DBxref | InterPro:IPR036770 |
| DBxref | InterPro:IPR002110 |
| DBxref | PFAM:PF13857 |
| DBxref | PFAM:PF13606 |
| DBxref | PFAM:PF12796 |
| DBxref | PFAM:PF00023 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ch7 | supercontig | ch7:291008..292506 - |
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